Wall clock time and date at job start Mon Mar 30 2020 01:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47161 * 2 1 4 4 C 1.52995 * 109.47345 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46966 * 179.97438 * 4 3 2 6 6 C 1.36914 * 119.99990 * 269.99560 * 5 4 3 7 7 H 1.07999 * 119.99633 * 145.19673 * 6 5 4 8 8 C 1.38812 * 119.99796 * 325.19749 * 6 5 4 9 9 N 1.31560 * 120.00271 * 337.81042 * 8 6 5 10 10 Si 1.86806 * 119.99747 * 157.81141 * 8 6 5 11 11 H 1.48490 * 109.47245 * 59.99860 * 10 8 6 12 12 H 1.48501 * 109.46769 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46820 * 299.99635 * 10 8 6 14 14 C 1.38839 * 120.00093 * 89.99566 * 5 4 3 15 15 C 1.39229 * 119.70995 * 172.08858 * 14 5 4 16 16 C 1.38316 * 119.08831 * 180.29296 * 15 14 5 17 17 C 1.50697 * 120.74903 * 179.73453 * 16 15 14 18 18 N 1.46898 * 109.47381 * 269.72891 * 17 16 15 19 19 C 1.46898 * 110.99831 * 66.04197 * 18 17 16 20 20 C 1.46901 * 110.99753 * 189.99883 * 18 17 16 21 21 C 1.38889 * 118.50285 * 359.46841 * 16 15 14 22 22 C 1.38120 * 119.34083 * 0.27245 * 21 16 15 23 23 N 1.31889 * 120.86696 * 359.97438 * 22 21 16 24 24 H 1.08997 * 109.46647 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47118 * 299.99771 * 1 2 3 26 26 H 1.08998 * 109.47136 * 60.00534 * 1 2 3 27 27 H 1.09005 * 109.47545 * 240.00300 * 2 1 3 28 28 H 1.08999 * 109.47652 * 119.99559 * 2 1 3 29 29 H 1.09001 * 109.46926 * 59.99326 * 3 2 1 30 30 H 1.09008 * 109.46505 * 300.00237 * 3 2 1 31 31 H 1.08995 * 109.47503 * 59.99537 * 4 3 2 32 32 H 1.09008 * 109.46725 * 299.99360 * 4 3 2 33 33 H 0.97009 * 120.00302 * 175.59294 * 9 8 6 34 34 H 1.07989 * 120.45697 * 0.03370 * 15 14 5 35 35 H 1.09003 * 109.47219 * 149.72502 * 17 16 15 36 36 H 1.09002 * 109.46447 * 29.72859 * 17 16 15 37 37 H 1.09001 * 109.46476 * 183.95178 * 19 18 17 38 38 H 1.08998 * 109.47023 * 63.95889 * 19 18 17 39 39 H 1.08995 * 109.47591 * 303.95350 * 19 18 17 40 40 H 1.08993 * 109.47335 * 299.99674 * 20 18 17 41 41 H 1.09001 * 109.46915 * 60.00081 * 20 18 17 42 42 H 1.09001 * 109.46913 * 179.97438 * 20 18 17 43 43 H 1.08004 * 120.32790 * 180.24962 * 21 16 15 44 44 H 1.08002 * 119.56646 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 -0.0013 6 6 4.2859 3.4689 -1.1873 7 1 4.0942 4.5284 -1.2711 8 6 4.7632 2.7610 -2.2818 9 7 5.4002 1.6239 -2.1029 10 14 4.5010 3.4231 -4.0088 11 1 5.1481 4.7539 -4.1323 12 1 5.1013 2.4879 -4.9938 13 1 3.0455 3.5539 -4.2730 14 6 4.2900 3.4788 1.2008 15 6 4.9076 4.7266 1.1989 16 6 5.1378 5.3648 2.4042 17 6 5.8089 6.7134 2.4461 18 7 7.2626 6.5338 2.5574 19 6 7.8100 5.9084 1.3461 20 6 7.9309 7.8115 2.8383 21 6 4.7314 4.7372 3.5747 22 6 4.1192 3.5012 3.5025 23 7 3.9167 2.9133 2.3394 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9563 -0.8901 31 1 3.9330 0.9289 -0.8908 32 1 3.9336 0.9287 0.8892 33 1 5.6775 1.0975 -2.8692 34 1 5.2066 5.1879 0.2694 35 1 5.4450 7.2738 3.3073 36 1 5.5794 7.2618 1.5325 37 1 8.8754 5.7230 1.4828 38 1 7.6633 6.5741 0.4955 39 1 7.2976 4.9643 1.1612 40 1 7.7264 8.5138 2.0303 41 1 7.5561 8.2187 3.7774 42 1 9.0060 7.6497 2.9162 43 1 4.8929 5.2108 4.5318 44 1 3.8021 3.0098 4.4104 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165159062.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:59 Heat of formation + Delta-G solvation = 25.638952 kcal Electronic energy + Delta-G solvation = -22074.172476 eV Core-core repulsion = 19025.791768 eV Total energy + Delta-G solvation = -3048.380708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.95611 -38.65832 -37.72328 -35.56375 -33.94539 -33.27256 -30.99892 -29.45401 -28.52170 -27.98827 -26.68237 -24.42212 -23.61558 -23.01144 -21.93194 -21.18297 -19.17549 -17.88553 -17.12506 -16.62880 -16.40387 -16.23277 -16.12665 -15.84690 -15.52804 -15.22211 -14.95206 -14.74260 -14.24745 -13.77875 -13.62962 -13.35265 -13.26419 -13.11918 -12.99640 -12.82702 -12.73714 -12.60986 -12.48923 -12.24537 -12.11959 -11.99455 -11.88090 -11.76860 -11.40841 -11.07176 -10.34354 -10.16137 -9.94177 -9.30194 -8.64083 -8.09635 -5.89208 0.72495 0.86997 1.39953 1.44366 1.50565 2.25064 2.84750 3.06182 3.10704 3.52125 3.90479 3.99227 4.12145 4.17038 4.28108 4.33694 4.36763 4.45565 4.56749 4.57127 4.65895 4.71543 4.78610 4.80469 4.88641 4.90881 4.94628 5.02402 5.02804 5.06398 5.12130 5.21097 5.26882 5.35934 5.41438 5.44774 5.47261 5.64777 5.79840 6.00620 6.02129 6.15150 6.30936 6.71331 7.31593 7.43855 8.02033 8.69908 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.006162 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.568732 B = 4542.971475 C = 6128.047690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.129 3.871 5 N -0.446 5.446 6 C -0.323 4.323 7 H 0.078 0.922 8 C -0.002 4.002 9 N -0.889 5.889 10 Si 0.977 3.023 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.269 1.269 14 C 0.356 3.644 15 C -0.253 4.253 16 C 0.000 4.000 17 C 0.102 3.898 18 N -0.549 5.549 19 C 0.025 3.975 20 C 0.025 3.975 21 C -0.259 4.259 22 C 0.137 3.863 23 N -0.586 5.586 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.270 0.730 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.024 0.976 39 H 0.046 0.954 40 H 0.028 0.972 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.144 0.856 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 6.079 6.561 9.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.149 4.149 4 C 0.005 3.995 5 N -0.140 5.140 6 C -0.452 4.452 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.526 5.526 10 Si 0.800 3.200 11 H -0.192 1.192 12 H -0.204 1.204 13 H -0.194 1.194 14 C 0.119 3.881 15 C -0.281 4.281 16 C -0.008 4.008 17 C -0.025 4.025 18 N -0.273 5.273 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.285 4.285 22 C -0.024 4.024 23 N -0.307 5.307 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.162 0.838 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.442 4.713 6.509 8.164 hybrid contribution 0.351 1.316 -1.722 2.195 sum -1.091 6.029 4.787 7.775 Atomic orbital electron populations 1.21701 0.94319 1.02255 1.01619 1.21395 0.96952 0.95268 1.01599 1.21740 0.95904 0.97379 0.99890 1.21321 0.92979 0.83734 1.01430 1.42447 1.58564 1.12051 1.00910 1.19420 1.42800 0.95429 0.87517 0.90394 1.26064 0.93715 0.97249 1.03404 1.70126 1.33750 1.16081 1.32614 0.85240 0.78811 0.78364 0.77538 1.19237 1.20379 1.19431 1.19096 0.91414 0.90892 0.86740 1.21063 1.10447 0.98183 0.98357 1.19942 0.93265 0.95435 0.92178 1.21020 0.87393 0.92416 1.01668 1.61963 1.03266 1.25527 1.36582 1.22370 1.00585 0.98995 0.90352 1.22468 0.99918 0.88521 1.01303 1.21529 1.09797 0.98741 0.98404 1.22724 0.92909 0.92265 0.94461 1.67193 1.27259 1.38091 0.98171 0.91066 0.92791 0.93090 0.92595 0.91997 0.93734 0.94138 0.89915 0.94306 0.92004 0.87817 0.87634 0.94588 0.90428 0.95719 0.93520 0.95374 0.89726 0.90442 0.83814 0.81375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.11 -3.85 5.93 30.60 0.18 -3.67 16 3 C -0.11 -4.65 5.54 30.59 0.17 -4.48 16 4 C 0.13 6.40 4.96 86.38 0.43 6.83 16 5 N -0.45 -23.56 2.64 -517.90 -1.37 -24.92 16 6 C -0.32 -17.37 8.38 84.04 0.70 -16.67 16 7 H 0.08 4.17 7.03 -2.91 -0.02 4.15 16 8 C 0.00 -0.09 4.96 84.87 0.42 0.33 16 9 N -0.89 -48.68 11.31 21.65 0.24 -48.43 16 10 Si 0.98 41.19 29.61 68.60 2.03 43.22 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 14 C 0.36 17.77 7.31 133.11 0.97 18.74 16 15 C -0.25 -11.55 7.21 22.53 0.16 -11.39 16 16 C 0.00 -0.01 4.90 -19.69 -0.10 -0.10 16 17 C 0.10 3.04 5.16 85.56 0.44 3.48 16 18 N -0.55 -15.82 5.01 -953.49 -4.78 -20.60 16 19 C 0.03 0.81 9.29 127.69 1.19 2.00 16 20 C 0.03 0.52 9.57 127.69 1.22 1.75 16 21 C -0.26 -8.95 9.81 22.40 0.22 -8.73 16 22 C 0.14 5.11 11.17 84.66 0.95 6.05 16 23 N -0.59 -26.96 9.21 -193.23 -1.78 -28.74 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.08 4.42 5.34 -2.39 -0.01 4.41 16 32 H 0.04 1.97 7.51 -2.38 -0.02 1.95 16 33 H 0.27 13.93 8.32 -92.70 -0.77 13.16 16 34 H 0.10 4.99 6.56 -2.92 -0.02 4.97 16 35 H 0.11 2.55 8.02 -2.39 -0.02 2.53 16 36 H 0.04 1.09 8.08 -2.39 -0.02 1.07 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 1.86 5.93 -2.39 -0.01 1.84 16 40 H 0.03 0.55 8.14 -2.39 -0.02 0.54 16 41 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 44 H 0.17 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -61.70 353.81 2.97 -58.73 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.95 Total: 29.74 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 7.67 Total: -9.00 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -7.68 Total: -122.69 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -61.70 2.97 -58.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165159062.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.371 kcal (2) G-P(sol) polarization free energy of solvation -61.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds