Wall clock time and date at job start Mon Mar 30 2020 01:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99909 * 2 1 4 4 C 1.46900 * 111.00011 * 123.95582 * 2 1 3 5 5 C 1.52999 * 109.47114 * 153.54673 * 4 2 1 6 6 C 1.53004 * 109.46742 * 187.25935 * 5 4 2 7 7 C 1.52996 * 109.47050 * 67.25953 * 5 4 2 8 8 C 1.53005 * 109.47022 * 307.25541 * 5 4 2 9 9 N 1.46497 * 109.46769 * 180.02562 * 8 5 4 10 10 C 1.39088 * 120.00104 * 180.02562 * 9 8 5 11 11 C 1.38742 * 119.65540 * 359.97438 * 10 9 8 12 12 C 1.40773 * 118.66907 * 180.25139 * 11 10 9 13 13 C 1.41561 * 120.99285 * 179.73064 * 12 11 10 14 14 H 1.08000 * 120.00071 * 32.67833 * 13 12 11 15 15 C 1.40024 * 119.99513 * 212.68371 * 13 12 11 16 16 N 1.30743 * 120.00523 * 16.49813 * 15 13 12 17 17 Si 1.86801 * 119.99575 * 196.49072 * 15 13 12 18 18 H 1.48502 * 109.46806 * 90.00489 * 17 15 13 19 19 H 1.48502 * 109.47501 * 210.00022 * 17 15 13 20 20 H 1.48501 * 109.47562 * 330.00605 * 17 15 13 21 21 C 1.41185 * 118.01563 * 359.51609 * 12 11 10 22 22 C 1.36559 * 119.14301 * 0.46822 * 21 12 11 23 23 N 1.32094 * 121.27004 * 359.76852 * 22 21 12 24 24 H 1.08998 * 109.47247 * 296.04249 * 1 2 3 25 25 H 1.08998 * 109.47160 * 56.04633 * 1 2 3 26 26 H 1.09001 * 109.47407 * 176.04569 * 1 2 3 27 27 H 1.09001 * 109.46938 * 216.02028 * 3 2 1 28 28 H 1.08997 * 109.47303 * 336.02144 * 3 2 1 29 29 H 1.08999 * 109.46545 * 96.02722 * 3 2 1 30 30 H 1.09010 * 109.46942 * 33.54423 * 4 2 1 31 31 H 1.08998 * 109.47032 * 273.54766 * 4 2 1 32 32 H 1.09003 * 109.46837 * 185.24083 * 6 5 4 33 33 H 1.08994 * 109.46862 * 305.23644 * 6 5 4 34 34 H 1.08994 * 109.47129 * 65.23956 * 6 5 4 35 35 H 1.09007 * 109.46932 * 290.35565 * 7 5 4 36 36 H 1.09000 * 109.47300 * 50.35089 * 7 5 4 37 37 H 1.08993 * 109.46885 * 170.35953 * 7 5 4 38 38 H 1.09000 * 109.46564 * 60.00381 * 8 5 4 39 39 H 1.08994 * 109.47446 * 300.00101 * 8 5 4 40 40 H 0.97003 * 120.00559 * 359.97438 * 9 8 5 41 41 H 1.08008 * 120.66217 * 359.97438 * 11 10 9 42 42 H 0.97003 * 119.99961 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.42958 * 180.26092 * 21 12 11 44 44 H 1.08000 * 119.36748 * 179.79845 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.3839 -1.3064 0.7897 6 6 3.8556 -2.2509 1.8971 7 6 4.3669 -0.1413 0.6600 8 6 3.3174 -2.0677 -0.5359 9 7 4.6468 -2.5857 -0.8686 10 6 4.8361 -3.3162 -2.0370 11 6 3.7609 -3.5506 -2.8819 12 6 3.9748 -4.2970 -4.0561 13 6 2.9118 -4.5701 -4.9501 14 1 2.1139 -3.8531 -5.0755 15 6 2.8947 -5.7701 -5.6716 16 7 3.6563 -6.7663 -5.3017 17 14 1.7833 -5.9475 -7.1625 18 1 2.5155 -5.5148 -8.3799 19 1 1.3748 -7.3677 -7.3093 20 1 0.5763 -5.1011 -6.9839 21 6 5.2823 -4.7611 -4.3179 22 6 6.2785 -4.4802 -3.4271 23 7 6.0418 -3.7809 -2.3318 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0709 27 1 2.9016 1.4128 -0.6044 28 1 1.2491 2.0471 -0.4176 29 1 2.2263 1.6719 1.0220 30 1 1.3260 -1.5980 1.3563 31 1 2.0663 -0.1174 2.0107 32 1 4.8806 -2.5629 1.6963 33 1 3.8141 -1.7353 2.8565 34 1 3.2084 -3.1274 1.9273 35 1 4.1299 0.4363 -0.2335 36 1 4.2886 0.4996 1.5382 37 1 5.3824 -0.5296 0.5828 38 1 2.9813 -1.3948 -1.3248 39 1 2.6171 -2.8978 -0.4435 40 1 5.3952 -2.4186 -0.2745 41 1 2.7784 -3.1719 -2.6412 42 1 3.6447 -7.5974 -5.8018 43 1 5.4912 -5.3337 -5.2095 44 1 7.2793 -4.8362 -3.6222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157944679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:24 Heat of formation + Delta-G solvation = 30.867610 kcal Electronic energy + Delta-G solvation = -21899.280056 eV Core-core repulsion = 18851.126080 eV Total energy + Delta-G solvation = -3048.153976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.19383 -38.11780 -35.80943 -34.00548 -32.79420 -30.50718 -28.35021 -28.10932 -27.12033 -26.59524 -25.73287 -25.02562 -22.10182 -21.28875 -20.66858 -18.67028 -17.53306 -16.09633 -15.67411 -15.47745 -15.07563 -14.78067 -14.49147 -14.12363 -13.84393 -13.63112 -13.29118 -13.04660 -12.75994 -12.63122 -12.53921 -12.36361 -12.27394 -12.09442 -11.75334 -11.55925 -11.36614 -11.23818 -11.13718 -10.78686 -10.65963 -10.53636 -10.31926 -10.15688 -9.75123 -9.24530 -8.79565 -8.33768 -7.81546 -7.78161 -6.72159 -6.31856 -4.43811 2.89838 3.11261 3.14861 3.15371 3.43534 3.86753 3.98811 4.23111 4.80529 4.82469 4.88152 5.00030 5.08600 5.23989 5.29079 5.41575 5.51155 5.58436 5.64757 5.69176 5.75883 5.82488 5.85136 5.90937 6.01920 6.07120 6.18036 6.26392 6.30977 6.50476 6.60730 6.89424 6.96564 6.98621 6.99963 7.09576 7.15820 7.30728 7.64127 7.96677 8.13891 8.25130 8.58075 8.83045 8.95847 9.00210 9.85910 10.27709 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.004550 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.568477 B = 6152.835780 C = 7229.832260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.019 3.981 4 C 0.068 3.932 5 C -0.068 4.068 6 C -0.141 4.141 7 C -0.144 4.144 8 C 0.162 3.838 9 N -0.743 5.743 10 C 0.398 3.602 11 C -0.324 4.324 12 C 0.164 3.836 13 C -0.469 4.469 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.794 5.794 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.263 1.263 21 C -0.241 4.241 22 C 0.116 3.884 23 N -0.622 5.622 24 H 0.020 0.980 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.386 0.614 41 H 0.099 0.901 42 H 0.280 0.720 43 H 0.110 0.890 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 10.922 10.582 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.129 4.129 4 C -0.060 4.060 5 C -0.069 4.069 6 C -0.199 4.199 7 C -0.201 4.201 8 C 0.037 3.963 9 N -0.380 5.380 10 C 0.167 3.833 11 C -0.351 4.351 12 C 0.156 3.844 13 C -0.501 4.501 14 H 0.097 0.903 15 C -0.136 4.136 16 N -0.419 5.419 17 Si 0.731 3.269 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.265 4.265 22 C -0.034 4.034 23 N -0.345 5.345 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.220 0.780 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.128 0.872 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.643 10.649 10.644 15.491 hybrid contribution -1.226 -0.033 -0.313 1.266 sum -4.869 10.616 10.331 15.593 Atomic orbital electron populations 1.22462 0.87333 1.02480 1.00000 1.61890 1.07586 1.13772 1.43270 1.22732 1.01075 0.88668 1.00401 1.22277 0.95719 0.97351 0.90695 1.20743 0.94621 0.95659 0.95912 1.21846 1.01927 0.98892 0.97190 1.22083 0.98875 0.97559 1.01623 1.21007 0.84408 0.96217 0.94687 1.44227 1.09592 1.60787 1.23417 1.17993 0.89845 0.89457 0.86006 1.21261 0.97269 1.17543 0.99035 1.17588 0.92167 0.85788 0.88876 1.19494 1.07272 1.02745 1.20565 0.90310 1.25858 0.95449 0.95109 0.97226 1.69800 1.33846 1.02768 1.35518 0.86349 0.80791 0.78035 0.81710 1.19299 1.20406 1.18650 1.21578 0.93515 1.09128 1.02301 1.21318 0.97585 0.94604 0.89867 1.66759 1.22091 1.22071 1.23621 0.96122 0.91355 0.91182 0.90645 0.92534 0.94869 0.90922 0.94154 0.92037 0.93115 0.92418 0.91314 0.93496 0.92667 0.91209 0.93543 0.77992 0.88252 0.90951 0.87226 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.30 60.06 0.56 0.81 16 2 N -0.54 -6.11 3.83 -251.26 -0.96 -7.07 16 3 C 0.02 0.19 8.74 60.06 0.52 0.71 16 4 C 0.07 0.73 4.22 -3.82 -0.02 0.72 16 5 C -0.07 -0.83 0.61 -154.51 -0.09 -0.93 16 6 C -0.14 -1.61 8.21 37.16 0.31 -1.31 16 7 C -0.14 -1.66 7.11 37.16 0.26 -1.40 16 8 C 0.16 2.64 3.52 -4.04 -0.01 2.63 16 9 N -0.74 -14.24 5.21 -60.48 -0.32 -14.55 16 10 C 0.40 9.60 7.65 -154.97 -1.19 8.42 16 11 C -0.32 -8.38 9.12 -38.44 -0.35 -8.73 16 12 C 0.16 4.55 5.48 -106.55 -0.58 3.96 16 13 C -0.47 -12.79 9.08 -37.65 -0.34 -13.13 16 14 H 0.08 2.08 7.90 -52.49 -0.41 1.66 16 15 C 0.08 2.11 5.14 -17.35 -0.09 2.02 16 16 N -0.79 -21.08 11.54 55.55 0.64 -20.44 16 17 Si 0.91 19.00 29.59 -169.99 -5.03 13.97 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 C -0.24 -6.47 8.70 -39.07 -0.34 -6.81 16 22 C 0.12 2.92 11.10 -18.05 -0.20 2.72 16 23 N -0.62 -15.61 10.37 -12.82 -0.13 -15.75 16 24 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.07 0.63 7.97 -51.93 -0.41 0.22 16 26 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 27 H 0.08 0.79 5.84 -51.93 -0.30 0.49 16 28 H 0.06 0.49 7.59 -51.93 -0.39 0.10 16 29 H 0.03 0.29 7.33 -51.93 -0.38 -0.09 16 30 H 0.07 0.77 7.77 -51.92 -0.40 0.37 16 31 H 0.04 0.39 7.37 -51.93 -0.38 0.01 16 32 H 0.06 0.76 6.99 -51.93 -0.36 0.39 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.84 5.31 -51.92 -0.28 0.56 16 36 H 0.05 0.46 8.07 -51.93 -0.42 0.04 16 37 H 0.05 0.67 7.11 -51.93 -0.37 0.30 16 38 H 0.07 1.25 7.21 -51.93 -0.37 0.87 16 39 H 0.05 0.82 7.93 -51.93 -0.41 0.41 16 40 H 0.39 6.88 6.43 -40.82 -0.26 6.61 16 41 H 0.10 2.46 6.71 -52.48 -0.35 2.11 16 42 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 43 H 0.11 2.99 6.87 -52.49 -0.36 2.62 16 44 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -29.53 343.07 -9.32 -38.85 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -7.12 Total: 10.14 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.56 Total: -10.32 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.77 Total: -57.82 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.53 -9.32 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157944679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.717 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds