Wall clock time and date at job start Mon Mar 30 2020 01:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47161 * 2 1 4 4 C 1.52995 * 109.47345 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46966 * 179.97438 * 4 3 2 6 6 C 1.36914 * 119.99990 * 269.99560 * 5 4 3 7 7 H 1.07999 * 119.99633 * 145.19673 * 6 5 4 8 8 C 1.38812 * 119.99796 * 325.19749 * 6 5 4 9 9 N 1.31560 * 120.00271 * 337.81042 * 8 6 5 10 10 Si 1.86806 * 119.99747 * 157.81141 * 8 6 5 11 11 H 1.48490 * 109.47245 * 59.99860 * 10 8 6 12 12 H 1.48501 * 109.46769 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46820 * 299.99635 * 10 8 6 14 14 C 1.38839 * 120.00093 * 89.99566 * 5 4 3 15 15 C 1.39229 * 119.70995 * 172.08858 * 14 5 4 16 16 C 1.38316 * 119.08831 * 180.29296 * 15 14 5 17 17 C 1.50697 * 120.74903 * 179.73453 * 16 15 14 18 18 N 1.46898 * 109.47381 * 269.72891 * 17 16 15 19 19 C 1.46898 * 110.99831 * 66.04197 * 18 17 16 20 20 C 1.46901 * 110.99753 * 189.99883 * 18 17 16 21 21 C 1.38889 * 118.50285 * 359.46841 * 16 15 14 22 22 C 1.38120 * 119.34083 * 0.27245 * 21 16 15 23 23 N 1.31889 * 120.86696 * 359.97438 * 22 21 16 24 24 H 1.08997 * 109.46647 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47118 * 299.99771 * 1 2 3 26 26 H 1.08998 * 109.47136 * 60.00534 * 1 2 3 27 27 H 1.09005 * 109.47545 * 240.00300 * 2 1 3 28 28 H 1.08999 * 109.47652 * 119.99559 * 2 1 3 29 29 H 1.09001 * 109.46926 * 59.99326 * 3 2 1 30 30 H 1.09008 * 109.46505 * 300.00237 * 3 2 1 31 31 H 1.08995 * 109.47503 * 59.99537 * 4 3 2 32 32 H 1.09008 * 109.46725 * 299.99360 * 4 3 2 33 33 H 0.97009 * 120.00302 * 175.59294 * 9 8 6 34 34 H 1.07989 * 120.45697 * 0.03370 * 15 14 5 35 35 H 1.09003 * 109.47219 * 149.72502 * 17 16 15 36 36 H 1.09002 * 109.46447 * 29.72859 * 17 16 15 37 37 H 1.09001 * 109.46476 * 183.95178 * 19 18 17 38 38 H 1.08998 * 109.47023 * 63.95889 * 19 18 17 39 39 H 1.08995 * 109.47591 * 303.95350 * 19 18 17 40 40 H 1.08993 * 109.47335 * 299.99674 * 20 18 17 41 41 H 1.09001 * 109.46915 * 60.00081 * 20 18 17 42 42 H 1.09001 * 109.46913 * 179.97438 * 20 18 17 43 43 H 1.08004 * 120.32790 * 180.24962 * 21 16 15 44 44 H 1.08002 * 119.56646 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2859 3.4689 -1.1873 7 1 4.0942 4.5284 -1.2711 8 6 4.7632 2.7610 -2.2818 9 7 5.4002 1.6239 -2.1029 10 14 4.5010 3.4231 -4.0088 11 1 5.1481 4.7539 -4.1323 12 1 5.1013 2.4879 -4.9938 13 1 3.0455 3.5539 -4.2730 14 6 4.2900 3.4788 1.2008 15 6 4.9076 4.7266 1.1989 16 6 5.1378 5.3648 2.4042 17 6 5.8089 6.7134 2.4461 18 7 7.2626 6.5338 2.5574 19 6 7.8100 5.9084 1.3461 20 6 7.9309 7.8115 2.8383 21 6 4.7314 4.7372 3.5747 22 6 4.1192 3.5012 3.5025 23 7 3.9167 2.9133 2.3394 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.9330 0.9289 -0.8908 32 1 3.9336 0.9287 0.8892 33 1 5.6775 1.0975 -2.8692 34 1 5.2066 5.1879 0.2694 35 1 5.4450 7.2738 3.3073 36 1 5.5794 7.2618 1.5325 37 1 8.8754 5.7230 1.4828 38 1 7.6633 6.5741 0.4955 39 1 7.2976 4.9643 1.1612 40 1 7.7264 8.5138 2.0303 41 1 7.5561 8.2187 3.7774 42 1 9.0060 7.6497 2.9162 43 1 4.8929 5.2108 4.5318 44 1 3.8021 3.0098 4.4104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165159062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:59 Heat of formation + Delta-G solvation = 39.707708 kcal Electronic energy + Delta-G solvation = -22073.562408 eV Core-core repulsion = 19025.791768 eV Total energy + Delta-G solvation = -3047.770641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.30725 -37.22164 -36.15286 -34.03305 -32.21633 -31.62223 -29.40106 -27.82526 -27.28122 -26.68583 -24.89305 -22.91149 -22.03927 -21.59434 -20.43171 -19.54521 -17.38373 -16.13098 -15.50889 -15.18532 -14.95246 -14.69926 -14.68459 -14.42657 -14.07918 -13.63063 -13.32357 -13.20606 -12.78420 -12.24080 -12.14243 -12.01291 -12.01019 -11.54608 -11.47501 -11.40114 -11.32079 -11.17704 -11.11250 -10.68991 -10.56386 -10.37678 -10.35567 -10.18882 -9.71864 -9.27341 -8.69771 -8.40288 -8.26847 -8.05676 -6.80147 -6.25633 -3.95049 2.34217 2.51696 3.13095 3.17257 3.19719 4.01689 4.29200 4.73984 4.81697 5.14740 5.27848 5.34231 5.45578 5.51157 5.52610 5.56625 5.69596 5.74789 5.76791 5.88572 5.92649 5.94623 6.12059 6.23322 6.26816 6.35785 6.41432 6.43958 6.45295 6.52939 6.63530 6.77191 6.87797 6.89642 7.06856 7.12167 7.20345 7.28004 7.32390 7.45237 7.50636 7.73924 8.11387 8.55832 9.08148 9.27587 9.82717 10.57583 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.006162 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.568732 B = 4542.971475 C = 6128.047690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.125 4.125 4 C 0.121 3.879 5 N -0.421 5.421 6 C -0.309 4.309 7 H 0.087 0.913 8 C 0.038 3.962 9 N -0.855 5.855 10 Si 0.914 3.086 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.379 3.621 15 C -0.234 4.234 16 C -0.005 4.005 17 C 0.099 3.901 18 N -0.539 5.539 19 C 0.019 3.981 20 C 0.026 3.974 21 C -0.274 4.274 22 C 0.147 3.853 23 N -0.566 5.566 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.270 0.730 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.023 0.977 39 H 0.085 0.915 40 H 0.021 0.979 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 4.697 4.978 6.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.003 4.003 5 N -0.111 5.111 6 C -0.438 4.438 7 H 0.104 0.896 8 C -0.168 4.168 9 N -0.490 5.490 10 Si 0.741 3.259 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.198 1.198 14 C 0.140 3.860 15 C -0.261 4.261 16 C -0.012 4.012 17 C -0.028 4.028 18 N -0.263 5.263 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.300 4.300 22 C -0.014 4.014 23 N -0.287 5.287 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.203 3.302 4.881 6.015 hybrid contribution 0.202 1.649 -1.486 2.229 sum -1.001 4.951 3.396 6.086 Atomic orbital electron populations 1.21752 0.96748 1.00576 1.01429 1.21424 0.94879 0.97905 1.01464 1.21900 0.98035 0.95208 1.01281 1.21465 0.91214 0.84210 1.03403 1.42343 1.56521 1.11613 1.00643 1.19314 1.42450 0.95489 0.86535 0.89567 1.25316 0.94180 0.97019 1.00282 1.70030 1.32383 1.14777 1.31784 0.86193 0.78925 0.78901 0.81924 1.19752 1.20787 1.19805 1.18749 0.90727 0.90183 0.86386 1.21080 1.09278 0.98169 0.97623 1.19525 0.94399 0.94206 0.93100 1.20994 0.86991 0.94381 1.00437 1.61964 1.03573 1.23352 1.37419 1.22499 1.00157 1.00675 0.89539 1.22370 0.99462 0.90227 1.00226 1.21083 1.12233 0.99466 0.97251 1.22020 0.93456 0.91587 0.94351 1.67165 1.26722 1.37234 0.97582 0.93503 0.93100 0.93137 0.92449 0.92407 0.92719 0.92684 0.87893 0.92751 0.92008 0.86090 0.90491 0.94346 0.91983 0.95852 0.89648 0.95999 0.91648 0.91605 0.87435 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.55 5.54 -26.73 -0.15 -2.70 16 4 C 0.12 2.84 4.96 -4.05 -0.02 2.82 16 5 N -0.42 -10.55 2.64 -115.05 -0.30 -10.85 16 6 C -0.31 -7.91 8.38 -15.07 -0.13 -8.03 16 7 H 0.09 2.17 7.03 -52.49 -0.37 1.81 16 8 C 0.04 0.96 4.96 -17.46 -0.09 0.87 16 9 N -0.85 -22.38 11.31 55.49 0.63 -21.76 16 10 Si 0.91 19.51 29.61 -169.99 -5.03 14.48 16 11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 C 0.38 9.12 7.31 -155.06 -1.13 7.99 16 15 C -0.23 -5.19 7.21 -39.18 -0.28 -5.47 16 16 C 0.00 -0.09 4.90 -104.35 -0.51 -0.60 16 17 C 0.10 1.59 5.16 -4.98 -0.03 1.56 16 18 N -0.54 -8.39 5.01 -252.73 -1.27 -9.66 16 19 C 0.02 0.31 9.29 60.06 0.56 0.87 16 20 C 0.03 0.31 9.57 60.07 0.57 0.88 16 21 C -0.27 -5.10 9.81 -39.38 -0.39 -5.48 16 22 C 0.15 2.88 11.17 -17.57 -0.20 2.69 16 23 N -0.57 -12.89 9.21 -12.43 -0.11 -13.01 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.10 2.59 5.34 -51.93 -0.28 2.32 16 32 H 0.05 1.31 7.51 -51.92 -0.39 0.92 16 33 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 34 H 0.12 2.75 6.56 -52.49 -0.34 2.40 16 35 H 0.08 1.09 8.02 -51.93 -0.42 0.67 16 36 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 1.65 5.93 -51.93 -0.31 1.35 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 44 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -27.26 353.81 -9.91 -37.17 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.58 Total: 6.79 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.57 Total: -8.50 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.06 Total: -55.27 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.26 -9.91 -37.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.878 kcal (2) G-P(sol) polarization free energy of solvation -27.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds