Wall clock time and date at job start Mon Mar 30 2020 01:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47411 * 2 1 4 4 N 1.46499 * 109.47110 * 120.00162 * 2 1 3 5 5 C 1.39088 * 119.99751 * 294.46802 * 4 2 1 6 6 C 1.38740 * 119.65926 * 6.14132 * 5 4 2 7 7 C 1.40772 * 118.67334 * 179.70568 * 6 5 4 8 8 C 1.41547 * 120.99345 * 180.25392 * 7 6 5 9 9 H 1.08002 * 120.00480 * 329.30169 * 8 7 6 10 10 C 1.40029 * 119.99849 * 149.30035 * 8 7 6 11 11 N 1.30744 * 119.99909 * 166.85098 * 10 8 7 12 12 Si 1.86796 * 119.99914 * 346.85494 * 10 8 7 13 13 H 1.48502 * 109.47681 * 87.66375 * 12 10 8 14 14 H 1.48499 * 109.46920 * 207.66284 * 12 10 8 15 15 H 1.48498 * 109.46981 * 327.66015 * 12 10 8 16 16 C 1.41189 * 118.00938 * 0.27366 * 7 6 5 17 17 C 1.36556 * 119.14983 * 0.02562 * 16 7 6 18 18 N 1.32099 * 121.26483 * 359.97438 * 17 16 7 19 19 C 1.46496 * 120.00367 * 114.46271 * 4 2 1 20 20 C 1.53004 * 109.47395 * 357.51156 * 19 4 2 21 21 C 1.53001 * 109.47310 * 117.51689 * 19 4 2 22 22 C 1.53005 * 109.47308 * 237.51329 * 19 4 2 23 23 N 1.46902 * 109.46914 * 53.86893 * 22 19 4 24 24 H 1.08999 * 109.47057 * 301.00851 * 1 2 3 25 25 H 1.09008 * 109.46743 * 61.00605 * 1 2 3 26 26 H 1.08996 * 109.47631 * 181.00597 * 1 2 3 27 27 H 1.09004 * 109.47218 * 239.99684 * 2 1 3 28 28 H 1.09002 * 109.46755 * 189.05133 * 3 2 1 29 29 H 1.08997 * 109.47081 * 309.04740 * 3 2 1 30 30 H 1.08993 * 109.47177 * 69.05293 * 3 2 1 31 31 H 1.08011 * 120.66274 * 359.97438 * 6 5 4 32 32 H 0.97003 * 120.00056 * 180.02562 * 11 10 8 33 33 H 1.08002 * 120.42688 * 179.97438 * 16 7 6 34 34 H 1.07997 * 119.36598 * 179.97438 * 17 16 7 35 35 H 1.09005 * 109.46590 * 59.99607 * 20 19 4 36 36 H 1.08997 * 109.47438 * 179.97438 * 20 19 4 37 37 H 1.09001 * 109.46740 * 300.00714 * 20 19 4 38 38 H 1.08997 * 109.47113 * 59.99880 * 21 19 4 39 39 H 1.08999 * 109.47142 * 180.02562 * 21 19 4 40 40 H 1.09000 * 109.46943 * 300.00114 * 21 19 4 41 41 H 1.09001 * 109.47315 * 173.86283 * 22 19 4 42 42 H 1.08994 * 109.47194 * 293.86872 * 22 19 4 43 43 H 1.00904 * 111.00133 * 63.82661 * 23 22 19 44 44 H 1.00902 * 111.00233 * 187.77491 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7797 -0.1521 2.4562 6 6 0.9712 0.9683 2.5821 7 6 0.7385 1.4923 3.8677 8 6 -0.0825 2.6303 4.0534 9 1 -0.1392 3.3866 3.2845 10 6 -0.8213 2.7754 5.2340 11 7 -1.3713 3.9256 5.5238 12 14 -1.0210 1.3257 6.3950 13 1 0.1182 1.2932 7.3470 14 1 -2.2924 1.4672 7.1492 15 1 -1.0479 0.0644 5.6117 16 6 1.3490 0.8491 4.9664 17 6 2.1346 -0.2455 4.7438 18 7 2.3318 -0.7111 3.5234 19 6 2.7578 -1.9485 1.0652 20 6 2.8269 -2.3484 -0.4100 21 6 4.1754 -1.7659 1.6111 22 6 2.0434 -3.0450 1.8579 23 7 0.6390 -3.1199 1.4336 24 1 -0.3633 0.5294 0.8808 25 1 -0.3633 0.4982 -0.8990 26 1 -0.3634 -1.0274 0.0180 27 1 1.8933 -0.5139 -0.8900 28 1 3.1180 1.4466 -0.1617 29 1 1.5508 2.0008 -0.7981 30 1 1.8148 1.9075 0.9597 31 1 0.5256 1.4267 1.7115 32 1 -1.8828 4.0263 6.3418 33 1 1.1973 1.2185 5.9699 34 1 2.6036 -0.7400 5.5816 35 1 3.3358 -1.5671 -0.9747 36 1 3.3775 -3.2840 -0.5075 37 1 1.8169 -2.4784 -0.7989 38 1 4.1261 -1.4811 2.6621 39 1 4.7257 -2.7017 1.5133 40 1 4.6843 -0.9847 1.0465 41 1 2.5302 -4.0026 1.6732 42 1 2.0897 -2.8130 2.9218 43 1 0.5678 -3.3950 0.4654 44 1 0.1150 -3.7458 2.0267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163188030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:52 Heat of formation + Delta-G solvation = 40.711943 kcal Electronic energy + Delta-G solvation = -23407.056554 eV Core-core repulsion = 20359.329460 eV Total energy + Delta-G solvation = -3047.727094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18860 -38.96591 -36.37393 -35.75237 -33.49666 -32.81937 -31.90171 -29.34065 -28.22856 -27.86664 -27.60580 -25.50889 -23.54194 -23.11542 -21.84166 -20.29012 -18.70203 -17.67335 -17.37975 -16.91032 -16.58556 -16.24383 -15.68294 -15.30442 -15.10583 -14.88633 -14.83813 -14.40493 -14.14965 -13.75910 -13.73425 -13.44823 -13.30234 -13.06301 -12.96265 -12.70361 -12.55817 -12.51805 -12.42226 -12.19713 -12.16977 -11.83538 -11.68231 -11.52904 -11.23322 -10.75457 -10.29888 -9.88043 -9.63520 -9.31448 -8.87186 -7.95703 -6.59241 0.88674 1.08917 1.29053 1.44049 1.52260 2.14973 2.34255 2.78990 3.71812 3.78490 3.88664 4.09376 4.17539 4.25019 4.41255 4.45034 4.50082 4.60041 4.69038 4.76745 4.81653 4.85431 4.87012 4.95466 4.99377 5.02297 5.09429 5.11946 5.15172 5.19959 5.20332 5.37175 5.48721 5.51084 5.51933 5.64982 5.74054 5.87267 6.06826 6.33937 6.41180 6.58166 6.73943 6.77442 6.84747 7.11084 7.87223 8.21218 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022157 B = 0.006529 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.385161 B = 4287.843459 C = 4734.750400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.154 3.846 3 C -0.185 4.185 4 N -0.581 5.581 5 C 0.435 3.565 6 C -0.341 4.341 7 C 0.120 3.880 8 C -0.479 4.479 9 H 0.054 0.946 10 C 0.051 3.949 11 N -0.852 5.852 12 Si 0.979 3.021 13 H -0.256 1.256 14 H -0.282 1.282 15 H -0.265 1.265 16 C -0.345 4.345 17 C 0.145 3.855 18 N -0.597 5.597 19 C 0.188 3.812 20 C -0.150 4.150 21 C -0.158 4.158 22 C 0.059 3.941 23 N -0.845 5.845 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.293 0.707 33 H 0.101 0.899 34 H 0.152 0.848 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.340 0.660 44 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.282 -13.954 -10.214 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.051 3.949 3 C -0.243 4.243 4 N -0.295 5.295 5 C 0.204 3.796 6 C -0.366 4.366 7 C 0.112 3.888 8 C -0.511 4.511 9 H 0.073 0.927 10 C -0.164 4.164 11 N -0.479 5.479 12 Si 0.804 3.196 13 H -0.181 1.181 14 H -0.209 1.209 15 H -0.189 1.189 16 C -0.370 4.370 17 C -0.009 4.009 18 N -0.320 5.320 19 C 0.103 3.897 20 C -0.208 4.208 21 C -0.217 4.217 22 C -0.073 4.073 23 N -0.376 5.376 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.169 0.831 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.154 0.846 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.671 -13.767 -10.227 18.402 hybrid contribution -0.761 0.099 0.851 1.146 sum 5.910 -13.667 -9.376 17.597 Atomic orbital electron populations 1.22412 0.96179 1.02717 1.01675 1.21015 0.93718 0.92190 0.88027 1.22528 1.01016 0.97645 1.03081 1.46343 1.59120 1.23149 1.00854 1.17982 0.87713 0.87911 0.86007 1.21853 1.13194 1.03918 0.97671 1.17921 0.88617 0.89922 0.92364 1.19408 1.24522 1.04770 1.02379 0.92743 1.26756 0.92674 0.98651 0.98275 1.69657 1.27493 1.25548 1.25225 0.85364 0.77042 0.79135 0.78089 1.18122 1.20920 1.18943 1.21660 1.11125 1.05481 0.98723 1.21818 0.93190 0.91862 0.94009 1.67086 1.31063 1.35800 0.98015 1.20276 0.90423 0.83216 0.95781 1.22136 1.02789 1.02378 0.93449 1.22214 0.95378 1.01183 1.02961 1.22116 0.88433 0.95876 1.00918 1.58457 1.11759 1.59866 1.07489 0.93754 0.91226 0.91542 0.86766 0.92843 0.90638 0.92745 0.85510 0.89659 0.88096 0.83063 0.91512 0.90039 0.91239 0.91601 0.91165 0.93891 0.94527 0.91252 0.84646 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 9.07 71.98 0.65 -4.47 16 2 C 0.15 4.35 2.81 44.99 0.13 4.48 16 3 C -0.18 -5.62 8.90 71.98 0.64 -4.98 16 4 N -0.58 -18.73 2.14 -633.44 -1.36 -20.08 16 5 C 0.43 18.17 6.38 132.90 0.85 19.02 16 6 C -0.34 -16.31 6.49 23.01 0.15 -16.16 16 7 C 0.12 6.39 5.15 -21.12 -0.11 6.28 16 8 C -0.48 -27.88 9.66 23.52 0.23 -27.66 16 9 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 10 C 0.05 2.83 5.47 85.29 0.47 3.30 16 11 N -0.85 -48.00 13.92 21.84 0.30 -47.70 16 12 Si 0.98 45.42 24.49 68.60 1.68 47.10 16 13 H -0.26 -11.17 6.40 99.48 0.64 -10.53 16 14 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 15 H -0.26 -12.86 6.95 99.48 0.69 -12.17 16 16 C -0.35 -17.01 7.24 22.60 0.16 -16.85 16 17 C 0.14 6.29 11.10 84.26 0.94 7.22 16 18 N -0.60 -24.98 5.56 -194.47 -1.08 -26.06 16 19 C 0.19 4.92 0.81 3.61 0.00 4.92 16 20 C -0.15 -2.75 6.87 71.98 0.49 -2.25 16 21 C -0.16 -4.27 8.45 71.98 0.61 -3.66 16 22 C 0.06 1.55 5.38 86.30 0.46 2.01 16 23 N -0.85 -21.07 9.11 -186.71 -1.70 -22.78 16 24 H 0.04 1.69 4.85 -2.39 -0.01 1.67 16 25 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.07 1.91 8.01 -2.39 -0.02 1.89 16 27 H 0.11 2.52 4.98 -2.38 -0.01 2.51 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 30 H 0.05 2.11 4.50 -2.39 -0.01 2.09 16 31 H 0.13 5.93 3.48 -2.90 -0.01 5.92 16 32 H 0.29 14.86 8.29 -92.71 -0.77 14.09 16 33 H 0.10 4.95 4.36 -2.91 -0.01 4.94 16 34 H 0.15 5.48 8.06 -2.91 -0.02 5.46 16 35 H 0.07 1.17 7.12 -2.38 -0.02 1.15 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.19 6.35 -2.39 -0.02 1.17 16 38 H 0.07 2.18 5.92 -2.39 -0.01 2.17 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 2.32 6.21 -2.39 -0.01 2.31 16 43 H 0.34 6.79 7.59 -89.69 -0.68 6.11 16 44 H 0.34 7.92 9.08 -89.69 -0.81 7.11 16 Total: -1.00 -63.78 323.29 2.97 -60.81 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.55 Total: 37.49 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 5.67 Total: -28.79 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -3.84 Total: -116.61 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.68 Total: 47.10 kcal Total: -63.78 2.97 -60.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163188030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.522 kcal (2) G-P(sol) polarization free energy of solvation -63.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds