Wall clock time and date at job start Mon Mar 30 2020 01:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46499 * 109.46992 * 124.99738 * 3 2 1 5 5 C 1.34957 * 126.03564 * 124.99847 * 4 3 2 6 6 C 1.35316 * 107.74619 * 179.97438 * 5 4 3 7 7 C 1.50695 * 126.04080 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.46974 * 89.99928 * 7 6 5 9 9 C 1.46898 * 111.00375 * 293.95806 * 8 7 6 10 10 C 1.50699 * 109.47123 * 69.99793 * 9 8 7 11 11 H 1.07998 * 119.99902 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00170 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00125 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47426 * 89.99974 * 14 12 10 16 16 H 1.48506 * 109.46979 * 210.00177 * 14 12 10 17 17 H 1.48500 * 109.46646 * 329.99721 * 14 12 10 18 18 C 1.46901 * 110.99914 * 169.99898 * 8 7 6 19 19 C 1.52997 * 109.46881 * 190.00217 * 18 8 7 20 20 C 1.53002 * 109.46877 * 180.02562 * 19 18 8 21 21 C 1.53004 * 109.47138 * 180.02562 * 20 19 18 22 22 C 1.39878 * 107.91913 * 0.02562 * 6 5 4 23 23 N 1.30838 * 108.20024 * 359.73750 * 22 6 5 24 24 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 28 28 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 29 29 H 1.07996 * 126.12493 * 359.95599 * 5 4 3 30 30 H 1.08996 * 109.47692 * 210.00403 * 7 6 5 31 31 H 1.09004 * 109.46912 * 330.00380 * 7 6 5 32 32 H 1.08994 * 109.47022 * 189.99977 * 9 8 7 33 33 H 1.09007 * 109.46765 * 310.00053 * 9 8 7 34 34 H 0.96998 * 120.00197 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.47405 * 310.00394 * 18 8 7 36 36 H 1.09001 * 109.46716 * 70.00312 * 18 8 7 37 37 H 1.08995 * 109.47424 * 299.99678 * 19 18 8 38 38 H 1.09001 * 109.47368 * 60.00494 * 19 18 8 39 39 H 1.09003 * 109.47352 * 300.00142 * 20 19 18 40 40 H 1.09002 * 109.47259 * 60.00270 * 20 19 18 41 41 H 1.08996 * 109.46868 * 300.00017 * 21 20 19 42 42 H 1.09001 * 109.47244 * 60.00343 * 21 20 19 43 43 H 1.09002 * 109.47070 * 180.02562 * 21 20 19 44 44 H 1.07994 * 125.89396 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3234 1.5512 1.0610 6 6 4.8179 1.4956 2.3194 7 6 6.2600 1.6826 2.7144 8 7 6.5126 3.1037 2.9877 9 6 6.3781 3.9070 1.7652 10 6 4.9287 3.9604 1.3562 11 1 4.1821 3.4484 1.9452 12 6 4.5558 4.6620 0.2294 13 7 3.2909 4.7082 -0.1279 14 14 5.8473 5.5458 -0.7906 15 1 6.3655 4.6278 -1.8365 16 1 5.2388 6.7374 -1.4350 17 1 6.9642 5.9749 0.0890 18 6 7.8337 3.2952 3.6008 19 6 7.9617 4.7369 4.0967 20 6 9.3379 4.9365 4.7347 21 6 9.4657 6.3781 5.2311 22 6 3.7539 1.2328 3.1886 23 7 2.6592 1.1398 2.4781 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 2.6213 1.4026 -0.9314 28 1 1.3585 2.1317 0.0896 29 1 4.8912 1.7374 0.1614 30 1 6.4704 1.0974 3.6096 31 1 6.9055 1.3486 1.9020 32 1 6.7401 4.9178 1.9530 33 1 6.9647 3.4535 0.9662 34 1 3.0285 5.2021 -0.9204 35 1 7.9470 2.6105 4.4414 36 1 8.6096 3.0948 2.8619 37 1 7.8486 5.4216 3.2562 38 1 7.1858 4.9373 4.8356 39 1 9.4516 4.2518 5.5751 40 1 10.1136 4.7363 3.9955 41 1 9.3519 7.0631 4.3910 42 1 8.6901 6.5779 5.9705 43 1 10.4464 6.5204 5.6852 44 1 3.8235 1.1288 4.2612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139770219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:32 Heat of formation + Delta-G solvation = 91.005337 kcal Electronic energy + Delta-G solvation = -22189.790108 eV Core-core repulsion = 19144.243900 eV Total energy + Delta-G solvation = -3045.546208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.89178 -38.71564 -36.22597 -35.53093 -34.37854 -32.38486 -31.53010 -30.22313 -29.03878 -27.12908 -25.10950 -24.24221 -22.33854 -21.95960 -21.30135 -20.85855 -20.43114 -18.88436 -17.56654 -16.67266 -16.22319 -16.06312 -16.01608 -15.66252 -15.40930 -14.94865 -14.60551 -14.44512 -14.20443 -13.93905 -13.74372 -13.57626 -13.48690 -13.23418 -12.90276 -12.72058 -12.51297 -12.18217 -12.17590 -12.00561 -11.78814 -11.69835 -11.47602 -11.31529 -11.19446 -11.12567 -10.63280 -10.46419 -9.82248 -8.85630 -8.66733 -8.04332 -5.98080 1.17655 1.29605 1.38379 1.44047 1.46710 2.16673 2.29481 2.42692 3.23056 3.53121 3.84542 4.02077 4.08096 4.17788 4.22508 4.33331 4.36154 4.50333 4.53243 4.58151 4.68018 4.74470 4.78997 4.88411 4.93066 4.98379 5.03503 5.04645 5.10529 5.14285 5.21434 5.32663 5.33617 5.48364 5.55136 5.59654 5.63231 5.75062 5.78504 6.15926 6.26700 6.52270 6.60494 6.87785 7.07969 7.20439 7.53908 9.03609 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.005659 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.116680 B = 4946.437081 C = 6161.148770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.175 4.175 3 C 0.175 3.825 4 N -0.364 5.364 5 C 0.138 3.862 6 C -0.247 4.247 7 C 0.153 3.847 8 N -0.541 5.541 9 C 0.169 3.831 10 C -0.487 4.487 11 H 0.080 0.920 12 C 0.023 3.977 13 N -0.927 5.927 14 Si 0.911 3.089 15 H -0.273 1.273 16 H -0.295 1.295 17 H -0.265 1.265 18 C 0.056 3.944 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.151 4.151 22 C 0.049 3.951 23 N -0.345 5.345 24 H 0.126 0.874 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.019 0.981 33 H -0.025 1.025 34 H 0.257 0.743 35 H 0.087 0.913 36 H 0.022 0.978 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -6.868 3.829 10.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C 0.054 3.946 4 N -0.145 5.145 5 C -0.011 4.011 6 C -0.258 4.258 7 C 0.025 3.975 8 N -0.265 5.265 9 C 0.042 3.958 10 C -0.525 4.525 11 H 0.097 0.903 12 C -0.174 4.174 13 N -0.568 5.568 14 Si 0.738 3.262 15 H -0.199 1.199 16 H -0.221 1.221 17 H -0.189 1.189 18 C -0.071 4.071 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.208 4.208 22 C -0.136 4.136 23 N -0.167 5.167 24 H 0.144 0.856 25 H 0.114 0.886 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.165 0.835 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.037 0.963 33 H -0.007 1.007 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.637 -6.835 3.938 9.150 hybrid contribution 1.662 1.076 -1.658 2.583 sum 6.299 -5.759 2.280 8.834 Atomic orbital electron populations 1.24043 0.95141 1.03059 0.97222 1.22977 0.96725 0.96990 1.02666 1.20538 0.91746 0.96503 0.85838 1.48271 1.05746 1.55200 1.05273 1.21876 0.84608 0.94890 0.99680 1.19561 0.97286 1.17417 0.91582 1.20090 0.90443 0.87986 0.98974 1.61972 1.28504 1.08024 1.27995 1.20008 0.95879 0.92992 0.86937 1.21789 0.93173 1.29123 1.08444 0.90253 1.25415 0.96011 0.97213 0.98801 1.70022 1.16579 1.44024 1.26224 0.86266 0.81071 0.79016 0.79835 1.19871 1.22142 1.18940 1.22148 0.88952 0.97669 0.98369 1.21592 0.97873 0.95938 0.99729 1.21456 0.95681 0.97691 1.00503 1.21764 1.02106 0.96148 1.00830 1.23776 0.89802 0.99851 1.00168 1.77067 1.24140 1.27896 0.87613 0.85578 0.88588 0.86585 0.88609 0.91779 0.83531 0.89294 0.95819 0.96339 1.00732 0.93425 0.89440 0.95930 0.94364 0.92362 0.90627 0.92051 0.93825 0.92791 0.91300 0.79415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 14.32 67.78 0.97 -3.04 16 2 C -0.17 -5.24 9.70 25.65 0.25 -4.99 16 3 C 0.17 6.57 6.95 85.63 0.59 7.16 16 4 N -0.36 -15.57 3.65 -351.79 -1.28 -16.85 16 5 C 0.14 5.96 7.67 83.54 0.64 6.60 16 6 C -0.25 -10.04 3.70 -20.14 -0.07 -10.12 16 7 C 0.15 5.49 5.44 85.55 0.47 5.95 16 8 N -0.54 -21.27 4.56 -905.37 -4.13 -25.40 16 9 C 0.17 7.79 3.65 85.56 0.31 8.10 16 10 C -0.49 -25.71 6.19 25.60 0.16 -25.56 16 11 H 0.08 4.63 4.87 -2.91 -0.01 4.61 16 12 C 0.02 1.25 5.47 84.65 0.46 1.72 16 13 N -0.93 -52.93 13.96 21.45 0.30 -52.63 16 14 Si 0.91 42.77 27.47 68.60 1.88 44.65 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 17 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 18 C 0.06 1.76 4.96 86.30 0.43 2.18 16 19 C -0.11 -3.44 5.17 30.59 0.16 -3.29 16 20 C -0.12 -2.62 5.93 30.60 0.18 -2.44 16 21 C -0.15 -3.19 9.91 71.98 0.71 -2.47 16 22 C 0.05 1.96 11.68 85.24 1.00 2.95 16 23 N -0.34 -15.10 12.41 -57.02 -0.71 -15.81 16 24 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 25 H 0.10 2.51 7.84 -2.91 -0.02 2.49 16 26 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.10 3.44 8.07 -2.39 -0.02 3.42 16 28 H 0.06 2.68 7.79 -2.39 -0.02 2.66 16 29 H 0.15 6.47 7.77 -2.91 -0.02 6.45 16 30 H 0.09 2.65 7.93 -2.39 -0.02 2.63 16 31 H 0.02 0.83 8.01 -2.38 -0.02 0.81 16 32 H 0.02 0.90 5.04 -2.39 -0.01 0.88 16 33 H -0.02 -1.15 7.41 -2.38 -0.02 -1.17 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.09 2.29 7.93 -2.39 -0.02 2.27 16 36 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 37 H 0.04 1.35 6.31 -2.39 -0.02 1.33 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.19 6.33 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -62.67 351.99 3.21 -59.46 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.89 Total: 23.80 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 6.26 Total: -17.23 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -5.82 Total: -110.68 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Total: -62.67 3.21 -59.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139770219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.469 kcal (2) G-P(sol) polarization free energy of solvation -62.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds