Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47611 * 2 1 4 4 C 1.52997 * 109.46901 * 120.00192 * 2 1 3 5 5 N 1.46505 * 109.47312 * 174.99822 * 4 2 1 6 6 C 1.46496 * 120.00174 * 269.99915 * 5 4 2 7 7 C 1.52996 * 109.47268 * 270.00077 * 6 5 4 8 8 C 1.53004 * 109.47471 * 64.99658 * 7 6 5 9 9 C 1.53002 * 109.47386 * 184.99887 * 7 6 5 10 10 C 1.38832 * 119.99913 * 89.99794 * 5 4 2 11 11 C 1.39963 * 119.96669 * 4.97975 * 10 5 4 12 12 N 1.32132 * 120.31127 * 180.02562 * 11 10 5 13 13 C 1.31932 * 120.27442 * 359.65946 * 12 11 10 14 14 C 1.40684 * 119.93200 * 0.61697 * 13 12 11 15 15 C 1.41270 * 120.15717 * 179.68175 * 14 13 12 16 16 H 1.07991 * 120.00228 * 204.97735 * 15 14 13 17 17 C 1.40060 * 119.99687 * 24.97732 * 15 14 13 18 18 N 1.30729 * 120.00151 * 17.51719 * 17 15 14 19 19 Si 1.86800 * 119.99670 * 197.51404 * 17 15 14 20 20 H 1.48497 * 109.47111 * 265.18641 * 19 17 15 21 21 H 1.48500 * 109.47398 * 25.18742 * 19 17 15 22 22 H 1.48496 * 109.47004 * 145.18532 * 19 17 15 23 23 N 1.32231 * 119.96941 * 185.00242 * 10 5 4 24 24 H 1.08994 * 109.46876 * 300.00537 * 1 2 3 25 25 H 1.09002 * 109.46880 * 60.00118 * 1 2 3 26 26 H 1.08997 * 109.47430 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47216 * 240.00031 * 2 1 3 28 28 H 1.09002 * 109.46903 * 299.99868 * 3 2 1 29 29 H 1.09001 * 109.46805 * 59.99779 * 3 2 1 30 30 H 1.09002 * 109.47703 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47635 * 54.99767 * 4 2 1 32 32 H 1.09000 * 109.47151 * 294.99657 * 4 2 1 33 33 H 1.09005 * 109.46779 * 29.99869 * 6 5 4 34 34 H 1.09004 * 109.47205 * 149.99584 * 6 5 4 35 35 H 1.08999 * 109.47363 * 304.99914 * 7 6 5 36 36 H 1.09007 * 109.46532 * 60.00121 * 8 7 6 37 37 H 1.08992 * 109.46985 * 180.02562 * 8 7 6 38 38 H 1.08997 * 109.47067 * 300.00301 * 8 7 6 39 39 H 1.09000 * 109.46931 * 59.99494 * 9 7 6 40 40 H 1.09001 * 109.47224 * 179.97438 * 9 7 6 41 41 H 1.08995 * 109.47094 * 299.99860 * 9 7 6 42 42 H 1.07994 * 119.84654 * 0.02562 * 11 10 5 43 43 H 1.07995 * 120.03193 * 180.30391 * 13 12 11 44 44 H 0.97001 * 119.99840 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1258 -1.9920 0.5613 7 6 4.3452 -3.0825 1.6118 8 6 2.9910 -3.5773 2.1240 9 6 5.1102 -4.2492 0.9838 10 6 4.2907 0.1784 1.7314 11 6 3.6960 1.2394 2.4239 12 7 4.4419 2.1997 2.9410 13 6 5.7546 2.1632 2.8147 14 6 6.3634 1.1049 2.1158 15 6 7.7682 1.0646 1.9719 16 1 8.2112 0.5311 1.1440 17 6 8.5865 1.7165 2.9032 18 7 8.1040 2.0628 4.0678 19 14 10.3672 2.0909 2.4810 20 1 11.2378 1.0060 3.0008 21 1 10.5177 2.1827 1.0065 22 1 10.7618 3.3817 3.1001 23 7 5.6047 0.1324 1.5915 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1369 33 1 3.4756 -2.3723 -0.2267 34 1 5.0851 -1.7022 0.1325 35 1 4.9214 -2.6757 2.4429 36 1 2.4149 -3.9841 1.2928 37 1 3.1475 -4.3538 2.8727 38 1 2.4461 -2.7461 2.5714 39 1 6.0749 -3.8967 0.6189 40 1 5.2670 -5.0259 1.7323 41 1 4.5341 -4.6561 0.1528 42 1 2.6224 1.2734 2.5362 43 1 6.3609 2.9476 3.2431 44 1 8.6708 2.5140 4.7128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163579390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 5.703253 kcal Electronic energy + Delta-G solvation = -22544.188497 eV Core-core repulsion = 19494.943313 eV Total energy + Delta-G solvation = -3049.245184 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17589 -39.01745 -36.67771 -35.91137 -34.72832 -33.52663 -30.92058 -28.67753 -28.31083 -27.73425 -27.33403 -25.82409 -23.76905 -22.78462 -21.14780 -20.81799 -19.35914 -18.03971 -17.61311 -16.79407 -16.72989 -16.24547 -15.93457 -15.62553 -15.16543 -14.80289 -14.65654 -14.43008 -13.85967 -13.55593 -13.43990 -13.25611 -13.08213 -13.01886 -12.88487 -12.79827 -12.66950 -12.53959 -12.39248 -12.10618 -12.00696 -11.81870 -11.70686 -11.59343 -11.51165 -11.44151 -11.39324 -11.10752 -10.18687 -9.19512 -8.81804 -8.23771 -6.61142 0.78578 1.18517 1.39605 1.51633 1.57768 2.16660 2.27339 2.68674 3.79128 3.86515 3.94364 4.02962 4.12856 4.16849 4.20910 4.25982 4.37429 4.48242 4.59930 4.67279 4.73179 4.77661 4.80716 4.82314 4.88492 4.96716 5.00830 5.04715 5.06674 5.10132 5.11771 5.15654 5.26048 5.28512 5.34324 5.45703 5.48925 5.50124 5.51079 5.77104 6.16284 6.35656 6.43824 6.64590 6.88963 7.45601 7.92867 8.20235 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.005669 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.311771 B = 4938.020798 C = 5990.311927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.127 3.873 5 N -0.602 5.602 6 C 0.141 3.859 7 C -0.110 4.110 8 C -0.138 4.138 9 C -0.135 4.135 10 C 0.381 3.619 11 C -0.150 4.150 12 N -0.432 5.432 13 C -0.082 4.082 14 C 0.240 3.760 15 C -0.457 4.457 16 H 0.081 0.919 17 C 0.041 3.959 18 N -0.810 5.810 19 Si 0.999 3.001 20 H -0.259 1.259 21 H -0.257 1.257 22 H -0.259 1.259 23 N -0.600 5.600 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.139 0.861 44 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 -8.411 -6.362 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.195 4.195 4 C 0.004 3.996 5 N -0.317 5.317 6 C 0.017 3.983 7 C -0.130 4.130 8 C -0.195 4.195 9 C -0.193 4.193 10 C 0.139 3.861 11 C -0.312 4.312 12 N -0.144 5.144 13 C -0.249 4.249 14 C 0.112 3.888 15 C -0.490 4.490 16 H 0.100 0.900 17 C -0.178 4.178 18 N -0.435 5.435 19 Si 0.818 3.182 20 H -0.183 1.183 21 H -0.180 1.180 22 H -0.183 1.183 23 N -0.328 5.328 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.693 -8.395 -6.175 14.232 hybrid contribution 1.071 0.546 0.327 1.246 sum -8.622 -7.849 -5.848 13.044 Atomic orbital electron populations 1.21723 0.92515 1.02851 1.02336 1.21543 0.97157 0.95409 0.98516 1.21828 0.99300 0.97171 1.01196 1.21819 0.77807 1.01985 0.97960 1.46319 1.04360 1.19020 1.61959 1.21326 0.98085 0.84477 0.94364 1.21447 0.97604 0.96045 0.97913 1.21852 0.95722 1.00487 1.01427 1.21686 0.99575 0.96867 1.01133 1.19443 0.89421 0.88213 0.89021 1.22528 0.99506 0.97280 1.11879 1.67649 1.07291 1.25223 1.14274 1.23155 0.89827 1.01938 1.10024 1.19353 0.94678 0.86971 0.87758 1.19543 0.89682 1.29637 1.10187 0.90046 1.26949 1.06473 0.91608 0.92767 1.69817 1.40783 1.27768 1.05149 0.84948 0.74213 0.79047 0.80001 1.18343 1.18035 1.18303 1.68494 1.03928 1.28536 1.31886 0.92433 0.91983 0.90870 0.91281 0.92511 0.93139 0.96210 0.87821 0.91534 0.89056 0.93077 0.95593 0.90478 0.92743 0.93228 0.94045 0.92189 0.90545 0.83322 0.84417 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.11 -2.55 3.13 -10.80 -0.03 -2.58 16 3 C -0.14 -4.19 7.71 71.98 0.56 -3.63 16 4 C 0.13 3.38 4.01 86.38 0.35 3.72 16 5 N -0.60 -21.38 2.28 -703.37 -1.60 -22.98 16 6 C 0.14 4.50 4.96 86.38 0.43 4.93 16 7 C -0.11 -3.27 3.13 -10.79 -0.03 -3.31 16 8 C -0.14 -3.17 8.18 71.98 0.59 -2.59 16 9 C -0.13 -3.31 9.19 71.98 0.66 -2.64 16 10 C 0.38 17.95 6.03 133.37 0.80 18.75 16 11 C -0.15 -7.21 8.50 85.07 0.72 -6.49 16 12 N -0.43 -23.69 10.47 -192.23 -2.01 -25.70 16 13 C -0.08 -4.75 9.87 85.28 0.84 -3.91 16 14 C 0.24 14.00 6.41 40.15 0.26 14.26 16 15 C -0.46 -25.47 9.29 23.46 0.22 -25.25 16 16 H 0.08 4.45 7.91 -2.92 -0.02 4.43 16 17 C 0.04 2.05 5.14 85.30 0.44 2.48 16 18 N -0.81 -42.42 10.96 21.84 0.24 -42.18 16 19 Si 1.00 37.54 29.59 68.60 2.03 39.57 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 23 N -0.60 -32.57 9.19 -186.00 -1.71 -34.29 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.57 6.95 -2.39 -0.02 1.55 16 30 H 0.02 0.75 5.98 -2.39 -0.01 0.74 16 31 H 0.10 2.15 5.98 -2.39 -0.01 2.13 16 32 H 0.07 1.89 5.98 -2.39 -0.01 1.88 16 33 H 0.09 2.26 8.07 -2.38 -0.02 2.24 16 34 H 0.05 1.98 7.31 -2.39 -0.02 1.97 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.22 5.89 -2.39 -0.01 1.21 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.15 6.23 4.82 -2.91 -0.01 6.21 16 43 H 0.14 8.19 6.17 -2.91 -0.02 8.18 16 44 H 0.30 13.79 8.29 -92.71 -0.77 13.02 16 Total: -1.00 -66.67 341.47 4.38 -62.29 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.97 Total: 31.22 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 6.46 Total: -7.93 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -5.08 Total: -125.14 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -66.67 4.38 -62.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163579390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.996 kcal (2) G-P(sol) polarization free energy of solvation -66.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds