Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46930 * 2 1 4 4 C 1.53005 * 109.47199 * 180.02562 * 3 2 1 5 5 N 1.46489 * 109.47472 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00323 * 84.21488 * 5 4 3 7 7 H 1.08003 * 119.99857 * 325.56291 * 6 5 4 8 8 C 1.38808 * 120.00584 * 145.56090 * 6 5 4 9 9 N 1.31623 * 119.99532 * 336.91022 * 8 6 5 10 10 Si 1.86804 * 120.00340 * 156.90615 * 8 6 5 11 11 H 1.48496 * 109.46695 * 90.00248 * 10 8 6 12 12 H 1.48502 * 109.47023 * 210.00274 * 10 8 6 13 13 H 1.48494 * 109.46872 * 330.00252 * 10 8 6 14 14 C 1.46510 * 120.00173 * 264.21588 * 5 4 3 15 15 C 1.50702 * 109.46780 * 90.00063 * 14 5 4 16 16 C 1.38880 * 120.33949 * 90.00502 * 15 14 5 17 17 C 1.38292 * 118.50799 * 179.97438 * 16 15 14 18 18 C 1.39138 * 119.09806 * 0.02562 * 17 16 15 19 19 N 1.39005 * 119.70945 * 180.02562 * 18 17 16 20 20 C 1.46507 * 119.99532 * 4.99477 * 19 18 17 21 21 C 1.46493 * 120.00056 * 184.99615 * 19 18 17 22 22 N 1.32404 * 120.58696 * 0.02562 * 18 17 16 23 23 C 1.31973 * 121.62105 * 359.68871 * 22 18 17 24 24 H 1.09009 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47190 * 299.99408 * 1 2 3 26 26 H 1.09000 * 109.47195 * 59.99946 * 1 2 3 27 27 H 1.09002 * 109.46818 * 240.00198 * 2 1 3 28 28 H 1.08994 * 109.47509 * 120.00700 * 2 1 3 29 29 H 1.09002 * 109.47208 * 60.00437 * 3 2 1 30 30 H 1.09000 * 109.47225 * 300.00036 * 3 2 1 31 31 H 1.09003 * 109.47316 * 300.00507 * 4 3 2 32 32 H 1.09002 * 109.46739 * 60.00082 * 4 3 2 33 33 H 0.97006 * 119.99715 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.46974 * 209.99654 * 14 5 4 35 35 H 1.08992 * 109.46855 * 329.99983 * 14 5 4 36 36 H 1.08001 * 120.74392 * 359.94681 * 16 15 14 37 37 H 1.08001 * 120.45507 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46701 * 90.00427 * 20 19 18 39 39 H 1.08998 * 109.46403 * 210.00313 * 20 19 18 40 40 H 1.08993 * 109.47228 * 329.99904 * 20 19 18 41 41 H 1.09003 * 109.47332 * 0.02562 * 21 19 18 42 42 H 1.09004 * 109.47340 * 120.00024 * 21 19 18 43 43 H 1.09003 * 109.47099 * 239.99421 * 21 19 18 44 44 H 1.07994 * 119.56926 * 180.28647 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.1744 3.5084 1.1802 7 1 3.4648 3.3367 1.9761 8 6 5.2040 4.4230 1.3537 9 7 6.2995 4.3256 0.6306 10 14 5.0347 5.7922 2.6132 11 1 5.5601 5.3281 3.9223 12 1 5.8067 6.9779 2.1621 13 1 3.6029 6.1589 2.7562 14 6 4.4225 3.4725 -1.2621 15 6 3.2146 4.1662 -1.8371 16 6 2.9416 5.4876 -1.5081 17 6 1.8233 6.0872 -2.0579 18 6 1.0138 5.3504 -2.9168 19 7 -0.1131 5.9407 -3.4771 20 6 -0.3844 7.3626 -3.2506 21 6 -1.0294 5.1412 -4.2938 22 7 1.3072 4.0920 -3.2053 23 6 2.3707 3.4961 -2.6997 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8898 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9338 0.9285 0.8891 32 1 3.9329 0.9289 -0.8909 33 1 7.0189 4.9650 0.7516 34 1 5.2096 4.2043 -1.0805 35 1 4.7800 2.7216 -1.9667 36 1 3.5880 6.0344 -0.8376 37 1 1.5811 7.1132 -1.8232 38 1 0.0903 7.9523 -4.0348 39 1 -1.4606 7.5342 -3.2679 40 1 0.0153 7.6587 -2.2808 41 1 -0.6661 4.1149 -4.3486 42 1 -2.0216 5.1513 -3.8424 43 1 -1.0828 5.5622 -5.2978 44 1 2.5812 2.4696 -2.9611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139458871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = 43.572596 kcal Electronic energy + Delta-G solvation = -22266.004947 eV Core-core repulsion = 19218.401901 eV Total energy + Delta-G solvation = -3047.603046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13773 -38.33647 -37.06814 -35.56470 -33.50937 -33.06166 -31.72354 -29.42120 -29.01048 -27.73182 -25.88566 -24.72724 -23.86692 -22.63911 -21.74108 -21.61692 -18.69534 -18.26547 -17.48329 -16.75839 -16.30703 -16.17155 -15.84248 -15.48660 -15.34565 -15.17806 -14.97673 -14.52663 -14.16637 -13.87576 -13.74407 -13.40862 -13.30751 -13.09881 -12.94725 -12.85542 -12.75078 -12.68470 -12.43270 -12.19416 -12.02504 -11.90700 -11.77550 -11.58499 -11.31116 -10.62270 -10.48040 -10.47773 -10.22459 -8.54654 -8.28106 -7.79586 -5.36584 0.46863 0.68254 1.42833 1.46901 1.55531 2.12800 2.51852 3.06022 3.27446 3.69308 3.84688 4.09303 4.17531 4.25415 4.26962 4.32403 4.43855 4.47381 4.51707 4.56258 4.58677 4.67246 4.73910 4.83219 4.91475 4.92103 5.00043 5.04564 5.06545 5.08887 5.10163 5.19640 5.26782 5.40992 5.52423 5.61211 5.67153 5.75148 5.82248 5.86482 6.17733 6.48149 6.51775 7.19707 7.29343 7.90738 8.42041 9.15776 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.006998 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.552600 B = 4000.029508 C = 5534.745819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.122 4.122 4 C 0.147 3.853 5 N -0.590 5.590 6 C -0.254 4.254 7 H 0.046 0.954 8 C -0.029 4.029 9 N -0.912 5.912 10 Si 0.941 3.059 11 H -0.285 1.285 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.189 3.811 15 C -0.186 4.186 16 C -0.033 4.033 17 C -0.242 4.242 18 C 0.374 3.626 19 N -0.629 5.629 20 C 0.094 3.906 21 C 0.097 3.903 22 N -0.554 5.554 23 C 0.143 3.857 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.109 0.891 37 H 0.145 0.855 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.140 1.004 -8.223 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.162 4.162 4 C 0.021 3.979 5 N -0.310 5.310 6 C -0.384 4.384 7 H 0.064 0.936 8 C -0.227 4.227 9 N -0.556 5.556 10 Si 0.769 3.231 11 H -0.212 1.212 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.062 3.938 15 C -0.193 4.193 16 C -0.060 4.060 17 C -0.266 4.266 18 C 0.140 3.860 19 N -0.345 5.345 20 C -0.049 4.049 21 C -0.045 4.045 22 N -0.271 5.271 23 C -0.014 4.014 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.128 0.872 37 H 0.162 0.838 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.669 0.699 -8.843 16.295 hybrid contribution 0.868 1.306 1.503 2.173 sum -12.801 2.006 -7.340 14.891 Atomic orbital electron populations 1.21713 0.95453 1.01907 1.01102 1.21452 0.96154 0.95832 1.02041 1.22026 0.97608 0.96561 1.00042 1.20995 0.92618 0.85452 0.98811 1.43956 1.75756 1.09363 1.01923 1.19049 1.06245 1.19297 0.93850 0.93637 1.25548 0.94005 1.03058 1.00044 1.70098 1.04738 1.36647 1.44124 0.85697 0.77535 0.80211 0.79611 1.21204 1.21263 1.20250 1.19699 0.92648 0.96137 0.85301 1.21612 1.02299 0.95250 1.00124 1.21225 0.95234 0.94600 0.94915 1.21524 0.98494 1.02542 1.04075 1.18455 0.88045 0.89120 0.90412 1.46311 1.22938 1.10334 1.54912 1.21810 1.02731 0.78636 1.01706 1.21610 0.92199 0.96584 0.94151 1.67073 1.20812 1.10206 1.29016 1.22230 0.88273 0.98782 0.92105 0.91246 0.93752 0.93378 0.91280 0.92197 0.95281 0.93257 0.95105 0.93211 0.93845 0.90715 0.94315 0.87243 0.83780 0.92457 0.89025 0.91412 0.91041 0.91902 0.91817 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.34 5.93 30.59 0.18 -3.16 16 3 C -0.12 -4.51 5.50 30.59 0.17 -4.34 16 4 C 0.15 6.12 5.72 86.38 0.49 6.61 16 5 N -0.59 -28.98 2.44 -706.34 -1.72 -30.71 16 6 C -0.25 -13.81 9.47 84.03 0.80 -13.01 16 7 H 0.05 2.55 7.93 -2.91 -0.02 2.52 16 8 C -0.03 -1.59 4.94 84.86 0.42 -1.17 16 9 N -0.91 -51.93 11.35 21.65 0.25 -51.68 16 10 Si 0.94 44.09 29.61 68.60 2.03 46.12 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.19 8.82 5.48 85.63 0.47 9.29 16 15 C -0.19 -7.77 5.46 -19.76 -0.11 -7.88 16 16 C -0.03 -1.35 9.85 22.44 0.22 -1.13 16 17 C -0.24 -8.46 9.27 22.50 0.21 -8.25 16 18 C 0.37 12.68 7.37 133.06 0.98 13.66 16 19 N -0.63 -16.51 3.39 -753.97 -2.56 -19.06 16 20 C 0.09 1.73 10.33 127.77 1.32 3.05 16 21 C 0.10 2.10 10.71 127.77 1.37 3.47 16 22 N -0.55 -19.99 8.85 -193.26 -1.71 -21.70 16 23 C 0.14 5.35 9.06 84.62 0.77 6.12 16 24 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.88 6.18 -2.39 -0.01 1.86 16 31 H 0.03 1.34 8.09 -2.39 -0.02 1.32 16 32 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 33 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 34 H 0.08 4.00 5.30 -2.39 -0.01 3.99 16 35 H 0.04 1.70 7.80 -2.39 -0.02 1.68 16 36 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 37 H 0.14 4.20 6.02 -2.91 -0.02 4.18 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.22 8.07 -2.39 -0.02 1.20 16 40 H 0.07 1.29 5.98 -2.39 -0.01 1.28 16 41 H 0.07 1.83 6.82 -2.39 -0.02 1.81 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.16 5.26 8.03 -2.91 -0.02 5.23 16 Total: -1.00 -62.75 353.69 5.24 -57.51 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.95 Total: 19.18 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 8.00 Total: 0.34 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -5.75 Total: -123.16 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -62.75 5.24 -57.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139458871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.084 kcal (2) G-P(sol) polarization free energy of solvation -62.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds