Wall clock time and date at job start Mon Mar 30 2020 02:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.53123 * 109.52139 * 34.67742 * 6 5 4 8 8 C 1.53036 * 109.27732 * 182.44237 * 7 6 5 9 9 N 1.46855 * 109.52301 * 59.18374 * 8 7 6 10 10 C 1.46900 * 110.99932 * 174.15816 * 9 8 7 11 11 C 1.52996 * 109.47264 * 314.20802 * 10 9 8 12 12 C 1.52999 * 109.47111 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47229 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99835 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00025 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99889 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00072 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46857 * 90.00729 * 17 15 13 19 19 H 1.48499 * 109.47255 * 210.00169 * 17 15 13 20 20 H 1.48500 * 109.47191 * 330.00613 * 17 15 13 21 21 C 1.46846 * 111.19418 * 298.25878 * 9 8 7 22 22 C 1.53032 * 109.52741 * 61.74054 * 21 9 8 23 23 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 24 24 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 25 25 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 26 26 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 27 27 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 28 28 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 29 29 H 1.09000 * 109.52841 * 154.87596 * 6 5 4 30 30 H 1.08995 * 109.50251 * 302.38679 * 7 6 5 31 31 H 1.09004 * 109.49811 * 62.50660 * 7 6 5 32 32 H 1.09003 * 109.46642 * 299.17078 * 8 7 6 33 33 H 1.09003 * 109.45252 * 179.19057 * 8 7 6 34 34 H 1.08998 * 109.47128 * 74.21497 * 10 9 8 35 35 H 1.09003 * 109.46652 * 194.20740 * 10 9 8 36 36 H 1.09000 * 109.47202 * 300.00069 * 11 10 9 37 37 H 1.09007 * 109.46858 * 60.00457 * 11 10 9 38 38 H 1.08998 * 109.47381 * 300.00756 * 12 11 10 39 39 H 1.09003 * 109.46552 * 60.00093 * 12 11 10 40 40 H 0.96998 * 119.99929 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.46225 * 301.71825 * 21 9 8 42 42 H 1.09000 * 109.45162 * 181.75581 * 21 9 8 43 43 H 1.08998 * 109.50335 * 180.87868 * 22 21 9 44 44 H 1.09003 * 109.53649 * 60.77968 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 5.8646 -0.9653 0.8250 8 6 7.1152 -1.8460 0.7748 9 7 7.5411 -2.0146 -0.6205 10 6 8.8167 -2.7389 -0.6976 11 6 9.7946 -2.1602 0.3269 12 6 11.1230 -2.9151 0.2469 13 6 12.0861 -2.3455 1.2564 14 1 11.7812 -1.5267 1.8912 15 6 13.3566 -2.8690 1.3688 16 7 14.1968 -2.3722 2.2502 17 14 13.8840 -4.2848 0.2703 18 1 14.4849 -3.7466 -0.9765 19 1 14.8858 -5.1177 0.9829 20 1 12.7008 -5.1155 -0.0689 21 6 6.5049 -2.6873 -1.4142 22 6 5.2361 -1.8319 -1.4294 23 7 2.2892 -1.1327 0.0055 24 1 -0.3633 0.0046 1.0276 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8922 -0.5099 27 1 1.9281 2.1194 0.0004 28 1 4.4211 1.2964 -0.0061 29 1 4.4933 -2.5868 0.4485 30 1 6.0927 0.0148 0.4064 31 1 5.5397 -0.8533 1.8594 32 1 6.8901 -2.8215 1.2061 33 1 7.9153 -1.3730 1.3442 34 1 8.6487 -3.7944 -0.4838 35 1 9.2345 -2.6331 -1.6988 36 1 9.9626 -1.1047 0.1129 37 1 9.3768 -2.2660 1.3281 38 1 10.9547 -3.9705 0.4610 39 1 11.5410 -2.8097 -0.7543 40 1 15.0906 -2.7407 2.3296 41 1 6.2827 -3.6588 -0.9727 42 1 6.8620 -2.8255 -2.4348 43 1 4.4622 -2.3389 -2.0057 44 1 5.4537 -0.8652 -1.8837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932145445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:22 Heat of formation + Delta-G solvation = 66.396618 kcal Electronic energy + Delta-G solvation = -21090.082118 eV Core-core repulsion = 18043.468795 eV Total energy + Delta-G solvation = -3046.613323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40606 -38.96100 -35.40476 -33.63383 -32.45999 -31.14576 -30.72334 -30.17347 -27.60263 -26.20551 -24.21967 -23.15339 -21.88955 -21.31634 -20.27129 -19.57111 -19.18033 -17.23434 -16.67734 -15.72657 -15.59852 -14.94793 -14.84695 -14.43412 -14.14075 -14.01880 -13.74102 -13.64748 -13.19924 -12.91180 -12.78524 -12.70565 -12.51976 -12.10243 -11.79389 -11.56880 -11.10361 -11.06536 -11.03371 -10.74935 -10.60368 -10.48373 -10.32636 -9.81961 -9.63208 -9.52171 -9.34520 -9.10440 -8.71180 -8.49187 -8.00832 -5.99870 -3.97304 1.70196 2.30167 2.66109 3.34163 3.41225 3.45305 4.14814 4.21154 4.49349 4.55513 4.64333 4.78091 4.83150 4.91887 5.02423 5.24897 5.29229 5.34194 5.44320 5.46980 5.56016 5.63558 5.69545 5.71028 5.73709 5.85102 5.94737 6.01023 6.07801 6.17630 6.19019 6.23132 6.42628 6.52786 6.61783 6.65894 6.80795 6.95525 7.34272 7.38601 7.42451 7.51733 7.58004 7.85177 8.59438 9.05685 9.63019 11.13681 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.048151 B = 0.002720 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.367020 B =10291.102656 C =10646.493035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.383 5.383 3 C 0.048 3.952 4 C -0.262 4.262 5 C 0.089 3.911 6 C -0.008 4.008 7 C -0.104 4.104 8 C 0.048 3.952 9 N -0.538 5.538 10 C 0.054 3.946 11 C -0.105 4.105 12 C -0.014 4.014 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.056 3.944 22 C -0.101 4.101 23 N -0.301 5.301 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.172 0.828 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.508 5.063 -6.534 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.165 5.165 3 C -0.097 4.097 4 C -0.291 4.291 5 C -0.077 4.077 6 C -0.029 4.029 7 C -0.143 4.143 8 C -0.080 4.080 9 N -0.262 5.262 10 C -0.074 4.074 11 C -0.142 4.142 12 C -0.052 4.052 13 C -0.555 4.555 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.072 4.072 22 C -0.140 4.140 23 N -0.122 5.122 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.189 0.811 28 H 0.167 0.833 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.249 4.521 -6.659 29.373 hybrid contribution 0.663 -0.734 -0.161 1.002 sum -27.586 3.787 -6.820 28.668 Atomic orbital electron populations 1.21803 0.74550 1.04291 1.03174 1.48487 1.06441 1.03905 1.57692 1.22528 0.91306 0.93345 1.02530 1.21447 0.96948 0.94640 1.16083 1.22341 0.92854 0.94094 0.98427 1.19647 0.89133 0.96754 0.97344 1.21625 0.93272 0.99935 0.99427 1.22235 0.97333 0.98496 0.89913 1.62028 1.03078 1.50413 1.10716 1.22300 0.88921 0.95057 1.01081 1.21624 0.95269 1.00495 0.96861 1.19554 0.92953 0.95691 0.96951 1.21148 0.96587 1.18576 1.19205 0.91040 1.25048 0.96587 0.96772 0.95251 1.69921 1.06694 1.42394 1.35423 0.86766 0.78531 0.83011 0.80893 1.20307 1.21489 1.19075 1.22059 0.91695 0.94948 0.98533 1.21559 0.96163 1.01202 0.95036 1.77319 1.01451 1.07832 1.25639 0.90961 0.89643 0.89462 0.81100 0.83311 0.90285 0.90468 0.91492 0.95114 0.88914 0.95437 0.91113 0.91903 0.92510 0.96879 0.97035 0.92820 0.95131 0.90753 0.91805 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.47 59.85 0.69 1.23 16 2 N -0.38 -3.76 4.01 -68.16 -0.27 -4.04 16 3 C 0.05 0.42 11.49 -17.22 -0.20 0.23 16 4 C -0.26 -2.76 9.97 -40.01 -0.40 -3.16 16 5 C 0.09 1.09 6.14 -82.41 -0.51 0.58 16 6 C -0.01 -0.10 2.72 -91.65 -0.25 -0.35 16 7 C -0.10 -1.23 5.01 -26.65 -0.13 -1.37 16 8 C 0.05 0.67 4.85 -3.83 -0.02 0.65 16 9 N -0.54 -7.89 4.81 -234.67 -1.13 -9.01 16 10 C 0.05 0.89 5.27 -3.83 -0.02 0.87 16 11 C -0.10 -2.09 4.40 -26.73 -0.12 -2.21 16 12 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 13 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 14 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.91 -28.29 13.96 55.43 0.77 -27.52 16 17 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 21 C 0.06 0.70 5.42 -3.84 -0.02 0.68 16 22 C -0.10 -1.15 5.36 -26.65 -0.14 -1.30 16 23 N -0.30 -3.87 12.58 33.67 0.42 -3.45 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 28 H 0.15 1.40 7.36 -52.49 -0.39 1.01 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.91 7.18 -51.93 -0.37 0.54 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.40 5.81 -51.93 -0.30 1.10 16 34 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.13 6.21 -51.93 -0.32 0.80 16 38 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -33.53 346.31 -8.97 -42.50 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.65 Total: -3.03 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.66 Total: -18.07 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.20 Total: -44.02 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.53 -8.97 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932145445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.896 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds