Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46930 * 2 1 4 4 C 1.53005 * 109.47199 * 180.02562 * 3 2 1 5 5 N 1.46489 * 109.47472 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00323 * 84.21488 * 5 4 3 7 7 H 1.08003 * 119.99857 * 325.56291 * 6 5 4 8 8 C 1.38808 * 120.00584 * 145.56090 * 6 5 4 9 9 N 1.31623 * 119.99532 * 336.91022 * 8 6 5 10 10 Si 1.86804 * 120.00340 * 156.90615 * 8 6 5 11 11 H 1.48496 * 109.46695 * 90.00248 * 10 8 6 12 12 H 1.48502 * 109.47023 * 210.00274 * 10 8 6 13 13 H 1.48494 * 109.46872 * 330.00252 * 10 8 6 14 14 C 1.46510 * 120.00173 * 264.21588 * 5 4 3 15 15 C 1.50702 * 109.46780 * 90.00063 * 14 5 4 16 16 C 1.38880 * 120.33949 * 90.00502 * 15 14 5 17 17 C 1.38292 * 118.50799 * 179.97438 * 16 15 14 18 18 C 1.39138 * 119.09806 * 0.02562 * 17 16 15 19 19 N 1.39005 * 119.70945 * 180.02562 * 18 17 16 20 20 C 1.46507 * 119.99532 * 4.99477 * 19 18 17 21 21 C 1.46493 * 120.00056 * 184.99615 * 19 18 17 22 22 N 1.32404 * 120.58696 * 0.02562 * 18 17 16 23 23 C 1.31973 * 121.62105 * 359.68871 * 22 18 17 24 24 H 1.09009 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47190 * 299.99408 * 1 2 3 26 26 H 1.09000 * 109.47195 * 59.99946 * 1 2 3 27 27 H 1.09002 * 109.46818 * 240.00198 * 2 1 3 28 28 H 1.08994 * 109.47509 * 120.00700 * 2 1 3 29 29 H 1.09002 * 109.47208 * 60.00437 * 3 2 1 30 30 H 1.09000 * 109.47225 * 300.00036 * 3 2 1 31 31 H 1.09003 * 109.47316 * 300.00507 * 4 3 2 32 32 H 1.09002 * 109.46739 * 60.00082 * 4 3 2 33 33 H 0.97006 * 119.99715 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46974 * 209.99654 * 14 5 4 35 35 H 1.08992 * 109.46855 * 329.99983 * 14 5 4 36 36 H 1.08001 * 120.74392 * 359.94681 * 16 15 14 37 37 H 1.08001 * 120.45507 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46701 * 90.00427 * 20 19 18 39 39 H 1.08998 * 109.46403 * 210.00313 * 20 19 18 40 40 H 1.08993 * 109.47228 * 329.99904 * 20 19 18 41 41 H 1.09003 * 109.47332 * 0.02562 * 21 19 18 42 42 H 1.09004 * 109.47340 * 120.00024 * 21 19 18 43 43 H 1.09003 * 109.47099 * 239.99421 * 21 19 18 44 44 H 1.07994 * 119.56926 * 180.28647 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.1744 3.5084 1.1802 7 1 3.4648 3.3367 1.9761 8 6 5.2040 4.4230 1.3537 9 7 6.2995 4.3256 0.6306 10 14 5.0347 5.7922 2.6132 11 1 5.5601 5.3281 3.9223 12 1 5.8067 6.9779 2.1621 13 1 3.6029 6.1589 2.7562 14 6 4.4225 3.4725 -1.2621 15 6 3.2146 4.1662 -1.8371 16 6 2.9416 5.4876 -1.5081 17 6 1.8233 6.0872 -2.0579 18 6 1.0138 5.3504 -2.9168 19 7 -0.1131 5.9407 -3.4771 20 6 -0.3844 7.3626 -3.2506 21 6 -1.0294 5.1412 -4.2938 22 7 1.3072 4.0920 -3.2053 23 6 2.3707 3.4961 -2.6997 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8898 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9338 0.9285 0.8891 32 1 3.9329 0.9289 -0.8909 33 1 7.0189 4.9650 0.7516 34 1 5.2096 4.2043 -1.0805 35 1 4.7800 2.7216 -1.9667 36 1 3.5880 6.0344 -0.8376 37 1 1.5811 7.1132 -1.8232 38 1 0.0903 7.9523 -4.0348 39 1 -1.4606 7.5342 -3.2679 40 1 0.0153 7.6587 -2.2808 41 1 -0.6661 4.1149 -4.3486 42 1 -2.0216 5.1513 -3.8424 43 1 -1.0828 5.5622 -5.2978 44 1 2.5812 2.4696 -2.9611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139458871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = 57.128661 kcal Electronic energy + Delta-G solvation = -22265.417112 eV Core-core repulsion = 19218.401901 eV Total energy + Delta-G solvation = -3047.015211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.71295 -36.79943 -35.71413 -34.05772 -31.89109 -31.34849 -30.26172 -28.07381 -27.85991 -26.11210 -24.27979 -23.34287 -22.43515 -21.15386 -20.33340 -19.98122 -17.09767 -16.70007 -16.06173 -15.07722 -14.92066 -14.82125 -14.39732 -14.04713 -13.78654 -13.58411 -13.52611 -13.22368 -12.80131 -12.49884 -12.40475 -12.23191 -11.95542 -11.89026 -11.70975 -11.36830 -11.18634 -10.99374 -10.70969 -10.57484 -10.46172 -10.30147 -10.10293 -9.91615 -9.81084 -9.20081 -9.02600 -8.77737 -8.46672 -6.99158 -6.59485 -5.80204 -3.32681 1.93679 2.18937 3.25123 3.33104 3.41771 3.45835 4.44654 4.58244 4.93768 5.25875 5.27804 5.33719 5.37508 5.40976 5.43571 5.59996 5.63441 5.68976 5.70178 5.80777 5.81435 5.90365 6.00848 6.02755 6.19297 6.20634 6.30478 6.37993 6.41927 6.43377 6.63818 6.67769 6.71461 6.79879 7.03148 7.16839 7.26836 7.28241 7.38069 7.68289 7.81257 7.82479 8.49853 8.71683 9.17720 9.81768 10.38496 11.19413 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.006998 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.552600 B = 4000.029508 C = 5534.745819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.148 3.852 5 N -0.576 5.576 6 C -0.248 4.248 7 H 0.059 0.941 8 C 0.010 3.990 9 N -0.885 5.885 10 Si 0.887 3.113 11 H -0.286 1.286 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.181 3.819 15 C -0.167 4.167 16 C -0.018 4.018 17 C -0.241 4.241 18 C 0.375 3.625 19 N -0.628 5.628 20 C 0.101 3.899 21 C 0.101 3.899 22 N -0.547 5.547 23 C 0.136 3.864 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.255 0.745 34 H 0.106 0.894 35 H 0.033 0.967 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.802 0.765 -7.229 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.022 3.978 5 N -0.295 5.295 6 C -0.378 4.378 7 H 0.076 0.924 8 C -0.190 4.190 9 N -0.528 5.528 10 Si 0.717 3.283 11 H -0.212 1.212 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.054 3.946 15 C -0.174 4.174 16 C -0.045 4.045 17 C -0.265 4.265 18 C 0.143 3.857 19 N -0.346 5.346 20 C -0.042 4.042 21 C -0.043 4.043 22 N -0.264 5.264 23 C -0.021 4.021 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.051 0.949 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.280 0.448 -7.826 13.736 hybrid contribution 0.246 1.362 1.285 1.888 sum -11.034 1.810 -6.542 12.955 Atomic orbital electron populations 1.21755 0.96850 1.00463 1.01511 1.21491 0.94973 0.98392 1.01121 1.22249 0.99514 0.94402 1.01725 1.20895 0.91198 0.86916 0.98781 1.43770 1.75401 1.08149 1.02173 1.18980 1.06825 1.18795 0.93176 0.92351 1.25024 0.94234 1.01470 0.98284 1.69993 1.04199 1.36033 1.42587 0.86537 0.77803 0.82448 0.81557 1.21235 1.21392 1.20359 1.19932 0.92388 0.96719 0.85566 1.21905 1.02370 0.94808 0.98343 1.21264 0.94318 0.94465 0.94438 1.21359 0.99371 1.01405 1.04404 1.18135 0.87293 0.89387 0.90919 1.45931 1.24064 1.08847 1.55752 1.21550 1.00699 0.80644 1.01351 1.21471 0.92006 0.97646 0.93145 1.66966 1.21017 1.09600 1.28768 1.22149 0.88635 0.98383 0.92938 0.93620 0.93199 0.93094 0.92701 0.92620 0.92761 0.92546 0.93853 0.94689 0.93525 0.87658 0.94866 0.85444 0.86187 0.93716 0.91798 0.91267 0.89274 0.93909 0.93919 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -2.00 16 3 C -0.14 -2.57 5.50 -26.73 -0.15 -2.72 16 4 C 0.15 3.07 5.72 -4.04 -0.02 3.04 16 5 N -0.58 -13.79 2.44 -174.61 -0.43 -14.22 16 6 C -0.25 -6.55 9.47 -15.06 -0.14 -6.69 16 7 H 0.06 1.58 7.93 -52.48 -0.42 1.16 16 8 C 0.01 0.25 4.94 -17.43 -0.09 0.17 16 9 N -0.89 -24.47 11.35 55.49 0.63 -23.84 16 10 Si 0.89 20.97 29.61 -169.99 -5.03 15.94 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 C 0.18 4.10 5.48 -5.19 -0.03 4.07 16 15 C -0.17 -3.44 5.46 -104.46 -0.57 -4.01 16 16 C -0.02 -0.36 9.85 -39.32 -0.39 -0.75 16 17 C -0.24 -4.33 9.27 -39.23 -0.36 -4.69 16 18 C 0.38 6.68 7.37 -155.01 -1.14 5.54 16 19 N -0.63 -9.17 3.39 -189.66 -0.64 -9.81 16 20 C 0.10 1.12 10.33 59.85 0.62 1.74 16 21 C 0.10 1.25 10.71 59.84 0.64 1.89 16 22 N -0.55 -10.22 8.85 -12.44 -0.11 -10.33 16 23 C 0.14 2.57 9.06 -17.57 -0.16 2.41 16 24 H 0.04 0.54 8.14 -51.92 -0.42 0.11 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.09 6.18 -51.93 -0.32 0.77 16 31 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 33 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.11 2.70 5.30 -51.93 -0.28 2.42 16 35 H 0.03 0.71 7.80 -51.93 -0.41 0.31 16 36 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 37 H 0.12 1.85 6.02 -52.49 -0.32 1.54 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.56 8.07 -51.93 -0.42 0.15 16 40 H 0.07 0.76 5.98 -51.93 -0.31 0.45 16 41 H 0.09 1.24 6.82 -51.93 -0.35 0.89 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.14 2.47 8.03 -52.49 -0.42 2.05 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -28.84 353.69 -9.26 -38.10 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.43 Total: 2.49 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.58 Total: -3.67 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.55 Total: -58.19 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.84 -9.26 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139458871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.229 kcal (2) G-P(sol) polarization free energy of solvation -28.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds