Wall clock time and date at job start Mon Mar 30 2020 02:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47399 * 2 1 4 4 C 1.46906 * 110.99808 * 160.28611 * 3 2 1 5 5 C 1.52999 * 109.47265 * 287.95251 * 4 3 2 6 6 C 1.46896 * 110.99967 * 284.23856 * 3 2 1 7 7 C 1.52996 * 109.46865 * 169.99690 * 6 3 2 8 8 H 1.09005 * 109.46847 * 65.00568 * 7 6 3 9 9 C 1.52998 * 109.47296 * 185.00255 * 7 6 3 10 10 N 1.46501 * 109.47634 * 305.00455 * 7 6 3 11 11 C 1.38824 * 119.99940 * 154.99836 * 10 7 6 12 12 C 1.39799 * 119.58675 * 0.02562 * 11 10 7 13 13 C 1.38594 * 119.49046 * 179.97438 * 12 11 10 14 14 C 1.38388 * 118.68145 * 0.02562 * 13 12 11 15 15 C 1.40554 * 119.14948 * 359.97438 * 14 13 12 16 16 C 1.41317 * 119.78606 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99728 * 0.02562 * 16 15 14 18 18 C 1.40027 * 119.99886 * 179.97438 * 16 15 14 19 19 N 1.30737 * 120.00180 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99593 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46917 * 60.00088 * 20 18 16 22 22 H 1.48497 * 109.46801 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47292 * 300.00207 * 20 18 16 24 24 N 1.31952 * 119.58206 * 180.02562 * 11 10 7 25 25 H 1.09004 * 109.46732 * 65.49401 * 1 2 3 26 26 H 1.08996 * 109.47428 * 185.49778 * 1 2 3 27 27 H 1.08999 * 109.47075 * 305.49920 * 1 2 3 28 28 H 1.09004 * 109.46961 * 239.99493 * 2 1 3 29 29 H 1.09004 * 109.46928 * 120.00164 * 2 1 3 30 30 H 1.09005 * 109.46788 * 47.95642 * 4 3 2 31 31 H 1.09000 * 109.46486 * 167.95347 * 4 3 2 32 32 H 1.09002 * 109.47164 * 299.10065 * 5 4 3 33 33 H 1.09006 * 109.46815 * 59.10245 * 5 4 3 34 34 H 1.08993 * 109.47206 * 179.09470 * 5 4 3 35 35 H 1.09002 * 109.46994 * 50.00558 * 6 3 2 36 36 H 1.08995 * 109.47584 * 290.00338 * 6 3 2 37 37 H 1.08998 * 109.47190 * 60.00048 * 9 7 6 38 38 H 1.08996 * 109.47823 * 180.02562 * 9 7 6 39 39 H 1.09005 * 109.47393 * 300.00591 * 9 7 6 40 40 H 0.96997 * 119.99539 * 334.99917 * 10 7 6 41 41 H 1.07998 * 120.25398 * 0.25581 * 12 11 10 42 42 H 1.08000 * 120.65926 * 180.02562 * 13 12 11 43 43 H 1.08001 * 120.42609 * 179.97438 * 14 13 12 44 44 H 0.97007 * 120.00092 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4125 1.4508 0.4626 5 6 3.4627 1.1867 1.9688 6 6 1.8772 1.9937 -1.3293 7 6 2.1590 3.4946 -1.2356 8 1 3.2009 3.6519 -0.9567 9 6 1.8897 4.1497 -2.5918 10 7 1.2864 4.0931 -0.2224 11 6 1.6675 5.2647 0.4174 12 6 2.8856 5.8664 0.0876 13 6 3.2638 7.0363 0.7271 14 6 2.4175 7.5760 1.6798 15 6 1.2060 6.9240 1.9674 16 6 0.3319 7.4630 2.9383 17 1 0.5956 8.3733 3.4562 18 6 -0.8764 6.8174 3.2279 19 7 -1.1958 5.7158 2.6005 20 14 -2.0321 7.5304 4.5107 21 1 -2.4446 8.8967 4.1005 22 1 -3.2330 6.6652 4.6304 23 1 -1.3371 7.5958 5.8214 24 7 0.8755 5.7964 1.3290 25 1 -0.3633 0.4263 -0.9351 26 1 -0.3634 -1.0229 0.0985 27 1 -0.3633 0.5967 0.8366 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.0043 0.6981 -0.0583 31 1 3.8182 2.4407 0.2536 32 1 2.8839 1.9487 2.4908 33 1 3.0421 0.2033 2.1794 34 1 4.4976 1.2196 2.3092 35 1 0.8621 1.8367 -1.6938 36 1 2.5858 1.5332 -2.0177 37 1 0.8478 3.9923 -2.8708 38 1 2.0908 5.2189 -2.5253 39 1 2.5389 3.7044 -3.3458 40 1 0.4424 3.6707 0.0014 41 1 3.5247 5.4254 -0.6630 42 1 4.2005 7.5173 0.4868 43 1 2.6845 8.4865 2.1958 44 1 -2.0330 5.2688 2.8009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116635984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:08 Heat of formation + Delta-G solvation = 21.302822 kcal Electronic energy + Delta-G solvation = -22307.070272 eV Core-core repulsion = 19258.501535 eV Total energy + Delta-G solvation = -3048.568736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30608 -39.25765 -36.79829 -35.18571 -32.90041 -32.71430 -31.96065 -30.18192 -29.52624 -27.27229 -26.26042 -23.96433 -23.39891 -22.96513 -21.90549 -20.84853 -19.13622 -18.08631 -16.95525 -16.74701 -16.42337 -16.30975 -15.80762 -15.57005 -15.24983 -14.83269 -14.60984 -14.42663 -14.01431 -13.73767 -13.57231 -13.38572 -13.09301 -12.85244 -12.77829 -12.73981 -12.67147 -12.55573 -12.49199 -12.34254 -12.12125 -12.08657 -11.70558 -11.55515 -11.32103 -11.19465 -10.56180 -9.75991 -9.34451 -9.12357 -8.15894 -8.11589 -6.42162 1.13896 1.41840 1.43296 1.53660 1.62217 2.27410 2.73440 2.98666 3.03891 3.83357 4.02760 4.11504 4.18900 4.27002 4.33322 4.45725 4.46272 4.52712 4.59808 4.64113 4.70097 4.74626 4.75538 4.84980 4.91809 5.01034 5.03177 5.06146 5.08711 5.12858 5.16459 5.23551 5.34300 5.38904 5.42584 5.46566 5.79610 6.03408 6.15081 6.23853 6.28164 6.29292 6.68948 6.92872 7.08441 7.36353 8.44274 8.58717 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.005533 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.806458 B = 5059.379708 C = 5846.568410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 N -0.551 5.551 4 C 0.056 3.944 5 C -0.139 4.139 6 C 0.057 3.943 7 C 0.162 3.838 8 H 0.067 0.933 9 C -0.159 4.159 10 N -0.707 5.707 11 C 0.407 3.593 12 C -0.367 4.367 13 C -0.031 4.031 14 C -0.352 4.352 15 C 0.262 3.738 16 C -0.475 4.475 17 H 0.082 0.918 18 C 0.027 3.973 19 N -0.748 5.748 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.261 1.261 24 N -0.566 5.566 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.390 0.610 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -12.011 -7.211 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 N -0.276 5.276 4 C -0.072 4.072 5 C -0.197 4.197 6 C -0.071 4.071 7 C 0.055 3.945 8 H 0.085 0.915 9 C -0.218 4.218 10 N -0.340 5.340 11 C 0.165 3.835 12 C -0.393 4.393 13 C -0.055 4.055 14 C -0.375 4.375 15 C 0.134 3.866 16 C -0.508 4.508 17 H 0.101 0.899 18 C -0.195 4.195 19 N -0.370 5.370 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.193 1.193 23 H -0.186 1.186 24 N -0.289 5.289 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.224 0.776 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.115 0.885 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.505 -12.358 -6.841 14.554 hybrid contribution 0.485 0.457 0.038 0.667 sum 3.990 -11.902 -6.803 14.277 Atomic orbital electron populations 1.21733 0.95010 1.01748 1.01558 1.22121 0.96135 0.88057 1.01194 1.61887 1.20916 1.18763 1.26062 1.22014 0.88491 1.00735 0.95966 1.21693 1.01328 1.01100 0.95583 1.22361 1.02466 0.92563 0.89743 1.20927 0.94133 0.91875 0.87535 0.91542 1.22203 1.02287 1.00606 0.96749 1.44130 1.23438 1.23872 1.42544 1.18936 0.89058 0.86854 0.88633 1.20914 1.01159 1.03845 1.13356 1.20963 0.97277 0.94101 0.93186 1.21632 1.00418 1.05770 1.09695 1.18644 0.90305 0.87408 0.90198 1.19866 1.02797 1.09278 1.18823 0.89946 1.26906 0.99645 0.94560 0.98345 1.70261 1.20232 1.13327 1.33177 0.85280 0.77095 0.79065 0.78282 1.18462 1.19292 1.18557 1.68210 1.33171 1.14606 1.12888 0.92882 0.90906 0.94063 0.93531 0.90751 0.93325 0.92223 0.95313 0.91915 0.91477 0.89981 0.91765 0.92618 0.94038 0.89559 0.77584 0.86725 0.85808 0.88502 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.94 71.98 0.72 -2.36 16 2 C 0.05 1.10 5.55 86.30 0.48 1.58 16 3 N -0.55 -14.40 4.12 -896.21 -3.69 -18.09 16 4 C 0.06 1.41 5.55 86.30 0.48 1.89 16 5 C -0.14 -3.71 9.99 71.98 0.72 -2.99 16 6 C 0.06 1.35 4.34 86.30 0.37 1.73 16 7 C 0.16 4.81 2.08 44.99 0.09 4.90 16 8 H 0.07 2.08 4.79 -2.38 -0.01 2.07 16 9 C -0.16 -4.21 9.40 71.98 0.68 -3.53 16 10 N -0.71 -28.62 4.96 -324.45 -1.61 -30.23 16 11 C 0.41 20.30 7.63 133.42 1.02 21.32 16 12 C -0.37 -16.93 8.84 22.73 0.20 -16.73 16 13 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 14 C -0.35 -18.78 9.83 22.87 0.22 -18.56 16 15 C 0.26 15.50 6.55 40.18 0.26 15.77 16 16 C -0.48 -27.44 9.14 23.46 0.21 -27.22 16 17 H 0.08 4.49 7.85 -2.91 -0.02 4.46 16 18 C 0.03 1.46 5.50 85.29 0.47 1.93 16 19 N -0.75 -41.88 11.46 21.84 0.25 -41.63 16 20 Si 0.98 40.12 29.56 68.60 2.03 42.14 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 N -0.57 -32.87 7.89 -186.58 -1.47 -34.35 16 25 H 0.05 1.11 6.97 -2.38 -0.02 1.09 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 0.83 8.00 -2.38 -0.02 0.81 16 29 H 0.07 1.53 6.24 -2.39 -0.01 1.52 16 30 H 0.05 1.01 8.05 -2.38 -0.02 0.99 16 31 H 0.06 1.73 6.02 -2.39 -0.01 1.72 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.46 6.52 -2.38 -0.02 1.45 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.90 6.72 -2.39 -0.02 1.88 16 36 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.04 1.29 7.63 -2.39 -0.02 1.27 16 39 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.39 16.82 8.72 -92.71 -0.81 16.01 16 41 H 0.11 4.58 6.03 -2.91 -0.02 4.56 16 42 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 43 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 44 H 0.27 13.97 8.29 -92.70 -0.77 13.20 16 Total: -1.00 -66.55 348.71 1.84 -64.71 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: 0.17 Total: 40.95 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 6.15 Total: -23.51 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -6.52 Total: -124.29 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -66.55 1.84 -64.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116635984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.013 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds