Wall clock time and date at job start Mon Mar 30 2020 02:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47399 * 2 1 4 4 C 1.46906 * 110.99808 * 160.28611 * 3 2 1 5 5 C 1.52999 * 109.47265 * 287.95251 * 4 3 2 6 6 C 1.46896 * 110.99967 * 284.23856 * 3 2 1 7 7 C 1.52996 * 109.46865 * 169.99690 * 6 3 2 8 8 H 1.09005 * 109.46847 * 65.00568 * 7 6 3 9 9 C 1.52998 * 109.47296 * 185.00255 * 7 6 3 10 10 N 1.46501 * 109.47634 * 305.00455 * 7 6 3 11 11 C 1.38824 * 119.99940 * 154.99836 * 10 7 6 12 12 C 1.39799 * 119.58675 * 0.02562 * 11 10 7 13 13 C 1.38594 * 119.49046 * 179.97438 * 12 11 10 14 14 C 1.38388 * 118.68145 * 0.02562 * 13 12 11 15 15 C 1.40554 * 119.14948 * 359.97438 * 14 13 12 16 16 C 1.41317 * 119.78606 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99728 * 0.02562 * 16 15 14 18 18 C 1.40027 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.30737 * 120.00180 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99593 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46917 * 60.00088 * 20 18 16 22 22 H 1.48497 * 109.46801 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47292 * 300.00207 * 20 18 16 24 24 N 1.31952 * 119.58206 * 180.02562 * 11 10 7 25 25 H 1.09004 * 109.46732 * 65.49401 * 1 2 3 26 26 H 1.08996 * 109.47428 * 185.49778 * 1 2 3 27 27 H 1.08999 * 109.47075 * 305.49920 * 1 2 3 28 28 H 1.09004 * 109.46961 * 239.99493 * 2 1 3 29 29 H 1.09004 * 109.46928 * 120.00164 * 2 1 3 30 30 H 1.09005 * 109.46788 * 47.95642 * 4 3 2 31 31 H 1.09000 * 109.46486 * 167.95347 * 4 3 2 32 32 H 1.09002 * 109.47164 * 299.10065 * 5 4 3 33 33 H 1.09006 * 109.46815 * 59.10245 * 5 4 3 34 34 H 1.08993 * 109.47206 * 179.09470 * 5 4 3 35 35 H 1.09002 * 109.46994 * 50.00558 * 6 3 2 36 36 H 1.08995 * 109.47584 * 290.00338 * 6 3 2 37 37 H 1.08998 * 109.47190 * 60.00048 * 9 7 6 38 38 H 1.08996 * 109.47823 * 180.02562 * 9 7 6 39 39 H 1.09005 * 109.47393 * 300.00591 * 9 7 6 40 40 H 0.96997 * 119.99539 * 334.99917 * 10 7 6 41 41 H 1.07998 * 120.25398 * 0.25581 * 12 11 10 42 42 H 1.08000 * 120.65926 * 180.02562 * 13 12 11 43 43 H 1.08001 * 120.42609 * 179.97438 * 14 13 12 44 44 H 0.97007 * 120.00092 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4125 1.4508 0.4626 5 6 3.4627 1.1867 1.9688 6 6 1.8772 1.9937 -1.3293 7 6 2.1590 3.4946 -1.2356 8 1 3.2009 3.6519 -0.9567 9 6 1.8897 4.1497 -2.5918 10 7 1.2864 4.0931 -0.2224 11 6 1.6675 5.2647 0.4174 12 6 2.8856 5.8664 0.0876 13 6 3.2638 7.0363 0.7271 14 6 2.4175 7.5760 1.6798 15 6 1.2060 6.9240 1.9674 16 6 0.3319 7.4630 2.9383 17 1 0.5956 8.3733 3.4562 18 6 -0.8764 6.8174 3.2279 19 7 -1.1958 5.7158 2.6005 20 14 -2.0321 7.5304 4.5107 21 1 -2.4446 8.8967 4.1005 22 1 -3.2330 6.6652 4.6304 23 1 -1.3371 7.5958 5.8214 24 7 0.8755 5.7964 1.3290 25 1 -0.3633 0.4263 -0.9351 26 1 -0.3634 -1.0229 0.0985 27 1 -0.3633 0.5967 0.8366 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.0043 0.6981 -0.0583 31 1 3.8182 2.4407 0.2536 32 1 2.8839 1.9487 2.4908 33 1 3.0421 0.2033 2.1794 34 1 4.4976 1.2196 2.3092 35 1 0.8621 1.8367 -1.6938 36 1 2.5858 1.5332 -2.0177 37 1 0.8478 3.9923 -2.8708 38 1 2.0908 5.2189 -2.5253 39 1 2.5389 3.7044 -3.3458 40 1 0.4424 3.6707 0.0014 41 1 3.5247 5.4254 -0.6630 42 1 4.2005 7.5173 0.4868 43 1 2.6845 8.4865 2.1958 44 1 -2.0330 5.2688 2.8009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116635984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:09 Heat of formation + Delta-G solvation = 38.507599 kcal Electronic energy + Delta-G solvation = -22306.324217 eV Core-core repulsion = 19258.501535 eV Total energy + Delta-G solvation = -3047.822681 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.79762 -37.76578 -35.32065 -33.29734 -31.71007 -31.26619 -30.08642 -28.96652 -27.84493 -25.48646 -24.99765 -22.90266 -21.76193 -21.22821 -20.56158 -19.46701 -17.23133 -16.41259 -15.67342 -15.49654 -14.86052 -14.73736 -14.39701 -14.14360 -13.81516 -13.48985 -13.09191 -12.81919 -12.55449 -12.47308 -12.16661 -11.85943 -11.78369 -11.73558 -11.58402 -11.41199 -11.30900 -11.09739 -10.97589 -10.92120 -10.62681 -10.50317 -10.32694 -10.12472 -9.80765 -9.37612 -8.74843 -8.13312 -7.78971 -7.36496 -6.30899 -6.20926 -4.36718 2.98185 3.15845 3.18733 3.36136 3.41085 3.93433 4.06024 4.39440 4.94799 4.96404 5.01544 5.25397 5.26870 5.42854 5.54101 5.54708 5.63236 5.69563 5.72524 5.74793 5.88290 5.98761 5.99808 6.08006 6.16881 6.20896 6.25044 6.33737 6.37167 6.50670 6.53779 6.73089 6.98961 7.00802 7.07765 7.24875 7.26755 7.37283 7.73281 7.94112 8.05597 8.29300 8.53286 8.88235 8.93487 9.28026 10.37801 10.53438 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.005533 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.806458 B = 5059.379708 C = 5846.568410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.526 5.526 4 C 0.053 3.947 5 C -0.145 4.145 6 C 0.049 3.951 7 C 0.165 3.835 8 H 0.072 0.928 9 C -0.167 4.167 10 N -0.715 5.715 11 C 0.420 3.580 12 C -0.371 4.371 13 C -0.032 4.032 14 C -0.322 4.322 15 C 0.295 3.705 16 C -0.437 4.437 17 H 0.080 0.920 18 C 0.073 3.927 19 N -0.713 5.713 20 Si 0.902 3.098 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 N -0.531 5.531 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.024 0.976 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.397 0.603 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 -10.592 -6.107 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.250 5.250 4 C -0.075 4.075 5 C -0.202 4.202 6 C -0.080 4.080 7 C 0.057 3.943 8 H 0.090 0.910 9 C -0.226 4.226 10 N -0.350 5.350 11 C 0.180 3.820 12 C -0.397 4.397 13 C -0.057 4.057 14 C -0.345 4.345 15 C 0.167 3.833 16 C -0.469 4.469 17 H 0.098 0.902 18 C -0.152 4.152 19 N -0.334 5.334 20 Si 0.726 3.274 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 N -0.253 5.253 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.233 0.767 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.962 -10.910 -5.692 12.657 hybrid contribution 0.547 0.112 -0.196 0.592 sum 3.509 -10.798 -5.888 12.790 Atomic orbital electron populations 1.21769 0.94896 1.01045 1.02748 1.22102 0.96324 0.89141 1.00210 1.61932 1.20568 1.17137 1.25382 1.22077 0.88220 1.01092 0.96114 1.21747 1.01125 1.01833 0.95540 1.22448 1.01469 0.94662 0.89422 1.20640 0.95395 0.90030 0.88198 0.90979 1.22293 1.01360 1.02117 0.96858 1.43945 1.23265 1.25311 1.42450 1.18516 0.88763 0.85749 0.89012 1.20604 1.01451 1.04200 1.13440 1.20565 0.96484 0.94193 0.94431 1.21494 1.00116 1.04937 1.07976 1.18179 0.89057 0.86602 0.89418 1.19514 1.01310 1.08398 1.17711 0.90177 1.26016 0.98484 0.94436 0.96314 1.70153 1.19519 1.12097 1.31672 0.86496 0.79528 0.79797 0.81536 1.19118 1.20426 1.19110 1.68237 1.31598 1.14033 1.11419 0.92997 0.92896 0.91274 0.95466 0.90970 0.95751 0.90339 0.91256 0.93262 0.92826 0.90428 0.94456 0.92719 0.91648 0.93028 0.76748 0.89435 0.89318 0.89030 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.94 37.16 0.37 -1.31 16 2 C 0.05 0.59 5.55 -3.82 -0.02 0.57 16 3 N -0.53 -7.27 4.12 -234.62 -0.97 -8.24 16 4 C 0.05 0.71 5.55 -3.82 -0.02 0.69 16 5 C -0.14 -1.96 9.99 37.16 0.37 -1.59 16 6 C 0.05 0.64 4.34 -3.83 -0.02 0.62 16 7 C 0.17 2.58 2.08 -67.93 -0.14 2.44 16 8 H 0.07 1.19 4.79 -51.93 -0.25 0.94 16 9 C -0.17 -2.38 9.40 37.16 0.35 -2.03 16 10 N -0.71 -14.36 4.96 -53.90 -0.27 -14.63 16 11 C 0.42 10.29 7.63 -155.32 -1.18 9.10 16 12 C -0.37 -8.63 8.84 -38.87 -0.34 -8.97 16 13 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 14 C -0.32 -8.37 9.83 -38.65 -0.38 -8.75 16 15 C 0.29 8.38 6.55 -85.00 -0.56 7.82 16 16 C -0.44 -12.13 9.14 -37.74 -0.34 -12.47 16 17 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 18 C 0.07 1.90 5.50 -17.35 -0.10 1.81 16 19 N -0.71 -19.31 11.46 55.55 0.64 -18.67 16 20 Si 0.90 19.18 29.56 -169.99 -5.02 14.16 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 N -0.53 -14.87 7.89 -10.33 -0.08 -14.95 16 25 H 0.05 0.59 6.97 -51.93 -0.36 0.22 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.29 8.00 -51.93 -0.42 -0.12 16 29 H 0.07 0.82 6.24 -51.93 -0.32 0.50 16 30 H 0.02 0.29 8.05 -51.93 -0.42 -0.13 16 31 H 0.08 1.18 6.02 -51.93 -0.31 0.87 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.60 6.52 -51.93 -0.34 0.26 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.99 6.72 -51.93 -0.35 0.64 16 36 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.07 7.63 -51.93 -0.40 0.67 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 8.36 8.72 -40.82 -0.36 8.01 16 41 H 0.09 1.82 6.03 -52.49 -0.32 1.50 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 44 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 348.71 15.07 5.26 5.26 Total: -1.00 -29.39 348.71 -10.05 -39.44 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -7.19 Total: 10.89 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -2.42 Total: -13.25 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.68 Total: -56.49 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.39 -10.05 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116635984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.946 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds