Wall clock time and date at job start Mon Mar 30 2020 02:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.46799 * 2 1 4 4 C 1.46897 * 111.00009 * 63.76132 * 3 2 1 5 5 C 1.53001 * 109.46927 * 67.99678 * 4 3 2 6 6 C 1.46903 * 111.00145 * 187.71933 * 3 2 1 7 7 C 1.53002 * 109.47031 * 161.58472 * 6 3 2 8 8 H 1.08998 * 109.47059 * 304.63803 * 7 6 3 9 9 C 1.53001 * 109.46694 * 184.64235 * 7 6 3 10 10 N 1.46494 * 109.47080 * 64.63869 * 7 6 3 11 11 C 1.38820 * 119.99774 * 212.49201 * 10 7 6 12 12 C 1.39795 * 119.58426 * 359.72804 * 11 10 7 13 13 C 1.38602 * 119.48658 * 179.79098 * 12 11 10 14 14 C 1.38390 * 118.68277 * 0.47839 * 13 12 11 15 15 C 1.40547 * 119.14790 * 359.74678 * 14 13 12 16 16 C 1.41319 * 119.78230 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99994 * 0.02562 * 16 15 14 18 18 C 1.40027 * 119.99914 * 180.02562 * 16 15 14 19 19 N 1.30750 * 120.00041 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00092 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47114 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47119 * 119.99966 * 20 18 16 23 23 H 1.48494 * 109.47619 * 240.00075 * 20 18 16 24 24 N 1.31956 * 119.58617 * 180.02562 * 11 10 7 25 25 H 1.08998 * 109.47661 * 63.88666 * 1 2 3 26 26 H 1.09009 * 109.46859 * 183.88677 * 1 2 3 27 27 H 1.09003 * 109.47575 * 303.88137 * 1 2 3 28 28 H 1.08995 * 109.47380 * 239.99974 * 2 1 3 29 29 H 1.09000 * 109.47549 * 119.99534 * 2 1 3 30 30 H 1.09004 * 109.47173 * 187.99114 * 4 3 2 31 31 H 1.08996 * 109.47309 * 307.99561 * 4 3 2 32 32 H 1.09001 * 109.47162 * 184.62524 * 5 4 3 33 33 H 1.09001 * 109.46709 * 304.62201 * 5 4 3 34 34 H 1.08993 * 109.47456 * 64.62352 * 5 4 3 35 35 H 1.08998 * 109.46793 * 41.58438 * 6 3 2 36 36 H 1.09002 * 109.46863 * 281.58642 * 6 3 2 37 37 H 1.09001 * 109.47569 * 59.99867 * 9 7 6 38 38 H 1.09007 * 109.47054 * 299.99871 * 9 7 6 39 39 H 1.09000 * 109.46894 * 179.97438 * 9 7 6 40 40 H 0.96998 * 120.00160 * 32.49579 * 10 7 6 41 41 H 1.08000 * 120.25780 * 359.97438 * 12 11 10 42 42 H 1.08000 * 120.65380 * 180.22534 * 13 12 11 43 43 H 1.08000 * 120.42314 * 179.77318 * 14 13 12 44 44 H 0.97000 * 119.99929 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6234 2.0835 1.2301 5 6 2.3680 1.4789 2.4221 6 6 3.4764 1.4285 -0.1842 7 6 3.8919 2.8307 -0.6338 8 1 3.3371 3.1038 -1.5314 9 6 5.3915 2.8454 -0.9371 10 7 3.5998 3.7920 0.4323 11 6 3.2360 5.0931 0.1131 12 6 3.1569 5.4782 -1.2284 13 6 2.7893 6.7766 -1.5449 14 6 2.5198 7.6605 -0.5147 15 6 2.6216 7.2144 0.8142 16 6 2.3489 8.1056 1.8766 17 1 2.0630 9.1255 1.6660 18 6 2.4495 7.6661 3.2023 19 7 2.7951 6.4312 3.4572 20 14 2.0897 8.8442 4.6066 21 1 1.7221 10.1733 4.0558 22 1 0.9640 8.3169 5.4190 23 1 3.2965 8.9787 5.4614 24 7 2.9751 5.9525 1.0799 25 1 -0.3634 0.4523 -0.9227 26 1 -0.3633 -1.0254 0.0697 27 1 -0.3634 0.5729 0.8532 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.8732 3.1410 1.1441 31 1 0.5492 1.9749 1.3797 32 1 2.0139 1.9407 3.3439 33 1 2.1832 0.4053 2.4594 34 1 3.4372 1.6600 2.3125 35 1 3.7684 0.7022 -0.9427 36 1 3.9690 1.1881 0.7579 37 1 5.6089 2.1301 -1.7303 38 1 5.9464 2.5722 -0.0395 39 1 5.6875 3.8442 -1.2579 40 1 3.6605 3.5194 1.3612 41 1 3.3775 4.7687 -2.0122 42 1 2.7186 7.0933 -2.5750 43 1 2.2345 8.6798 -0.7292 44 1 2.8651 6.1269 4.3756 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116635985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:12 Heat of formation + Delta-G solvation = 50.049988 kcal Electronic energy + Delta-G solvation = -22502.391143 eV Core-core repulsion = 19455.068977 eV Total energy + Delta-G solvation = -3047.322166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.11507 -37.82344 -35.36476 -33.35441 -31.46749 -31.16741 -30.12609 -28.97646 -27.86573 -25.43898 -25.03874 -23.68202 -21.71790 -21.18469 -19.96044 -19.45685 -17.31857 -16.39877 -15.99811 -15.76419 -14.89058 -14.80025 -14.26390 -14.13214 -13.55252 -13.45008 -13.02085 -12.87771 -12.68924 -12.42775 -12.15405 -11.95079 -11.85049 -11.76833 -11.67534 -11.31886 -11.23651 -11.10328 -10.92452 -10.80992 -10.66654 -10.44079 -10.35498 -10.19589 -9.81650 -9.39454 -8.74640 -8.02015 -7.82882 -7.44168 -6.38393 -6.27650 -4.40919 2.90935 3.14032 3.18430 3.31401 3.35244 4.02036 4.09150 4.26220 4.89617 5.01036 5.18236 5.21662 5.32912 5.49276 5.53646 5.57894 5.64547 5.68427 5.76394 5.80996 5.84702 5.99791 6.04851 6.14324 6.20180 6.21435 6.22917 6.30044 6.38015 6.52201 6.74510 6.76428 6.92930 6.97250 7.03491 7.30021 7.33178 7.36777 7.68153 7.89299 8.00933 8.22941 8.44578 8.75394 8.86804 9.19666 10.30461 10.46123 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.005564 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.404871 B = 5030.837232 C = 5863.101981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 N -0.528 5.528 4 C 0.026 3.974 5 C -0.187 4.187 6 C 0.042 3.958 7 C 0.162 3.838 8 H 0.089 0.911 9 C -0.165 4.165 10 N -0.728 5.728 11 C 0.414 3.586 12 C -0.362 4.362 13 C -0.033 4.033 14 C -0.319 4.319 15 C 0.294 3.706 16 C -0.436 4.436 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.716 5.716 20 Si 0.902 3.098 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.275 1.275 24 N -0.532 5.532 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.393 0.607 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 -11.659 -3.055 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 N -0.252 5.252 4 C -0.102 4.102 5 C -0.246 4.246 6 C -0.087 4.087 7 C 0.055 3.945 8 H 0.107 0.893 9 C -0.224 4.224 10 N -0.365 5.365 11 C 0.174 3.826 12 C -0.388 4.388 13 C -0.057 4.057 14 C -0.342 4.342 15 C 0.167 3.833 16 C -0.468 4.468 17 H 0.100 0.900 18 C -0.152 4.152 19 N -0.338 5.338 20 Si 0.727 3.273 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.201 1.201 24 N -0.253 5.253 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.160 -11.870 -2.612 12.155 hybrid contribution 0.234 0.164 0.801 0.850 sum 0.394 -11.706 -1.811 11.852 Atomic orbital electron populations 1.21811 0.95197 1.00898 1.02771 1.22099 0.96013 0.90012 1.00047 1.62228 1.11767 1.13967 1.37200 1.22718 0.99353 1.02029 0.86052 1.22369 1.01402 1.00336 1.00487 1.22510 0.88245 0.97468 1.00438 1.20732 0.94175 0.87192 0.92404 0.89286 1.22260 0.97031 1.02234 1.00890 1.44461 1.76715 1.08006 1.07314 1.18513 0.89287 0.85435 0.89368 1.20647 1.25652 0.97846 0.94658 1.20595 0.95104 0.93225 0.96779 1.21512 1.19079 0.99431 0.94151 1.18177 0.86606 0.88109 0.90452 1.19589 1.39958 0.97499 0.89779 0.90025 1.26015 0.93737 0.95282 1.00137 1.70167 1.28648 1.15074 1.19935 0.86367 0.78609 0.81468 0.80889 1.18501 1.20032 1.20053 1.68223 1.23222 1.02856 1.31040 0.91990 0.92874 0.92386 0.91412 0.95159 0.86604 0.91415 0.91865 0.93496 0.92536 0.90616 0.93881 0.92718 0.93040 0.91852 0.77057 0.89000 0.89132 0.88918 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.30 16 2 C 0.05 0.54 5.50 -3.82 -0.02 0.52 16 3 N -0.53 -7.55 4.67 -234.63 -1.10 -8.64 16 4 C 0.03 0.41 5.32 -3.83 -0.02 0.39 16 5 C -0.19 -2.64 8.81 37.16 0.33 -2.31 16 6 C 0.04 0.56 4.54 -3.82 -0.02 0.54 16 7 C 0.16 2.55 2.68 -67.93 -0.18 2.37 16 8 H 0.09 1.53 6.02 -51.93 -0.31 1.21 16 9 C -0.16 -2.30 9.52 37.16 0.35 -1.95 16 10 N -0.73 -14.20 2.99 -53.91 -0.16 -14.36 16 11 C 0.41 9.92 7.34 -155.33 -1.14 8.78 16 12 C -0.36 -8.37 9.25 -38.87 -0.36 -8.73 16 13 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 14 C -0.32 -8.16 9.83 -38.66 -0.38 -8.54 16 15 C 0.29 8.20 6.55 -85.00 -0.56 7.64 16 16 C -0.44 -11.88 9.14 -37.74 -0.34 -12.23 16 17 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 18 C 0.07 1.87 5.50 -17.34 -0.10 1.78 16 19 N -0.72 -18.88 11.46 55.55 0.64 -18.24 16 20 Si 0.90 18.87 29.56 -169.99 -5.02 13.84 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 24 N -0.53 -14.50 7.89 -10.33 -0.08 -14.58 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.06 0.69 6.16 -51.93 -0.32 0.37 16 28 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 29 H 0.03 0.35 6.30 -51.93 -0.33 0.02 16 30 H 0.12 2.28 4.90 -51.93 -0.25 2.03 16 31 H 0.07 1.06 5.98 -51.93 -0.31 0.75 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.59 6.36 -51.93 -0.33 0.26 16 34 H 0.06 0.80 5.48 -51.93 -0.28 0.52 16 35 H 0.08 0.86 7.79 -51.93 -0.40 0.46 16 36 H 0.04 0.57 5.61 -51.93 -0.29 0.28 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.39 7.80 6.42 -40.82 -0.26 7.54 16 41 H 0.09 1.92 6.06 -52.49 -0.32 1.60 16 42 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.09 2.23 8.06 -52.49 -0.42 1.80 16 44 H 0.27 6.40 8.29 -40.82 -0.34 6.07 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -28.49 337.97 -9.85 -38.34 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.75 Total: 12.74 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.47 Total: -14.20 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.70 Total: -55.82 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.49 -9.85 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116635985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.394 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds