Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48496 * 109.46811 * 239.99755 * 3 2 1 5 5 H 1.48502 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47402 * 119.99591 * 3 2 1 7 7 C 1.37881 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99499 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00198 * 0.02562 * 7 2 1 10 10 C 1.53117 * 109.57650 * 299.71036 * 9 7 2 11 11 C 1.53035 * 109.28366 * 182.40946 * 10 9 7 12 12 N 1.46844 * 109.52364 * 59.17670 * 11 10 9 13 13 C 1.46901 * 111.00081 * 174.16439 * 12 11 10 14 14 C 1.53000 * 109.46829 * 294.10097 * 13 12 11 15 15 C 1.52937 * 109.41348 * 297.09531 * 14 13 12 16 16 C 1.53187 * 109.44891 * 176.84279 * 15 14 13 17 17 C 1.53152 * 108.82967 * 56.66898 * 16 15 14 18 18 C 1.52853 * 117.67447 * 91.45451 * 17 16 15 19 19 C 1.52805 * 117.75082 * 160.33563 * 17 16 15 20 20 C 1.53157 * 115.00739 * 306.02765 * 17 16 15 21 21 C 1.52942 * 109.40930 * 176.80717 * 14 13 12 22 22 C 1.46848 * 111.19735 * 298.26196 * 12 11 10 23 23 C 1.53041 * 109.52640 * 61.74089 * 22 12 11 24 24 H 0.97000 * 119.99867 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.52233 * 59.86965 * 9 7 2 26 26 H 1.09010 * 109.50277 * 62.46507 * 10 9 7 27 27 H 1.09002 * 109.50420 * 302.34936 * 10 9 7 28 28 H 1.09007 * 109.45907 * 299.16251 * 11 10 9 29 29 H 1.08997 * 109.46501 * 179.19600 * 11 10 9 30 30 H 1.08993 * 109.47142 * 54.10107 * 13 12 11 31 31 H 1.09002 * 109.47088 * 174.10514 * 13 12 11 32 32 H 1.08996 * 109.41303 * 56.95249 * 14 13 12 33 33 H 1.09001 * 109.47311 * 296.90876 * 15 14 13 34 34 H 1.09004 * 109.47742 * 56.91816 * 15 14 13 35 35 H 1.09000 * 109.62768 * 296.84864 * 16 15 14 36 36 H 1.08995 * 109.66960 * 176.51436 * 16 15 14 37 37 H 1.08991 * 117.50416 * 215.22100 * 18 17 16 38 38 H 1.08997 * 117.50354 * 0.28064 * 18 17 16 39 39 H 1.08997 * 117.50286 * 359.86124 * 19 17 16 40 40 H 1.09004 * 117.49688 * 144.89731 * 19 17 16 41 41 H 1.08997 * 109.56542 * 294.11293 * 20 17 16 42 42 H 1.08998 * 109.56826 * 173.75507 * 20 17 16 43 43 H 1.09004 * 109.47291 * 303.08067 * 21 14 13 44 44 H 1.08994 * 109.47592 * 63.09010 * 21 14 13 45 45 H 1.08998 * 109.46250 * 181.75602 * 22 12 11 46 46 H 1.08995 * 109.46335 * 301.73513 * 22 12 11 47 47 H 1.09004 * 109.49813 * 60.75891 * 23 22 12 48 48 H 1.09000 * 109.50218 * 180.84046 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.3749 -2.5857 1.2532 11 6 -0.3408 -3.9382 1.2769 12 7 0.6529 -5.0193 1.2772 13 6 0.0065 -6.3285 1.4391 14 6 -0.6302 -6.4146 2.8276 15 6 0.4613 -6.3168 3.8944 16 6 -0.1820 -6.3236 5.2846 17 6 -1.0320 -7.5893 5.4297 18 6 -0.3631 -8.8298 6.0214 19 6 -1.3906 -8.0475 6.8426 20 6 -2.0726 -7.8004 4.3259 21 6 -1.3705 -7.7458 2.9656 22 6 1.4751 -4.9851 0.0610 23 6 2.2451 -3.6639 0.0010 24 1 -0.4850 0.8401 -0.0004 25 1 0.6227 -2.5570 -0.8882 26 1 -0.3632 -1.7836 1.2372 27 1 0.9992 -2.4888 2.1415 28 1 -0.9756 -4.0286 0.3954 29 1 -0.9545 -4.0087 2.1750 30 1 -0.7641 -6.4498 0.6779 31 1 0.7511 -7.1172 1.3313 32 1 -1.3354 -5.5932 2.9544 33 1 1.1374 -7.1667 3.8014 34 1 1.0205 -5.3910 3.7584 35 1 -0.8149 -5.4437 5.3995 36 1 0.5953 -6.3164 6.0486 37 1 -0.6660 -9.8005 5.6292 38 1 0.6837 -8.7462 6.3135 39 1 -1.0197 -7.4494 7.6750 40 1 -2.3694 -8.5038 6.9905 41 1 -2.8262 -7.0147 4.3796 42 1 -2.5473 -8.7733 4.4529 43 1 -2.1111 -7.8339 2.1707 44 1 -0.6580 -8.5672 2.8912 45 1 2.1804 -5.8160 0.0759 46 1 0.8318 -5.0705 -0.8148 47 1 2.8988 -3.5840 0.8696 48 1 2.8437 -3.6326 -0.9093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119726453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = -19.760584 kcal Electronic energy + Delta-G solvation = -22506.860517 eV Core-core repulsion = 19560.051481 eV Total energy + Delta-G solvation = -2946.809036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64094 -39.51195 -36.71791 -35.07089 -32.98923 -31.75139 -31.44264 -29.64848 -27.39625 -24.91083 -23.85536 -23.71748 -23.27302 -22.78595 -21.01018 -20.29711 -19.46205 -18.43007 -16.87190 -16.31480 -16.25630 -16.14790 -15.68893 -15.48081 -14.84994 -14.59584 -14.49282 -14.26479 -14.18416 -13.96039 -13.59127 -13.16725 -13.05806 -12.93787 -12.80287 -12.53793 -12.43747 -12.40781 -12.23461 -12.00257 -11.86621 -11.84088 -11.74331 -11.43878 -11.22367 -10.89277 -10.79185 -10.71511 -10.60622 -10.37717 -10.31198 -9.09735 -8.07018 -6.20578 1.41401 1.42863 1.50405 2.44286 2.93578 3.08729 3.19714 3.74860 3.86298 3.87096 4.07979 4.14805 4.19487 4.28394 4.35853 4.41497 4.45041 4.52290 4.56743 4.64783 4.71127 4.74757 4.78823 4.82806 4.84548 4.93735 4.98171 5.03890 5.06161 5.08834 5.12138 5.19643 5.24067 5.26171 5.30403 5.31166 5.35100 5.37373 5.46736 5.58476 5.63056 5.65675 5.69513 6.02174 6.05885 6.34463 6.40937 6.42454 6.91063 7.47024 8.97276 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.028718 B = 0.003637 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.774424 B = 7696.017745 C = 8061.146366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.535 5.535 13 C 0.060 3.940 14 C -0.077 4.077 15 C -0.094 4.094 16 C -0.080 4.080 17 C -0.128 4.128 18 C -0.170 4.170 19 C -0.178 4.178 20 C -0.077 4.077 21 C -0.104 4.104 22 C 0.066 3.934 23 C -0.099 4.099 24 H 0.260 0.740 25 H -0.015 1.015 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.017 0.983 47 H 0.051 0.949 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -18.475 9.856 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.131 4.131 11 C -0.057 4.057 12 N -0.259 5.259 13 C -0.067 4.067 14 C -0.096 4.096 15 C -0.132 4.132 16 C -0.118 4.118 17 C -0.128 4.128 18 C -0.207 4.207 19 C -0.215 4.215 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.062 4.062 23 C -0.136 4.136 24 H 0.069 0.931 25 H 0.003 0.997 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.036 0.964 47 H 0.069 0.931 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.952 -18.281 10.242 21.162 hybrid contribution -0.225 1.298 -0.899 1.595 sum -3.177 -16.983 9.343 19.642 Atomic orbital electron populations 1.70018 1.07154 1.27067 1.51500 1.25748 0.95685 1.02345 0.94862 0.85694 0.78449 0.79211 0.78790 1.19721 1.20926 1.19686 1.21572 0.92978 0.92328 1.50401 0.93140 1.18641 0.93143 0.92631 0.92936 1.21394 0.99041 0.94701 0.97992 1.22020 0.93071 0.91862 0.98726 1.61933 1.23277 1.03156 1.37582 1.22208 0.97340 0.90576 0.96594 1.21073 0.96921 0.97894 0.93669 1.21321 0.97099 1.01610 0.93149 1.21127 0.97807 0.95657 0.97200 1.21489 1.00676 0.95862 0.94775 1.23040 0.98111 0.95707 1.03830 1.23048 1.00468 1.03965 0.94001 1.21104 0.95912 1.01729 0.92692 1.21476 0.99227 0.96474 0.96980 1.22038 0.96011 0.98211 0.89920 1.21532 0.97940 0.94106 1.00069 0.93126 0.99673 0.92352 0.95200 0.97376 0.91038 0.95622 0.89947 0.92705 0.92071 0.92788 0.92814 0.91938 0.88197 0.89017 0.88970 0.88217 0.92228 0.90724 0.91754 0.91233 0.89491 0.96432 0.93051 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 11.37 21.45 0.24 -53.95 16 2 C 0.01 0.68 5.31 84.66 0.45 1.13 16 3 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.53 -30.42 8.56 25.60 0.22 -30.20 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.04 2.34 2.16 -11.46 -0.02 2.31 16 10 C -0.09 -4.58 5.12 30.65 0.16 -4.42 16 11 C 0.07 2.84 5.29 86.33 0.46 3.29 16 12 N -0.53 -18.42 3.96 -896.37 -3.55 -21.97 16 13 C 0.06 1.63 4.36 86.30 0.38 2.00 16 14 C -0.08 -1.85 2.00 -10.83 -0.02 -1.87 16 15 C -0.09 -2.29 5.11 30.64 0.16 -2.14 16 16 C -0.08 -1.75 5.68 30.71 0.17 -1.58 16 17 C -0.13 -2.33 1.97 -52.19 -0.10 -2.44 16 18 C -0.17 -2.67 9.93 30.56 0.30 -2.37 16 19 C -0.18 -2.81 9.99 30.54 0.31 -2.51 16 20 C -0.08 -1.35 5.67 30.71 0.17 -1.18 16 21 C -0.10 -1.95 5.20 30.63 0.16 -1.79 16 22 C 0.07 2.33 5.46 86.33 0.47 2.80 16 23 C -0.10 -4.21 5.32 30.65 0.16 -4.04 16 24 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.06 3.24 6.18 -2.38 -0.01 3.22 16 27 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.07 2.64 6.16 -2.39 -0.01 2.63 16 30 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.08 1.98 7.99 -2.39 -0.02 1.96 16 32 H 0.05 1.51 6.30 -2.39 -0.02 1.49 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.61 7.59 -2.39 -0.02 1.59 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 43 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 2.57 8.01 -2.39 -0.02 2.55 16 46 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 48 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -60.35 358.06 3.02 -57.33 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.88 Total: 15.01 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 3.42 Total: -43.00 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -3.30 Total: -75.92 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.35 3.02 -57.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119726453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.573 kcal (2) G-P(sol) polarization free energy of solvation -60.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds