Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46910 * 110.99834 * 2 1 4 4 C 1.46898 * 111.00542 * 123.95292 * 2 1 3 5 5 C 1.52994 * 109.47434 * 170.00147 * 4 2 1 6 6 C 1.53003 * 109.47486 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47013 * 59.99744 * 6 5 4 8 8 C 1.53004 * 109.46760 * 300.00081 * 6 5 4 9 9 N 1.46494 * 109.47519 * 180.02562 * 6 5 4 10 10 C 1.39081 * 120.00245 * 184.12048 * 9 6 5 11 11 C 1.38744 * 119.65790 * 174.87299 * 10 9 6 12 12 C 1.40782 * 118.66783 * 180.25198 * 11 10 9 13 13 C 1.41552 * 120.99402 * 179.72670 * 12 11 10 14 14 H 1.08004 * 119.99867 * 26.02516 * 13 12 11 15 15 C 1.40028 * 120.00012 * 206.02762 * 13 12 11 16 16 N 1.30743 * 120.00229 * 13.04523 * 15 13 12 17 17 Si 1.86799 * 119.99664 * 193.04459 * 15 13 12 18 18 H 1.48497 * 109.47241 * 84.98935 * 17 15 13 19 19 H 1.48507 * 109.46989 * 204.98976 * 17 15 13 20 20 H 1.48493 * 109.47272 * 324.98519 * 17 15 13 21 21 C 1.41190 * 118.01103 * 359.51132 * 12 11 10 22 22 C 1.36554 * 119.14760 * 0.47083 * 21 12 11 23 23 N 1.32092 * 121.26850 * 359.76870 * 22 21 12 24 24 H 1.09004 * 109.47016 * 296.04361 * 1 2 3 25 25 H 1.08999 * 109.47497 * 56.04859 * 1 2 3 26 26 H 1.08995 * 109.46716 * 176.04542 * 1 2 3 27 27 H 1.09001 * 109.46988 * 183.95662 * 3 2 1 28 28 H 1.08997 * 109.46802 * 303.95667 * 3 2 1 29 29 H 1.08997 * 109.46995 * 63.95345 * 3 2 1 30 30 H 1.09004 * 109.46619 * 49.99997 * 4 2 1 31 31 H 1.09004 * 109.47022 * 290.00382 * 4 2 1 32 32 H 1.09004 * 109.47340 * 60.00292 * 5 4 2 33 33 H 1.09004 * 109.47208 * 300.00122 * 5 4 2 34 34 H 1.09000 * 109.47137 * 183.93713 * 7 6 5 35 35 H 1.09000 * 109.47250 * 303.93298 * 7 6 5 36 36 H 1.08993 * 109.47110 * 63.93673 * 7 6 5 37 37 H 1.08997 * 109.47021 * 305.46203 * 8 6 5 38 38 H 1.08995 * 109.47099 * 65.45874 * 8 6 5 39 39 H 1.08999 * 109.46746 * 185.46281 * 8 6 5 40 40 H 0.97002 * 119.99944 * 4.11685 * 9 6 5 41 41 H 1.07990 * 120.66724 * 359.97345 * 11 10 9 42 42 H 0.96999 * 120.00179 * 180.02562 * 16 15 13 43 43 H 1.08007 * 120.42456 * 180.25945 * 21 12 11 44 44 H 1.08002 * 119.36600 * 179.79408 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 3.5045 -0.9552 0.9703 6 6 4.0529 -1.7535 2.1548 7 6 3.3700 -3.1216 2.2076 8 6 3.7750 -0.9943 3.4538 9 7 5.4978 -1.9342 1.9949 10 6 6.2074 -2.7061 2.9087 11 6 7.5540 -2.9610 2.6926 12 6 8.2508 -3.7492 3.6281 13 6 9.6241 -4.0446 3.4532 14 1 10.2520 -3.3758 2.8832 15 6 10.1684 -5.2040 4.0192 16 7 9.3794 -6.1367 4.4850 17 14 12.0219 -5.4181 4.1085 18 1 12.5391 -4.7501 5.3298 19 1 12.3512 -6.8653 4.1588 20 1 12.6490 -4.8093 2.9081 21 6 7.5400 -4.2324 4.7482 22 6 6.2149 -3.9289 4.8766 23 7 5.5904 -3.1903 3.9770 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3632 -1.0252 -0.0709 27 1 3.0828 1.3433 -0.0709 28 1 1.5897 1.9164 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.5091 -1.7406 1.1756 31 1 1.7976 -0.2247 2.0628 32 1 3.9910 0.0195 0.9323 33 1 3.7025 -1.4964 0.0450 34 1 3.7088 -3.6630 3.0909 35 1 2.2895 -2.9867 2.2565 36 1 3.6251 -3.6898 1.3131 37 1 4.1783 0.0154 3.3778 38 1 2.6993 -0.9441 3.6222 39 1 4.2494 -1.5135 4.2865 40 1 5.9596 -1.5156 1.2517 41 1 8.0565 -2.5664 1.8220 42 1 9.7565 -6.9396 4.8774 43 1 8.0373 -4.8372 5.4922 44 1 5.6670 -4.2995 5.7304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158760731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = 18.326776 kcal Electronic energy + Delta-G solvation = -21662.903132 eV Core-core repulsion = 18614.205344 eV Total energy + Delta-G solvation = -3048.697787 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64725 -39.25039 -37.52327 -35.79772 -33.57093 -32.48021 -30.00141 -29.31575 -28.45436 -28.01432 -27.66145 -25.67120 -23.36431 -23.14372 -21.97602 -20.10017 -19.27911 -17.59285 -17.37850 -16.65548 -16.44255 -16.06100 -15.89807 -15.54001 -15.23901 -15.02153 -14.73869 -14.63695 -14.25196 -14.05533 -13.73398 -13.32150 -13.17105 -13.02176 -12.87905 -12.78081 -12.60761 -12.58348 -12.35958 -12.20994 -12.08659 -11.94987 -11.79254 -11.56168 -11.43010 -11.20355 -10.58069 -9.83047 -9.61668 -9.27054 -8.64429 -8.13799 -6.52281 1.01052 1.24007 1.39015 1.51943 1.62587 2.20342 2.59172 2.85555 3.08444 3.85354 3.96433 4.05736 4.10502 4.24371 4.30767 4.41145 4.45330 4.52733 4.63881 4.71658 4.77139 4.80838 4.89901 4.95213 5.01392 5.02712 5.03744 5.07477 5.09858 5.14416 5.18103 5.21998 5.33560 5.42663 5.61958 5.66517 5.76982 5.92984 6.08897 6.12751 6.14097 6.51966 6.77803 6.85560 6.91055 7.09979 7.97511 8.32096 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.042807 B = 0.003289 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.936357 B = 8511.910574 C = 8823.804508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.020 3.980 4 C 0.062 3.938 5 C -0.104 4.104 6 C 0.196 3.804 7 C -0.157 4.157 8 C -0.154 4.154 9 N -0.728 5.728 10 C 0.408 3.592 11 C -0.359 4.359 12 C 0.130 3.870 13 C -0.494 4.494 14 H 0.076 0.924 15 C 0.037 3.963 16 N -0.819 5.819 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.268 4.268 22 C 0.112 3.888 23 N -0.601 5.601 24 H 0.028 0.972 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.402 0.598 41 H 0.097 0.903 42 H 0.289 0.711 43 H 0.108 0.892 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.319 9.485 -5.528 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.287 5.287 3 C -0.128 4.128 4 C -0.066 4.066 5 C -0.142 4.142 6 C 0.109 3.891 7 C -0.215 4.215 8 C -0.212 4.212 9 N -0.364 5.364 10 C 0.175 3.825 11 C -0.385 4.385 12 C 0.122 3.878 13 C -0.525 4.525 14 H 0.094 0.906 15 C -0.179 4.179 16 N -0.445 5.445 17 Si 0.808 3.192 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.183 1.183 21 C -0.292 4.292 22 C -0.038 4.038 23 N -0.324 5.324 24 H 0.046 0.954 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.237 0.763 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.258 9.197 -5.675 17.104 hybrid contribution 1.807 -0.069 0.488 1.873 sum -11.451 9.128 -5.187 15.536 Atomic orbital electron populations 1.22420 0.86288 1.02730 1.00997 1.61973 1.08855 1.14500 1.43322 1.22471 1.01098 0.88378 1.00861 1.22145 0.94265 0.98665 0.91495 1.21657 0.95725 0.99894 0.96964 1.19985 0.79618 0.94646 0.94841 1.22229 1.00139 0.97204 1.01912 1.22207 1.01320 0.98987 0.98714 1.44495 1.07030 1.55752 1.29151 1.18102 0.87578 0.88725 0.88114 1.21255 0.94683 1.18213 1.04394 1.17955 0.93516 0.87238 0.89109 1.19840 0.94579 1.07098 1.30985 0.90626 1.26820 1.05477 0.94018 0.91620 1.69841 1.39416 1.06348 1.28860 0.85140 0.75708 0.78407 0.79971 1.18503 1.19071 1.18304 1.21731 0.96176 1.10052 1.01280 1.21814 0.91987 0.93752 0.96266 1.67046 1.38837 1.20895 1.05663 0.95386 0.90389 0.91104 0.91396 0.90450 0.95510 0.90221 0.94075 0.91226 0.91389 0.91989 0.90784 0.94601 0.93806 0.91283 0.92219 0.76273 0.88476 0.89984 0.87413 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.57 127.69 1.22 1.57 16 2 N -0.56 -10.62 5.02 -948.84 -4.76 -15.38 16 3 C 0.02 0.33 9.32 127.69 1.19 1.52 16 4 C 0.06 1.27 4.26 86.30 0.37 1.64 16 5 C -0.10 -2.44 4.31 30.59 0.13 -2.31 16 6 C 0.20 5.84 0.83 3.61 0.00 5.84 16 7 C -0.16 -4.94 8.04 71.98 0.58 -4.36 16 8 C -0.15 -4.60 8.01 71.98 0.58 -4.03 16 9 N -0.73 -26.26 5.23 -305.10 -1.59 -27.85 16 10 C 0.41 18.63 6.88 132.90 0.91 19.54 16 11 C -0.36 -18.27 9.74 23.01 0.22 -18.05 16 12 C 0.13 7.22 5.59 -21.12 -0.12 7.11 16 13 C -0.49 -27.09 9.12 23.52 0.21 -26.88 16 14 H 0.08 4.01 7.88 -2.91 -0.02 3.98 16 15 C 0.04 1.86 5.26 85.29 0.45 2.31 16 16 N -0.82 -42.97 10.86 21.84 0.24 -42.74 16 17 Si 0.99 38.20 29.58 68.60 2.03 40.23 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 21 C -0.27 -14.39 8.72 22.60 0.20 -14.19 16 22 C 0.11 5.39 11.10 84.26 0.94 6.33 16 23 N -0.60 -27.71 5.50 -194.47 -1.07 -28.78 16 24 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 26 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 27 H 0.07 1.15 6.47 -2.39 -0.02 1.14 16 28 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 29 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 1.62 6.26 -2.39 -0.01 1.61 16 31 H 0.04 0.83 6.54 -2.38 -0.02 0.81 16 32 H 0.07 1.56 6.55 -2.39 -0.02 1.54 16 33 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 2.36 5.96 -2.39 -0.01 2.34 16 35 H 0.07 1.89 6.23 -2.39 -0.01 1.88 16 36 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.73 6.73 -2.39 -0.02 1.71 16 39 H 0.06 2.19 5.99 -2.39 -0.01 2.18 16 40 H 0.40 13.02 8.47 -92.71 -0.79 12.23 16 41 H 0.10 4.71 8.06 -2.92 -0.02 4.69 16 42 H 0.29 13.66 8.29 -92.71 -0.77 12.89 16 43 H 0.11 5.99 6.23 -2.91 -0.02 5.97 16 44 H 0.14 5.92 8.06 -2.91 -0.02 5.90 16 Total: -1.00 -60.86 341.06 1.93 -58.93 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: 0.20 Total: 39.54 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 6.89 Total: -23.95 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -7.19 Total: -114.75 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -60.86 1.93 -58.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158760731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.255 kcal (2) G-P(sol) polarization free energy of solvation -60.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds