Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.46799 * 2 1 4 4 C 1.46897 * 111.00009 * 63.76132 * 3 2 1 5 5 C 1.53001 * 109.46927 * 67.99678 * 4 3 2 6 6 C 1.46903 * 111.00145 * 187.71933 * 3 2 1 7 7 C 1.53002 * 109.47031 * 161.58472 * 6 3 2 8 8 H 1.08998 * 109.47059 * 304.63803 * 7 6 3 9 9 C 1.53001 * 109.46694 * 184.64235 * 7 6 3 10 10 N 1.46494 * 109.47080 * 64.63869 * 7 6 3 11 11 C 1.38820 * 119.99774 * 212.49201 * 10 7 6 12 12 C 1.39795 * 119.58426 * 359.72804 * 11 10 7 13 13 C 1.38602 * 119.48658 * 179.79098 * 12 11 10 14 14 C 1.38390 * 118.68277 * 0.47839 * 13 12 11 15 15 C 1.40547 * 119.14790 * 359.74678 * 14 13 12 16 16 C 1.41319 * 119.78230 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99994 * 0.02562 * 16 15 14 18 18 C 1.40027 * 119.99914 * 180.02562 * 16 15 14 19 19 N 1.30750 * 120.00041 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00092 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47114 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47119 * 119.99966 * 20 18 16 23 23 H 1.48494 * 109.47619 * 240.00075 * 20 18 16 24 24 N 1.31956 * 119.58617 * 180.02562 * 11 10 7 25 25 H 1.08998 * 109.47661 * 63.88666 * 1 2 3 26 26 H 1.09009 * 109.46859 * 183.88677 * 1 2 3 27 27 H 1.09003 * 109.47575 * 303.88137 * 1 2 3 28 28 H 1.08995 * 109.47380 * 239.99974 * 2 1 3 29 29 H 1.09000 * 109.47549 * 119.99534 * 2 1 3 30 30 H 1.09004 * 109.47173 * 187.99114 * 4 3 2 31 31 H 1.08996 * 109.47309 * 307.99561 * 4 3 2 32 32 H 1.09001 * 109.47162 * 184.62524 * 5 4 3 33 33 H 1.09001 * 109.46709 * 304.62201 * 5 4 3 34 34 H 1.08993 * 109.47456 * 64.62352 * 5 4 3 35 35 H 1.08998 * 109.46793 * 41.58438 * 6 3 2 36 36 H 1.09002 * 109.46863 * 281.58642 * 6 3 2 37 37 H 1.09001 * 109.47569 * 59.99867 * 9 7 6 38 38 H 1.09007 * 109.47054 * 299.99871 * 9 7 6 39 39 H 1.09000 * 109.46894 * 179.97438 * 9 7 6 40 40 H 0.96998 * 120.00160 * 32.49579 * 10 7 6 41 41 H 1.08000 * 120.25780 * 359.97438 * 12 11 10 42 42 H 1.08000 * 120.65380 * 180.22534 * 13 12 11 43 43 H 1.08000 * 120.42314 * 179.77318 * 14 13 12 44 44 H 0.97000 * 119.99929 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6234 2.0835 1.2301 5 6 2.3680 1.4789 2.4221 6 6 3.4764 1.4285 -0.1842 7 6 3.8919 2.8307 -0.6338 8 1 3.3371 3.1038 -1.5314 9 6 5.3915 2.8454 -0.9371 10 7 3.5998 3.7920 0.4323 11 6 3.2360 5.0931 0.1131 12 6 3.1569 5.4782 -1.2284 13 6 2.7893 6.7766 -1.5449 14 6 2.5198 7.6605 -0.5147 15 6 2.6216 7.2144 0.8142 16 6 2.3489 8.1056 1.8766 17 1 2.0630 9.1255 1.6660 18 6 2.4495 7.6661 3.2023 19 7 2.7951 6.4312 3.4572 20 14 2.0897 8.8442 4.6066 21 1 1.7221 10.1733 4.0558 22 1 0.9640 8.3169 5.4190 23 1 3.2965 8.9787 5.4614 24 7 2.9751 5.9525 1.0799 25 1 -0.3634 0.4523 -0.9227 26 1 -0.3633 -1.0254 0.0697 27 1 -0.3634 0.5729 0.8532 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.8732 3.1410 1.1441 31 1 0.5492 1.9749 1.3797 32 1 2.0139 1.9407 3.3439 33 1 2.1832 0.4053 2.4594 34 1 3.4372 1.6600 2.3125 35 1 3.7684 0.7022 -0.9427 36 1 3.9690 1.1881 0.7579 37 1 5.6089 2.1301 -1.7303 38 1 5.9464 2.5722 -0.0395 39 1 5.6875 3.8442 -1.2579 40 1 3.6605 3.5194 1.3612 41 1 3.3775 4.7687 -2.0122 42 1 2.7186 7.0933 -2.5750 43 1 2.2345 8.6798 -0.7292 44 1 2.8651 6.1269 4.3756 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116635985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = 33.857375 kcal Electronic energy + Delta-G solvation = -22503.093307 eV Core-core repulsion = 19455.068977 eV Total energy + Delta-G solvation = -3048.024330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54827 -39.41937 -36.81759 -35.20718 -33.04430 -32.23578 -31.97638 -30.29981 -29.43750 -27.27578 -26.24408 -24.78003 -23.47976 -22.84488 -21.43444 -20.68863 -19.18307 -18.08307 -17.22417 -16.92255 -16.55925 -16.41815 -15.91706 -15.34075 -15.24280 -14.79638 -14.54291 -14.37067 -13.93525 -13.76721 -13.55536 -13.44289 -13.01923 -12.99642 -12.85866 -12.77971 -12.70675 -12.53548 -12.42732 -12.30934 -12.05012 -11.94191 -11.68838 -11.60385 -11.48157 -11.17877 -10.47646 -9.76861 -9.38278 -9.11709 -8.18688 -8.13014 -6.42765 1.10463 1.40958 1.41963 1.56353 1.59108 2.26538 2.73340 2.96757 3.02098 3.95524 4.03738 4.10952 4.13115 4.32568 4.32994 4.42256 4.48693 4.49965 4.54752 4.64075 4.70240 4.73024 4.75230 4.86322 4.92790 5.04119 5.05389 5.08516 5.09009 5.14469 5.21767 5.24064 5.26685 5.38297 5.43913 5.51397 5.78528 6.02959 6.14245 6.20218 6.27079 6.30733 6.64108 6.89453 7.01567 7.30024 8.40341 8.55545 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.005564 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.404871 B = 5030.837232 C = 5863.101981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 N -0.542 5.542 4 C 0.033 3.967 5 C -0.177 4.177 6 C 0.048 3.952 7 C 0.158 3.842 8 H 0.076 0.924 9 C -0.157 4.157 10 N -0.717 5.717 11 C 0.403 3.597 12 C -0.364 4.364 13 C -0.032 4.032 14 C -0.349 4.349 15 C 0.261 3.739 16 C -0.473 4.473 17 H 0.082 0.918 18 C 0.029 3.971 19 N -0.748 5.748 20 Si 0.982 3.018 21 H -0.258 1.258 22 H -0.267 1.267 23 H -0.267 1.267 24 N -0.562 5.562 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.390 0.610 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.672 -13.548 -3.407 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 N -0.265 5.265 4 C -0.095 4.095 5 C -0.236 4.236 6 C -0.080 4.080 7 C 0.052 3.948 8 H 0.094 0.906 9 C -0.216 4.216 10 N -0.353 5.353 11 C 0.162 3.838 12 C -0.389 4.389 13 C -0.056 4.056 14 C -0.372 4.372 15 C 0.134 3.866 16 C -0.505 4.505 17 H 0.100 0.900 18 C -0.193 4.193 19 N -0.370 5.370 20 Si 0.803 3.197 21 H -0.181 1.181 22 H -0.192 1.192 23 H -0.192 1.192 24 N -0.285 5.285 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.226 0.774 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.115 0.885 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.571 -13.807 -3.001 14.141 hybrid contribution 0.117 0.612 0.790 1.006 sum 0.688 -13.196 -2.211 13.397 Atomic orbital electron populations 1.21798 0.95034 1.01987 1.01644 1.22185 0.96156 0.88432 1.01281 1.62188 1.12454 1.15684 1.36212 1.22442 0.99302 1.00057 0.87723 1.22257 1.00846 1.01309 0.99147 1.22495 0.87762 0.96222 1.01539 1.20996 0.95309 0.87672 0.90780 0.90558 1.22171 0.95353 1.01896 1.02159 1.44605 1.75551 1.06961 1.08191 1.18906 0.88697 0.86620 0.89565 1.20967 1.24672 0.98287 0.94984 1.20978 0.93653 0.92989 0.97971 1.21646 1.21041 1.00313 0.94198 1.18634 0.87317 0.88910 0.91723 1.19905 1.41730 0.97774 0.91122 0.90002 1.26870 0.93057 0.97095 1.02254 1.70256 1.29039 1.16776 1.20934 0.85171 0.78636 0.78907 0.77012 1.18123 1.19230 1.19226 1.68207 1.24528 1.03232 1.32540 0.92897 0.90622 0.93780 0.89546 0.94341 0.90736 0.91914 0.92951 0.91456 0.92741 0.87549 0.93450 0.89294 0.92706 0.94131 0.77449 0.86577 0.85799 0.88452 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.89 71.98 0.71 -2.29 16 2 C 0.05 0.96 5.50 86.30 0.47 1.44 16 3 N -0.54 -14.53 4.67 -896.22 -4.18 -18.71 16 4 C 0.03 1.04 5.32 86.30 0.46 1.50 16 5 C -0.18 -4.85 8.81 71.98 0.63 -4.21 16 6 C 0.05 1.16 4.54 86.30 0.39 1.55 16 7 C 0.16 4.73 2.68 44.99 0.12 4.86 16 8 H 0.08 2.50 6.02 -2.39 -0.01 2.48 16 9 C -0.16 -4.04 9.52 71.98 0.69 -3.35 16 10 N -0.72 -28.20 2.99 -324.47 -0.97 -29.17 16 11 C 0.40 19.76 7.34 133.42 0.98 20.74 16 12 C -0.36 -16.77 9.25 22.73 0.21 -16.56 16 13 C -0.03 -1.48 10.15 22.39 0.23 -1.26 16 14 C -0.35 -18.42 9.83 22.87 0.22 -18.20 16 15 C 0.26 15.21 6.55 40.18 0.26 15.48 16 16 C -0.47 -26.84 9.14 23.46 0.21 -26.63 16 17 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 18 C 0.03 1.52 5.50 85.29 0.47 1.99 16 19 N -0.75 -40.64 11.46 21.84 0.25 -40.39 16 20 Si 0.98 39.43 29.56 68.60 2.03 41.45 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 24 N -0.56 -31.85 7.89 -186.59 -1.47 -33.32 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.04 1.01 6.16 -2.39 -0.01 1.00 16 28 H 0.09 1.50 7.89 -2.39 -0.02 1.48 16 29 H 0.04 0.75 6.30 -2.39 -0.02 0.73 16 30 H 0.07 3.03 4.90 -2.38 -0.01 3.02 16 31 H 0.06 2.00 5.98 -2.39 -0.01 1.99 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.55 6.36 -2.39 -0.02 1.54 16 34 H 0.05 1.50 5.48 -2.39 -0.01 1.49 16 35 H 0.11 1.96 7.79 -2.39 -0.02 1.94 16 36 H 0.05 1.13 5.61 -2.39 -0.01 1.12 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.39 15.80 6.42 -92.71 -0.60 15.20 16 41 H 0.12 4.70 6.06 -2.91 -0.02 4.68 16 42 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 43 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 44 H 0.27 13.45 8.29 -92.71 -0.77 12.68 16 Total: -1.00 -64.34 337.97 2.12 -62.22 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: 0.40 Total: 42.87 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 6.07 Total: -24.94 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -6.37 Total: -121.60 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.45 kcal Total: -64.34 2.12 -62.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116635985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.073 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds