Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46910 * 110.99834 * 2 1 4 4 C 1.46898 * 111.00542 * 123.95292 * 2 1 3 5 5 C 1.52994 * 109.47434 * 170.00147 * 4 2 1 6 6 C 1.53003 * 109.47486 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47013 * 59.99744 * 6 5 4 8 8 C 1.53004 * 109.46760 * 300.00081 * 6 5 4 9 9 N 1.46494 * 109.47519 * 180.02562 * 6 5 4 10 10 C 1.39081 * 120.00245 * 184.12048 * 9 6 5 11 11 C 1.38744 * 119.65790 * 174.87299 * 10 9 6 12 12 C 1.40782 * 118.66783 * 180.25198 * 11 10 9 13 13 C 1.41552 * 120.99402 * 179.72670 * 12 11 10 14 14 H 1.08004 * 119.99867 * 26.02516 * 13 12 11 15 15 C 1.40028 * 120.00012 * 206.02762 * 13 12 11 16 16 N 1.30743 * 120.00229 * 13.04523 * 15 13 12 17 17 Si 1.86799 * 119.99664 * 193.04459 * 15 13 12 18 18 H 1.48497 * 109.47241 * 84.98935 * 17 15 13 19 19 H 1.48507 * 109.46989 * 204.98976 * 17 15 13 20 20 H 1.48493 * 109.47272 * 324.98519 * 17 15 13 21 21 C 1.41190 * 118.01103 * 359.51132 * 12 11 10 22 22 C 1.36554 * 119.14760 * 0.47083 * 21 12 11 23 23 N 1.32092 * 121.26850 * 359.76870 * 22 21 12 24 24 H 1.09004 * 109.47016 * 296.04361 * 1 2 3 25 25 H 1.08999 * 109.47497 * 56.04859 * 1 2 3 26 26 H 1.08995 * 109.46716 * 176.04542 * 1 2 3 27 27 H 1.09001 * 109.46988 * 183.95662 * 3 2 1 28 28 H 1.08997 * 109.46802 * 303.95667 * 3 2 1 29 29 H 1.08997 * 109.46995 * 63.95345 * 3 2 1 30 30 H 1.09004 * 109.46619 * 49.99997 * 4 2 1 31 31 H 1.09004 * 109.47022 * 290.00382 * 4 2 1 32 32 H 1.09004 * 109.47340 * 60.00292 * 5 4 2 33 33 H 1.09004 * 109.47208 * 300.00122 * 5 4 2 34 34 H 1.09000 * 109.47137 * 183.93713 * 7 6 5 35 35 H 1.09000 * 109.47250 * 303.93298 * 7 6 5 36 36 H 1.08993 * 109.47110 * 63.93673 * 7 6 5 37 37 H 1.08997 * 109.47021 * 305.46203 * 8 6 5 38 38 H 1.08995 * 109.47099 * 65.45874 * 8 6 5 39 39 H 1.08999 * 109.46746 * 185.46281 * 8 6 5 40 40 H 0.97002 * 119.99944 * 4.11685 * 9 6 5 41 41 H 1.07990 * 120.66724 * 359.97345 * 11 10 9 42 42 H 0.96999 * 120.00179 * 180.02562 * 16 15 13 43 43 H 1.08007 * 120.42456 * 180.25945 * 21 12 11 44 44 H 1.08002 * 119.36600 * 179.79408 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 3.5045 -0.9552 0.9703 6 6 4.0529 -1.7535 2.1548 7 6 3.3700 -3.1216 2.2076 8 6 3.7750 -0.9943 3.4538 9 7 5.4978 -1.9342 1.9949 10 6 6.2074 -2.7061 2.9087 11 6 7.5540 -2.9610 2.6926 12 6 8.2508 -3.7492 3.6281 13 6 9.6241 -4.0446 3.4532 14 1 10.2520 -3.3758 2.8832 15 6 10.1684 -5.2040 4.0192 16 7 9.3794 -6.1367 4.4850 17 14 12.0219 -5.4181 4.1085 18 1 12.5391 -4.7501 5.3298 19 1 12.3512 -6.8653 4.1588 20 1 12.6490 -4.8093 2.9081 21 6 7.5400 -4.2324 4.7482 22 6 6.2149 -3.9289 4.8766 23 7 5.5904 -3.1903 3.9770 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3632 -1.0252 -0.0709 27 1 3.0828 1.3433 -0.0709 28 1 1.5897 1.9164 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.5091 -1.7406 1.1756 31 1 1.7976 -0.2247 2.0628 32 1 3.9910 0.0195 0.9323 33 1 3.7025 -1.4964 0.0450 34 1 3.7088 -3.6630 3.0909 35 1 2.2895 -2.9867 2.2565 36 1 3.6251 -3.6898 1.3131 37 1 4.1783 0.0154 3.3778 38 1 2.6993 -0.9441 3.6222 39 1 4.2494 -1.5135 4.2865 40 1 5.9596 -1.5156 1.2517 41 1 8.0565 -2.5664 1.8220 42 1 9.7565 -6.9396 4.8774 43 1 8.0373 -4.8372 5.4922 44 1 5.6670 -4.2995 5.7304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158760731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = 34.043754 kcal Electronic energy + Delta-G solvation = -21662.221592 eV Core-core repulsion = 18614.205344 eV Total energy + Delta-G solvation = -3048.016248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.08364 -37.95399 -36.29436 -33.95968 -32.03768 -30.57435 -28.84044 -27.79220 -27.52642 -26.71587 -25.74666 -24.65829 -21.84172 -21.47615 -20.58486 -18.74238 -17.46096 -16.27362 -15.61513 -15.58871 -15.14503 -14.73374 -14.46412 -14.10160 -14.04538 -13.49676 -13.28221 -13.17056 -12.67933 -12.56440 -12.42433 -12.27587 -12.06465 -11.87349 -11.56177 -11.35968 -11.30026 -11.08566 -11.02346 -10.88149 -10.77345 -10.50243 -10.29103 -10.22240 -9.70918 -9.38066 -8.90770 -8.48946 -7.87817 -7.75321 -6.77325 -6.37422 -4.52463 2.82949 3.05673 3.09028 3.10239 3.39074 3.76227 3.91181 4.20479 4.75926 4.92575 4.98115 5.12832 5.22563 5.28278 5.39918 5.46359 5.54751 5.65374 5.66024 5.71257 5.77603 5.83927 5.92371 6.07567 6.13301 6.20587 6.32979 6.39232 6.54472 6.75177 6.86722 6.89557 6.92813 7.01712 7.03321 7.12916 7.15857 7.35605 7.62675 7.78819 8.05136 8.38741 8.47020 8.69126 8.87664 8.95933 9.82938 10.17564 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.042807 B = 0.003289 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.936357 B = 8511.910574 C = 8823.804508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.021 3.979 4 C 0.057 3.943 5 C -0.117 4.117 6 C 0.199 3.801 7 C -0.161 4.161 8 C -0.160 4.160 9 N -0.738 5.738 10 C 0.404 3.596 11 C -0.335 4.335 12 C 0.158 3.842 13 C -0.459 4.459 14 H 0.078 0.922 15 C 0.078 3.922 16 N -0.790 5.790 17 Si 0.912 3.088 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.241 4.241 22 C 0.109 3.891 23 N -0.609 5.609 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.393 0.607 41 H 0.094 0.906 42 H 0.281 0.719 43 H 0.122 0.878 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 8.588 -4.859 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.127 4.127 4 C -0.071 4.071 5 C -0.155 4.155 6 C 0.111 3.889 7 C -0.219 4.219 8 C -0.219 4.219 9 N -0.374 5.374 10 C 0.173 3.827 11 C -0.362 4.362 12 C 0.150 3.850 13 C -0.490 4.490 14 H 0.096 0.904 15 C -0.141 4.141 16 N -0.415 5.415 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.266 4.266 22 C -0.040 4.040 23 N -0.333 5.333 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.227 0.773 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.289 8.270 -4.975 15.625 hybrid contribution 1.670 0.163 0.324 1.709 sum -10.618 8.433 -4.651 14.335 Atomic orbital electron populations 1.22366 0.87538 1.02220 1.00241 1.61984 1.07622 1.13872 1.43843 1.22435 1.01298 0.88838 1.00143 1.22252 0.95571 0.98342 0.90937 1.21804 0.94590 1.00293 0.98849 1.19775 0.81444 0.94361 0.93286 1.22299 0.98291 0.97451 1.03908 1.22304 1.00036 0.99359 1.00166 1.44367 1.05779 1.57200 1.30102 1.17911 0.87811 0.89167 0.87808 1.21106 0.93518 1.17366 1.04178 1.17571 0.92720 0.86411 0.88320 1.19574 0.94165 1.05930 1.29333 0.90414 1.25937 1.00494 0.95009 0.92674 1.69786 1.37190 1.05821 1.28740 0.86275 0.82253 0.77990 0.79879 1.19181 1.20284 1.18674 1.21778 0.95126 1.08553 1.01104 1.21418 0.92494 0.94527 0.95552 1.66825 1.39450 1.21202 1.05782 0.95798 0.91564 0.91357 0.90978 0.91709 0.95747 0.90223 0.94273 0.91950 0.91008 0.89036 0.93579 0.93710 0.94259 0.93605 0.89163 0.77267 0.88823 0.90835 0.86035 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 60.06 0.57 0.79 16 2 N -0.55 -5.93 5.02 -251.26 -1.26 -7.19 16 3 C 0.02 0.20 9.32 60.07 0.56 0.76 16 4 C 0.06 0.66 4.26 -3.83 -0.02 0.64 16 5 C -0.12 -1.51 4.31 -26.73 -0.12 -1.62 16 6 C 0.20 3.13 0.83 -131.82 -0.11 3.02 16 7 C -0.16 -2.65 8.04 37.16 0.30 -2.35 16 8 C -0.16 -2.54 8.01 37.16 0.30 -2.24 16 9 N -0.74 -13.57 5.23 -47.79 -0.25 -13.82 16 10 C 0.40 9.17 6.88 -154.98 -1.07 8.10 16 11 C -0.33 -8.31 9.74 -38.43 -0.37 -8.69 16 12 C 0.16 4.24 5.59 -106.55 -0.60 3.65 16 13 C -0.46 -12.18 9.12 -37.65 -0.34 -12.53 16 14 H 0.08 1.99 7.88 -52.48 -0.41 1.58 16 15 C 0.08 1.94 5.26 -17.34 -0.09 1.85 16 16 N -0.79 -20.31 10.86 55.55 0.60 -19.70 16 17 Si 0.91 18.57 29.58 -169.99 -5.03 13.55 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 C -0.24 -6.27 8.72 -39.07 -0.34 -6.61 16 22 C 0.11 2.60 11.10 -18.05 -0.20 2.40 16 23 N -0.61 -13.98 5.50 -12.82 -0.07 -14.05 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 26 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 27 H 0.07 0.70 6.47 -51.93 -0.34 0.36 16 28 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.93 6.26 -51.93 -0.33 0.60 16 31 H 0.04 0.46 6.54 -51.93 -0.34 0.12 16 32 H 0.06 0.78 6.55 -51.93 -0.34 0.44 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.77 5.96 -51.93 -0.31 1.47 16 35 H 0.05 0.64 6.23 -51.93 -0.32 0.32 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.63 6.73 -51.93 -0.35 0.28 16 39 H 0.09 1.71 5.99 -51.93 -0.31 1.40 16 40 H 0.39 6.55 8.47 -40.82 -0.35 6.20 16 41 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 42 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 43 H 0.12 3.24 6.23 -52.48 -0.33 2.91 16 44 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -27.76 341.06 -9.47 -37.23 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.08 Total: 11.69 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.52 Total: -12.84 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.98 Total: -54.76 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.76 -9.47 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158760731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.271 kcal (2) G-P(sol) polarization free energy of solvation -27.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds