Wall clock time and date at job start Mon Mar 30 2020 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47213 * 2 1 4 4 C 1.53007 * 109.47198 * 240.00141 * 2 1 3 5 5 C 1.50700 * 109.47104 * 175.99821 * 4 2 1 6 6 H 1.07991 * 120.00199 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99660 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00298 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00067 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46698 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47370 * 119.99888 * 9 7 5 12 12 H 1.48496 * 109.47277 * 240.00343 * 9 7 5 13 13 N 1.46899 * 109.47261 * 120.00463 * 2 1 3 14 14 C 1.46851 * 110.99926 * 289.38908 * 13 2 1 15 15 C 1.53035 * 109.52306 * 185.83745 * 14 13 2 16 16 C 1.53112 * 109.28045 * 300.81661 * 15 14 13 17 17 C 1.50701 * 109.52541 * 177.55794 * 16 15 14 18 18 C 1.39870 * 125.90166 * 275.13088 * 17 16 15 19 19 C 1.35313 * 107.91722 * 180.21689 * 18 17 16 20 20 N 1.34940 * 107.75096 * 359.61110 * 19 18 17 21 21 C 1.46504 * 126.04080 * 180.14498 * 20 19 18 22 22 N 1.30842 * 125.89626 * 95.10600 * 17 16 15 23 23 C 1.53129 * 109.21107 * 57.62462 * 16 15 14 24 24 C 1.46845 * 111.00121 * 53.59479 * 13 2 1 25 25 H 1.08997 * 109.46718 * 59.99705 * 1 2 3 26 26 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46765 * 299.99884 * 1 2 3 28 28 H 1.09002 * 109.47028 * 295.99871 * 4 2 1 29 29 H 1.08997 * 109.46949 * 55.99530 * 4 2 1 30 30 H 0.96999 * 120.00491 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46160 * 65.81530 * 14 13 2 32 32 H 1.08997 * 109.46032 * 305.85774 * 14 13 2 33 33 H 1.09006 * 109.50186 * 180.87689 * 15 14 13 34 34 H 1.08993 * 109.53542 * 60.78232 * 15 14 13 35 35 H 1.08998 * 109.52871 * 297.68939 * 16 15 14 36 36 H 1.07999 * 126.03522 * 359.95910 * 18 17 16 37 37 H 1.08007 * 126.12515 * 179.75922 * 19 18 17 38 38 H 1.08996 * 109.46855 * 270.26151 * 21 20 19 39 39 H 1.08999 * 109.46837 * 30.25892 * 21 20 19 40 40 H 1.09001 * 109.47039 * 150.26154 * 21 20 19 41 41 H 1.08999 * 109.49873 * 62.31799 * 23 16 15 42 42 H 1.08995 * 109.50291 * 182.43383 * 23 16 15 43 43 H 1.08998 * 109.46371 * 294.18284 * 24 13 2 44 44 H 1.09007 * 109.46291 * 54.16016 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5438 -0.6359 -1.2999 6 1 4.0819 -0.1194 -0.5189 7 6 4.2325 -1.2174 -2.3432 8 7 3.5772 -1.8460 -3.2945 9 14 6.0965 -1.1123 -2.4056 10 1 6.5894 -0.3567 -1.2260 11 1 6.6703 -2.4819 -2.3918 12 1 6.5117 -0.4142 -3.6488 13 7 2.0197 -0.6926 1.1994 14 6 1.7661 0.1034 2.4071 15 6 2.4157 -0.5774 3.6140 16 6 1.8328 -1.9839 3.7755 17 6 2.5116 -2.6815 4.9260 18 6 3.7194 -3.3838 4.8618 19 6 3.9876 -3.8646 6.0979 20 7 2.9895 -3.4729 6.9172 21 6 2.8804 -3.7722 8.3472 22 7 2.0731 -2.7342 6.1576 23 6 2.0663 -2.7772 2.4866 24 6 1.4281 -2.0318 1.3122 25 1 -0.3632 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7365 -1.7675 -1.2142 29 1 1.6193 -0.2505 -2.1378 30 1 4.0617 -2.2547 -4.0288 31 1 0.6913 0.1835 2.5701 32 1 2.1892 1.0999 2.2808 33 1 2.2140 0.0055 4.5128 34 1 3.4923 -0.6452 3.4584 35 1 0.7628 -1.9146 3.9717 36 1 4.3281 -3.5219 3.9804 37 1 4.8478 -4.4541 6.3791 38 1 2.3396 -4.7088 8.4820 39 1 3.8782 -3.8636 8.7763 40 1 2.3423 -2.9667 8.8469 41 1 3.1372 -2.8807 2.3121 42 1 1.6151 -3.7649 2.5805 43 1 0.3549 -1.9418 1.4804 44 1 1.6060 -2.5863 0.3907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932141060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:28 Heat of formation + Delta-G solvation = 50.825193 kcal Electronic energy + Delta-G solvation = -22004.591623 eV Core-core repulsion = 18957.303072 eV Total energy + Delta-G solvation = -3047.288550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14650 -40.22254 -36.75187 -34.76586 -33.63380 -31.81680 -31.28180 -30.79369 -29.10799 -27.41598 -25.43258 -24.68363 -24.00899 -22.16710 -21.46495 -20.45080 -19.77774 -18.28987 -17.89847 -16.89400 -16.49051 -16.28098 -15.75215 -15.51275 -15.24796 -14.92650 -14.66971 -14.43171 -14.32750 -13.83796 -13.66621 -13.53894 -13.38078 -13.18455 -13.05863 -12.86811 -12.73683 -12.52726 -12.32407 -12.07867 -11.93264 -11.76920 -11.58046 -11.30311 -11.29801 -11.01484 -10.84154 -10.42846 -10.11633 -9.42697 -8.81306 -8.04881 -6.08834 0.98444 1.44178 1.45291 1.58584 1.72567 1.86814 2.51804 3.16949 3.32788 3.51620 3.83948 4.00470 4.09343 4.12773 4.25851 4.38529 4.44741 4.46066 4.49173 4.53173 4.58031 4.69544 4.70306 4.76438 4.80608 4.84713 4.93883 5.01710 5.03245 5.11045 5.17532 5.22923 5.28628 5.29952 5.32855 5.54857 5.58180 5.74414 5.77551 5.95953 6.22423 6.39748 6.55053 6.62188 6.80975 7.05459 7.56732 9.07450 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.004407 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.604030 B = 6352.215811 C = 7296.307716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 H 0.064 0.936 4 C 0.036 3.964 5 C -0.493 4.493 6 H 0.058 0.942 7 C -0.006 4.006 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.528 5.528 14 C 0.058 3.942 15 C -0.091 4.091 16 C 0.002 3.998 17 C 0.077 3.923 18 C -0.290 4.290 19 C 0.062 3.938 20 N -0.385 5.385 21 C 0.094 3.906 22 N -0.336 5.336 23 C -0.093 4.093 24 C 0.063 3.937 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.064 0.936 28 H -0.003 1.003 29 H -0.010 1.010 30 H 0.257 0.743 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.146 0.854 37 H 0.212 0.788 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -3.203 22.585 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.014 4.014 3 H 0.083 0.917 4 C -0.001 4.001 5 C -0.532 4.532 6 H 0.076 0.924 7 C -0.201 4.201 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.252 5.252 14 C -0.070 4.070 15 C -0.130 4.130 16 C -0.019 4.019 17 C -0.088 4.088 18 C -0.319 4.319 19 C -0.084 4.084 20 N -0.167 5.167 21 C -0.045 4.045 22 N -0.159 5.159 23 C -0.132 4.132 24 C -0.065 4.065 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.016 0.984 29 H 0.008 0.992 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.164 0.836 37 H 0.229 0.771 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.085 -3.043 23.416 23.705 hybrid contribution 0.656 -0.321 -1.160 1.371 sum -1.429 -3.364 22.257 22.555 Atomic orbital electron populations 1.22388 0.97407 1.01608 1.01861 1.21611 0.91922 0.97194 0.90650 0.91742 1.19057 0.95252 0.94374 0.91422 1.21518 0.93110 1.32375 1.06188 0.92367 1.25829 1.02711 0.95803 0.95770 1.70101 1.36871 1.38644 1.12803 0.85547 0.80938 0.77597 0.77840 1.18923 1.20952 1.20994 1.61922 1.59180 1.02426 1.01712 1.22088 0.98313 0.96977 0.89606 1.21453 1.00475 0.94048 0.96978 1.19489 0.98628 0.94215 0.89519 1.22354 0.95383 0.98162 0.92916 1.21641 1.00834 1.09961 0.99503 1.23085 0.95065 1.00071 0.90211 1.48860 1.16941 1.40758 1.10125 1.22168 1.05769 1.02893 0.73696 1.77204 1.16188 1.18198 1.04359 1.21484 1.01705 0.97774 0.92189 1.21969 0.95825 0.90484 0.98246 0.92551 0.93038 0.91667 0.98449 0.99157 0.93396 0.94409 0.90857 0.90950 0.92019 0.90533 0.83608 0.77092 0.89759 0.86506 0.89507 0.91699 0.91177 0.94580 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.92 8.44 71.98 0.61 -5.31 16 2 C 0.09 3.88 2.26 44.92 0.10 3.99 16 3 H 0.06 2.68 7.98 -2.39 -0.02 2.66 16 4 C 0.04 1.90 4.37 29.85 0.13 2.03 16 5 C -0.49 -28.20 8.81 25.60 0.23 -27.97 16 6 H 0.06 3.30 7.74 -2.92 -0.02 3.28 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 9 Si 0.95 45.85 29.54 68.60 2.03 47.87 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 N -0.53 -19.98 4.29 -871.09 -3.74 -23.72 16 14 C 0.06 1.78 5.14 86.32 0.44 2.22 16 15 C -0.09 -2.59 5.36 30.64 0.16 -2.42 16 16 C 0.00 0.06 2.71 -11.46 -0.03 0.03 16 17 C 0.08 2.20 6.14 43.10 0.26 2.46 16 18 C -0.29 -7.41 9.97 21.99 0.22 -7.19 16 19 C 0.06 1.20 11.49 83.54 0.96 2.16 16 20 N -0.38 -8.06 4.01 -369.56 -1.48 -9.55 16 21 C 0.09 0.99 11.47 127.77 1.47 2.45 16 22 N -0.34 -9.55 12.58 -47.38 -0.60 -10.14 16 23 C -0.09 -2.90 5.02 30.65 0.15 -2.75 16 24 C 0.06 2.24 4.53 86.33 0.39 2.64 16 25 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.76 6.46 -2.39 -0.02 1.75 16 27 H 0.06 1.89 6.84 -2.39 -0.02 1.88 16 28 H 0.00 -0.15 6.28 -2.39 -0.01 -0.17 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.04 1.07 6.89 -2.39 -0.02 1.05 16 32 H 0.07 2.20 8.01 -2.39 -0.02 2.18 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.15 3.71 7.36 -2.91 -0.02 3.69 16 37 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 2.19 7.19 -2.39 -0.02 2.18 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 43 H 0.04 1.19 6.57 -2.39 -0.02 1.17 16 44 H 0.06 2.36 6.17 -2.38 -0.01 2.34 16 Total: -1.00 -71.31 343.32 3.01 -68.30 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.96 Total: 12.72 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 5.56 Total: -27.54 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -5.53 Total: -101.36 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -71.31 3.01 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932141060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.126 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds