Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47611 * 2 1 4 4 C 1.52997 * 109.46901 * 120.00192 * 2 1 3 5 5 N 1.46505 * 109.47312 * 174.99822 * 4 2 1 6 6 C 1.46496 * 120.00174 * 269.99915 * 5 4 2 7 7 C 1.52996 * 109.47268 * 270.00077 * 6 5 4 8 8 C 1.53004 * 109.47471 * 64.99658 * 7 6 5 9 9 C 1.53002 * 109.47386 * 184.99887 * 7 6 5 10 10 C 1.38832 * 119.99913 * 89.99794 * 5 4 2 11 11 C 1.39963 * 119.96669 * 4.97975 * 10 5 4 12 12 N 1.32132 * 120.31127 * 180.02562 * 11 10 5 13 13 C 1.31932 * 120.27442 * 359.65946 * 12 11 10 14 14 C 1.40684 * 119.93200 * 0.61697 * 13 12 11 15 15 C 1.41270 * 120.15717 * 179.68175 * 14 13 12 16 16 H 1.07991 * 120.00228 * 204.97735 * 15 14 13 17 17 C 1.40060 * 119.99687 * 24.97732 * 15 14 13 18 18 N 1.30729 * 120.00151 * 17.51719 * 17 15 14 19 19 Si 1.86800 * 119.99670 * 197.51404 * 17 15 14 20 20 H 1.48497 * 109.47111 * 265.18641 * 19 17 15 21 21 H 1.48500 * 109.47398 * 25.18742 * 19 17 15 22 22 H 1.48496 * 109.47004 * 145.18532 * 19 17 15 23 23 N 1.32231 * 119.96941 * 185.00242 * 10 5 4 24 24 H 1.08994 * 109.46876 * 300.00537 * 1 2 3 25 25 H 1.09002 * 109.46880 * 60.00118 * 1 2 3 26 26 H 1.08997 * 109.47430 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47216 * 240.00031 * 2 1 3 28 28 H 1.09002 * 109.46903 * 299.99868 * 3 2 1 29 29 H 1.09001 * 109.46805 * 59.99779 * 3 2 1 30 30 H 1.09002 * 109.47703 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47635 * 54.99767 * 4 2 1 32 32 H 1.09000 * 109.47151 * 294.99657 * 4 2 1 33 33 H 1.09005 * 109.46779 * 29.99869 * 6 5 4 34 34 H 1.09004 * 109.47205 * 149.99584 * 6 5 4 35 35 H 1.08999 * 109.47363 * 304.99914 * 7 6 5 36 36 H 1.09007 * 109.46532 * 60.00121 * 8 7 6 37 37 H 1.08992 * 109.46985 * 180.02562 * 8 7 6 38 38 H 1.08997 * 109.47067 * 300.00301 * 8 7 6 39 39 H 1.09000 * 109.46931 * 59.99494 * 9 7 6 40 40 H 1.09001 * 109.47224 * 179.97438 * 9 7 6 41 41 H 1.08995 * 109.47094 * 299.99860 * 9 7 6 42 42 H 1.07994 * 119.84654 * 0.02562 * 11 10 5 43 43 H 1.07995 * 120.03193 * 180.30391 * 13 12 11 44 44 H 0.97001 * 119.99840 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1258 -1.9920 0.5613 7 6 4.3452 -3.0825 1.6118 8 6 2.9910 -3.5773 2.1240 9 6 5.1102 -4.2492 0.9838 10 6 4.2907 0.1784 1.7314 11 6 3.6960 1.2394 2.4239 12 7 4.4419 2.1997 2.9410 13 6 5.7546 2.1632 2.8147 14 6 6.3634 1.1049 2.1158 15 6 7.7682 1.0646 1.9719 16 1 8.2112 0.5311 1.1440 17 6 8.5865 1.7165 2.9032 18 7 8.1040 2.0628 4.0678 19 14 10.3672 2.0909 2.4810 20 1 11.2378 1.0060 3.0008 21 1 10.5177 2.1827 1.0065 22 1 10.7618 3.3817 3.1001 23 7 5.6047 0.1324 1.5915 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1369 33 1 3.4756 -2.3723 -0.2267 34 1 5.0851 -1.7022 0.1325 35 1 4.9214 -2.6757 2.4429 36 1 2.4149 -3.9841 1.2928 37 1 3.1475 -4.3538 2.8727 38 1 2.4461 -2.7461 2.5714 39 1 6.0749 -3.8967 0.6189 40 1 5.2670 -5.0259 1.7323 41 1 4.5341 -4.6561 0.1528 42 1 2.6224 1.2734 2.5362 43 1 6.3609 2.9476 3.2431 44 1 8.6708 2.5140 4.7128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163579390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 21.183469 kcal Electronic energy + Delta-G solvation = -22543.517225 eV Core-core repulsion = 19494.943313 eV Total energy + Delta-G solvation = -3048.573912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.41178 -37.48224 -35.49734 -34.06110 -33.12063 -31.76491 -29.12862 -27.34815 -27.08089 -26.53677 -25.76102 -24.23820 -21.89488 -21.15591 -19.92070 -19.47541 -17.55624 -16.26038 -15.97214 -15.15809 -14.87854 -14.79528 -14.52079 -14.35423 -13.88373 -13.41374 -13.13725 -12.83646 -12.67896 -12.28301 -12.09332 -12.01455 -11.74396 -11.63322 -11.45579 -11.29975 -11.14936 -11.07708 -10.94123 -10.85409 -10.64377 -10.43330 -10.41700 -10.27073 -10.19467 -9.66734 -9.57520 -9.35562 -8.39248 -7.21608 -6.95313 -6.52978 -4.60592 2.65501 3.03106 3.06297 3.11076 3.21435 3.72184 3.85939 4.57767 5.03066 5.09318 5.20945 5.27081 5.28129 5.39833 5.58031 5.70068 5.76986 5.80054 5.82150 5.84706 5.97548 5.97875 6.01885 6.07511 6.11695 6.17897 6.19821 6.29003 6.32478 6.33708 6.41986 6.46712 6.59896 6.63375 6.75521 6.76737 6.97358 7.05749 7.22668 7.73447 7.88089 8.15154 8.30624 8.54134 8.78778 9.42299 9.88387 10.03790 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.005669 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.311771 B = 4938.020798 C = 5990.311927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.134 3.866 5 N -0.611 5.611 6 C 0.143 3.857 7 C -0.114 4.114 8 C -0.144 4.144 9 C -0.140 4.140 10 C 0.376 3.624 11 C -0.151 4.151 12 N -0.420 5.420 13 C -0.043 4.043 14 C 0.264 3.736 15 C -0.426 4.426 16 H 0.087 0.913 17 C 0.078 3.922 18 N -0.781 5.781 19 Si 0.920 3.080 20 H -0.269 1.269 21 H -0.258 1.258 22 H -0.273 1.273 23 N -0.578 5.578 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.124 0.876 43 H 0.153 0.847 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -6.636 -5.262 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.199 4.199 4 C 0.009 3.991 5 N -0.327 5.327 6 C 0.018 3.982 7 C -0.134 4.134 8 C -0.202 4.202 9 C -0.198 4.198 10 C 0.137 3.863 11 C -0.311 4.311 12 N -0.132 5.132 13 C -0.213 4.213 14 C 0.135 3.865 15 C -0.460 4.460 16 H 0.105 0.895 17 C -0.144 4.144 18 N -0.406 5.406 19 Si 0.744 3.256 20 H -0.194 1.194 21 H -0.182 1.182 22 H -0.198 1.198 23 N -0.305 5.305 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.170 0.830 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.120 -6.608 -5.080 11.636 hybrid contribution 0.765 0.088 0.019 0.771 sum -7.354 -6.520 -5.061 11.055 Atomic orbital electron populations 1.21780 0.95396 1.01217 1.01737 1.21608 0.94951 0.97579 0.99311 1.21894 1.02282 0.94964 1.00757 1.21485 0.80232 0.99908 0.97449 1.46037 1.03114 1.20013 1.63533 1.21199 0.98812 0.84874 0.93274 1.21533 0.96289 0.95717 0.99821 1.21908 0.97409 1.00578 1.00261 1.21733 1.00304 0.97669 1.00135 1.19167 0.89823 0.87367 0.89942 1.22110 0.98595 0.97737 1.12618 1.67734 1.07448 1.24128 1.13847 1.23437 0.89389 1.01285 1.07184 1.19062 0.93754 0.86480 0.87162 1.19293 0.89413 1.27968 1.09369 0.89492 1.25993 1.01910 0.92841 0.93609 1.69776 1.38675 1.27963 1.04224 0.86101 0.80552 0.78652 0.80319 1.19372 1.18156 1.19782 1.68433 1.02527 1.28519 1.31028 0.92627 0.92875 0.93023 0.91604 0.93994 0.92482 0.91838 0.91121 0.90896 0.92774 0.89821 0.90678 0.93401 0.93517 0.92365 0.92403 0.93172 0.93281 0.85868 0.83000 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.11 -1.53 3.13 -90.62 -0.28 -1.81 16 3 C -0.14 -2.22 7.71 37.16 0.29 -1.93 16 4 C 0.13 1.95 4.01 -4.04 -0.02 1.93 16 5 N -0.61 -11.03 2.28 -173.67 -0.40 -11.43 16 6 C 0.14 2.35 4.96 -4.05 -0.02 2.33 16 7 C -0.11 -1.75 3.13 -90.62 -0.28 -2.03 16 8 C -0.14 -1.89 8.18 37.16 0.30 -1.59 16 9 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 10 C 0.38 8.60 6.03 -155.02 -0.93 7.67 16 11 C -0.15 -3.54 8.50 -16.78 -0.14 -3.68 16 12 N -0.42 -11.00 10.47 -12.11 -0.13 -11.13 16 13 C -0.04 -1.17 9.87 -16.59 -0.16 -1.33 16 14 C 0.26 7.25 6.41 -84.84 -0.54 6.71 16 15 C -0.43 -11.27 9.29 -37.75 -0.35 -11.62 16 16 H 0.09 2.25 7.91 -52.49 -0.41 1.83 16 17 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 18 N -0.78 -19.71 10.96 55.55 0.61 -19.10 16 19 Si 0.92 18.06 29.59 -169.99 -5.03 13.03 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 23 N -0.58 -14.90 9.19 -10.14 -0.09 -15.00 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.91 6.95 -51.93 -0.36 0.55 16 30 H 0.06 1.23 5.98 -51.93 -0.31 0.92 16 31 H 0.07 0.89 5.98 -51.93 -0.31 0.58 16 32 H 0.07 1.12 5.98 -51.93 -0.31 0.81 16 33 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.08 1.59 7.31 -51.93 -0.38 1.21 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.81 5.89 -51.93 -0.31 0.50 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.12 2.59 4.82 -52.49 -0.25 2.33 16 43 H 0.15 4.21 6.17 -52.49 -0.32 3.89 16 44 H 0.29 6.48 8.29 -40.82 -0.34 6.15 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -28.26 341.47 -8.62 -36.88 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.17 Total: 7.83 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.55 Total: -6.23 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.01 Total: -56.65 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.26 -8.62 -36.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163579390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.059 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds