Wall clock time and date at job start Mon Mar 30 2020 01:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99909 * 2 1 4 4 C 1.46900 * 111.00011 * 123.95582 * 2 1 3 5 5 C 1.52999 * 109.47114 * 153.54673 * 4 2 1 6 6 C 1.53004 * 109.46742 * 187.25935 * 5 4 2 7 7 C 1.52996 * 109.47050 * 67.25953 * 5 4 2 8 8 C 1.53005 * 109.47022 * 307.25541 * 5 4 2 9 9 N 1.46497 * 109.46769 * 180.02562 * 8 5 4 10 10 C 1.39088 * 120.00104 * 180.02562 * 9 8 5 11 11 C 1.38742 * 119.65540 * 359.97438 * 10 9 8 12 12 C 1.40773 * 118.66907 * 180.25139 * 11 10 9 13 13 C 1.41561 * 120.99285 * 179.73064 * 12 11 10 14 14 H 1.08000 * 120.00071 * 32.67833 * 13 12 11 15 15 C 1.40024 * 119.99513 * 212.68371 * 13 12 11 16 16 N 1.30743 * 120.00523 * 16.49813 * 15 13 12 17 17 Si 1.86801 * 119.99575 * 196.49072 * 15 13 12 18 18 H 1.48502 * 109.46806 * 90.00489 * 17 15 13 19 19 H 1.48502 * 109.47501 * 210.00022 * 17 15 13 20 20 H 1.48501 * 109.47562 * 330.00605 * 17 15 13 21 21 C 1.41185 * 118.01563 * 359.51609 * 12 11 10 22 22 C 1.36559 * 119.14301 * 0.46822 * 21 12 11 23 23 N 1.32094 * 121.27004 * 359.76852 * 22 21 12 24 24 H 1.08998 * 109.47247 * 296.04249 * 1 2 3 25 25 H 1.08998 * 109.47160 * 56.04633 * 1 2 3 26 26 H 1.09001 * 109.47407 * 176.04569 * 1 2 3 27 27 H 1.09001 * 109.46938 * 216.02028 * 3 2 1 28 28 H 1.08997 * 109.47303 * 336.02144 * 3 2 1 29 29 H 1.08999 * 109.46545 * 96.02722 * 3 2 1 30 30 H 1.09010 * 109.46942 * 33.54423 * 4 2 1 31 31 H 1.08998 * 109.47032 * 273.54766 * 4 2 1 32 32 H 1.09003 * 109.46837 * 185.24083 * 6 5 4 33 33 H 1.08994 * 109.46862 * 305.23644 * 6 5 4 34 34 H 1.08994 * 109.47129 * 65.23956 * 6 5 4 35 35 H 1.09007 * 109.46932 * 290.35565 * 7 5 4 36 36 H 1.09000 * 109.47300 * 50.35089 * 7 5 4 37 37 H 1.08993 * 109.46885 * 170.35953 * 7 5 4 38 38 H 1.09000 * 109.46564 * 60.00381 * 8 5 4 39 39 H 1.08994 * 109.47446 * 300.00101 * 8 5 4 40 40 H 0.97003 * 120.00559 * 359.97438 * 9 8 5 41 41 H 1.08008 * 120.66217 * 359.97438 * 11 10 9 42 42 H 0.97003 * 119.99961 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.42958 * 180.26092 * 21 12 11 44 44 H 1.08000 * 119.36748 * 179.79845 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.3839 -1.3064 0.7897 6 6 3.8556 -2.2509 1.8971 7 6 4.3669 -0.1413 0.6600 8 6 3.3174 -2.0677 -0.5359 9 7 4.6468 -2.5857 -0.8686 10 6 4.8361 -3.3162 -2.0370 11 6 3.7609 -3.5506 -2.8819 12 6 3.9748 -4.2970 -4.0561 13 6 2.9118 -4.5701 -4.9501 14 1 2.1139 -3.8531 -5.0755 15 6 2.8947 -5.7701 -5.6716 16 7 3.6563 -6.7663 -5.3017 17 14 1.7833 -5.9475 -7.1625 18 1 2.5155 -5.5148 -8.3799 19 1 1.3748 -7.3677 -7.3093 20 1 0.5763 -5.1011 -6.9839 21 6 5.2823 -4.7611 -4.3179 22 6 6.2785 -4.4802 -3.4271 23 7 6.0418 -3.7809 -2.3318 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0709 27 1 2.9016 1.4128 -0.6044 28 1 1.2491 2.0471 -0.4176 29 1 2.2263 1.6719 1.0220 30 1 1.3260 -1.5980 1.3563 31 1 2.0663 -0.1174 2.0107 32 1 4.8806 -2.5629 1.6963 33 1 3.8141 -1.7353 2.8565 34 1 3.2084 -3.1274 1.9273 35 1 4.1299 0.4363 -0.2335 36 1 4.2886 0.4996 1.5382 37 1 5.3824 -0.5296 0.5828 38 1 2.9813 -1.3948 -1.3248 39 1 2.6171 -2.8978 -0.4435 40 1 5.3952 -2.4186 -0.2745 41 1 2.7784 -3.1719 -2.6412 42 1 3.6447 -7.5974 -5.8018 43 1 5.4912 -5.3337 -5.2095 44 1 7.2793 -4.8362 -3.6222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157944679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:23 Heat of formation + Delta-G solvation = 13.584382 kcal Electronic energy + Delta-G solvation = -21900.029513 eV Core-core repulsion = 18851.126080 eV Total energy + Delta-G solvation = -3048.903433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55716 -39.68270 -37.03322 -35.85135 -34.31676 -32.52507 -29.92169 -29.16998 -28.04544 -27.70992 -27.46269 -26.49897 -23.23800 -23.02073 -22.47232 -19.80669 -19.41664 -17.75925 -17.05922 -16.67547 -16.38103 -16.24904 -15.79847 -15.74391 -15.38718 -14.91203 -14.80289 -14.33357 -14.19080 -14.07249 -13.97921 -13.41605 -13.29095 -13.24581 -13.05031 -12.91854 -12.71097 -12.64633 -12.50986 -12.20089 -11.96760 -11.78058 -11.61464 -11.52549 -11.35305 -11.15768 -10.57125 -9.83438 -9.82943 -9.15313 -8.66982 -8.16677 -6.51558 1.00331 1.20104 1.39852 1.53340 1.60185 2.22474 2.63525 2.84191 3.07041 3.79253 3.83287 3.92858 4.02293 4.25757 4.31213 4.38055 4.51925 4.54054 4.65437 4.73316 4.81163 4.81786 4.86651 4.91089 4.95883 4.97519 5.03351 5.06644 5.06945 5.12011 5.14384 5.24268 5.26216 5.29453 5.39699 5.56314 5.62701 5.96808 6.12789 6.17810 6.19610 6.45853 6.59221 6.90792 6.94001 7.11208 7.89273 8.35142 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.004550 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.568477 B = 6152.835780 C = 7229.832260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.567 5.567 3 C 0.021 3.979 4 C 0.072 3.928 5 C -0.059 4.059 6 C -0.138 4.138 7 C -0.140 4.140 8 C 0.166 3.834 9 N -0.727 5.727 10 C 0.398 3.602 11 C -0.345 4.345 12 C 0.137 3.863 13 C -0.502 4.502 14 H 0.076 0.924 15 C 0.042 3.958 16 N -0.824 5.824 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.266 1.266 20 H -0.258 1.258 21 C -0.264 4.264 22 C 0.119 3.881 23 N -0.629 5.629 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.395 0.605 41 H 0.099 0.901 42 H 0.290 0.710 43 H 0.099 0.901 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 11.750 11.440 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.291 5.291 3 C -0.127 4.127 4 C -0.057 4.057 5 C -0.060 4.060 6 C -0.196 4.196 7 C -0.198 4.198 8 C 0.041 3.959 9 N -0.363 5.363 10 C 0.165 3.835 11 C -0.372 4.372 12 C 0.129 3.871 13 C -0.533 4.533 14 H 0.094 0.906 15 C -0.174 4.174 16 N -0.450 5.450 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.182 1.182 21 C -0.289 4.289 22 C -0.032 4.032 23 N -0.354 5.354 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.231 0.769 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.220 11.505 11.550 16.840 hybrid contribution -1.024 -0.269 -0.505 1.174 sum -5.245 11.236 11.044 16.606 Atomic orbital electron populations 1.22440 0.86530 1.02239 1.00878 1.61835 1.08551 1.14791 1.43874 1.22711 1.00809 0.88092 1.01084 1.22237 0.94474 0.97694 0.91255 1.20694 0.96223 0.95571 0.93541 1.21824 1.00985 0.98696 0.98092 1.22049 0.97940 0.97350 1.02413 1.21073 0.82436 0.95558 0.96785 1.44306 1.11131 1.59165 1.21735 1.18255 0.89230 0.88998 0.86970 1.21317 0.97901 1.18544 0.99414 1.17977 0.92901 0.86491 0.89718 1.19751 1.07619 1.03812 1.22156 0.90586 1.26756 0.96940 0.94004 0.99728 1.69845 1.34985 1.03419 1.36702 0.85176 0.78558 0.78524 0.77243 1.18499 1.19082 1.18203 1.21540 0.93942 1.10597 1.02843 1.21748 0.98523 0.93619 0.89267 1.66926 1.22247 1.22542 1.23645 0.94562 0.91204 0.91926 0.91769 0.91711 0.93482 0.90993 0.92059 0.93024 0.90459 0.93147 0.92172 0.91054 0.93496 0.92777 0.95212 0.76896 0.88317 0.89981 0.88327 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.30 127.69 1.19 1.68 16 2 N -0.57 -12.06 3.83 -948.84 -3.63 -15.70 16 3 C 0.02 0.37 8.74 127.69 1.12 1.48 16 4 C 0.07 1.41 4.22 86.30 0.36 1.77 16 5 C -0.06 -1.36 0.61 -52.18 -0.03 -1.39 16 6 C -0.14 -2.90 8.21 71.98 0.59 -2.31 16 7 C -0.14 -2.96 7.11 71.98 0.51 -2.45 16 8 C 0.17 5.43 3.52 86.38 0.30 5.74 16 9 N -0.73 -27.86 5.21 -345.24 -1.80 -29.66 16 10 C 0.40 19.46 7.65 132.90 1.02 20.48 16 11 C -0.34 -18.40 9.12 23.01 0.21 -18.19 16 12 C 0.14 7.86 5.48 -21.12 -0.12 7.75 16 13 C -0.50 -28.18 9.08 23.52 0.21 -27.97 16 14 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 15 C 0.04 2.16 5.14 85.29 0.44 2.60 16 16 N -0.82 -44.30 11.54 21.84 0.25 -44.05 16 17 Si 0.98 38.89 29.59 68.60 2.03 40.92 16 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 C -0.26 -14.61 8.70 22.60 0.20 -14.41 16 22 C 0.12 6.00 11.10 84.26 0.94 6.93 16 23 N -0.63 -31.62 10.37 -194.47 -2.02 -33.64 16 24 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 1.22 7.97 -2.39 -0.02 1.20 16 26 H 0.06 1.21 8.05 -2.39 -0.02 1.19 16 27 H 0.06 1.28 5.84 -2.39 -0.01 1.27 16 28 H 0.06 1.02 7.59 -2.39 -0.02 1.00 16 29 H 0.05 0.70 7.33 -2.39 -0.02 0.68 16 30 H 0.07 1.42 7.77 -2.38 -0.02 1.40 16 31 H 0.06 0.97 7.37 -2.39 -0.02 0.96 16 32 H 0.05 1.18 6.99 -2.39 -0.02 1.17 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.39 5.31 -2.38 -0.01 1.38 16 36 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 37 H 0.05 1.06 7.11 -2.39 -0.02 1.04 16 38 H 0.05 1.97 7.21 -2.39 -0.02 1.95 16 39 H 0.03 1.08 7.93 -2.39 -0.02 1.06 16 40 H 0.40 13.81 6.43 -92.71 -0.60 13.22 16 41 H 0.10 5.12 6.71 -2.91 -0.02 5.10 16 42 H 0.29 13.99 8.29 -92.71 -0.77 13.22 16 43 H 0.10 5.55 6.87 -2.91 -0.02 5.53 16 44 H 0.15 6.32 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -64.44 343.07 2.16 -62.29 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: 0.39 Total: 38.13 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 6.94 Total: -18.29 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -7.20 Total: -123.05 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -64.44 2.16 -62.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157944679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.870 kcal (2) G-P(sol) polarization free energy of solvation -64.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds