Wall clock time and date at job start Mon Mar 30 2020 01:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46975 * 2 1 4 4 C 1.52998 * 109.46975 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.36934 * 119.99912 * 271.27702 * 5 4 3 7 7 H 1.07998 * 120.00184 * 145.74827 * 6 5 4 8 8 C 1.38846 * 120.00023 * 325.74300 * 6 5 4 9 9 N 1.31532 * 120.00396 * 153.57764 * 8 6 5 10 10 Si 1.86809 * 119.99894 * 333.57454 * 8 6 5 11 11 H 1.48496 * 109.46990 * 95.05917 * 10 8 6 12 12 H 1.48500 * 109.46933 * 215.05922 * 10 8 6 13 13 H 1.48501 * 109.47102 * 335.05695 * 10 8 6 14 14 C 1.38519 * 119.99706 * 91.26853 * 5 4 3 15 15 C 1.39702 * 120.53930 * 5.00626 * 14 5 4 16 16 C 1.38137 * 118.31865 * 180.02562 * 15 14 5 17 17 C 1.50704 * 120.40167 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47498 * 124.99356 * 17 16 15 19 19 C 1.53000 * 109.47295 * 179.97438 * 18 17 16 20 20 N 1.32559 * 119.19732 * 359.97438 * 16 15 14 21 21 C 1.31794 * 121.02967 * 0.02562 * 20 16 15 22 22 C 1.50700 * 119.07871 * 179.97438 * 21 20 16 23 23 N 1.31741 * 121.84280 * 359.71483 * 21 20 16 24 24 H 1.09000 * 109.47095 * 60.00316 * 1 2 3 25 25 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47281 * 299.99948 * 1 2 3 27 27 H 1.09001 * 109.47281 * 240.00052 * 2 1 3 28 28 H 1.09000 * 109.47095 * 119.99684 * 2 1 3 29 29 H 1.09001 * 109.47073 * 59.99925 * 3 2 1 30 30 H 1.09000 * 109.46951 * 299.99772 * 3 2 1 31 31 H 1.09001 * 109.47281 * 60.00052 * 4 3 2 32 32 H 1.09000 * 109.47095 * 299.99684 * 4 3 2 33 33 H 0.97002 * 120.00516 * 180.02562 * 9 8 6 34 34 H 1.07997 * 120.84371 * 359.97438 * 15 14 5 35 35 H 1.09001 * 109.46920 * 245.00135 * 17 16 15 36 36 H 1.09004 * 109.46715 * 4.99136 * 17 16 15 37 37 H 1.08996 * 109.47348 * 300.00632 * 18 17 16 38 38 H 1.09008 * 109.46826 * 60.00145 * 18 17 16 39 39 H 1.08991 * 109.46956 * 60.00077 * 19 18 17 40 40 H 1.08998 * 109.47159 * 180.02562 * 19 18 17 41 41 H 1.09004 * 109.46936 * 299.99978 * 19 18 17 42 42 H 1.08997 * 109.46976 * 90.00057 * 22 21 20 43 43 H 1.08997 * 109.47014 * 209.99719 * 22 21 20 44 44 H 1.08998 * 109.47001 * 329.99881 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2621 3.4774 -1.1859 7 1 4.0774 4.5392 -1.2560 8 6 4.7063 2.7751 -2.2982 9 7 4.4234 3.2101 -3.5069 10 14 5.7058 1.2123 -2.0783 11 1 4.8029 0.0348 -2.1378 12 1 6.7176 1.1154 -3.1608 13 1 6.3913 1.2444 -0.7614 14 6 4.3137 3.4686 1.1991 15 6 4.2098 2.7813 2.4109 16 6 4.4742 3.4692 3.5792 17 6 4.3768 2.7736 4.9126 18 6 5.6973 2.9329 5.6687 19 6 5.5981 2.2272 7.0226 20 7 4.8156 4.7484 3.5133 21 6 4.9050 5.3688 2.3540 22 6 5.2963 6.8239 2.3303 23 7 4.6668 4.7512 1.2150 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 4.7334 2.7193 -4.2840 34 1 3.9290 1.7387 2.4338 35 1 3.5688 3.2162 5.4951 36 1 4.1734 1.7142 4.7557 37 1 6.5052 2.4904 5.0861 38 1 5.9005 3.9923 5.8255 39 1 5.3946 1.1680 6.8661 40 1 6.5387 2.3411 7.5614 41 1 4.7902 2.6703 7.6049 42 1 6.3806 6.9074 2.2579 43 1 4.8362 7.3098 1.4699 44 1 4.9549 7.3069 3.2459 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:11 Heat of formation + Delta-G solvation = 33.920289 kcal Electronic energy + Delta-G solvation = -22024.675565 eV Core-core repulsion = 18976.653963 eV Total energy + Delta-G solvation = -3048.021602 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05231 -37.34584 -35.29347 -34.34231 -32.59149 -32.02646 -31.01489 -28.56948 -27.94510 -27.01760 -24.62861 -23.67614 -21.87848 -21.09233 -20.76754 -20.16200 -17.72473 -16.47657 -16.05994 -15.28742 -14.96651 -14.84633 -14.37044 -14.31925 -13.92240 -13.74991 -13.23610 -13.05913 -12.95750 -12.68143 -12.53556 -12.18322 -12.07992 -11.98050 -11.75346 -11.59034 -11.32909 -11.15840 -11.05103 -10.85298 -10.71568 -10.57991 -10.54500 -10.20836 -10.12152 -9.67817 -9.56808 -8.95440 -8.63608 -8.03478 -7.24934 -6.55750 -3.92636 2.00337 2.34752 2.97166 3.16175 3.21291 3.95725 4.09365 4.63094 4.76083 4.89840 5.02544 5.18541 5.20522 5.25085 5.27438 5.37421 5.45101 5.55121 5.65750 5.79969 5.82610 5.89769 5.92540 5.96986 6.01752 6.03289 6.07620 6.09305 6.11692 6.14724 6.20120 6.25102 6.34457 6.35474 6.50150 6.54781 6.57952 6.72148 6.76976 7.21874 7.47310 8.02470 8.24171 8.54191 9.06039 9.25735 9.51950 10.54934 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.006194 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.136526 B = 4519.502268 C = 5516.306583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.129 4.129 4 C 0.103 3.897 5 N -0.430 5.430 6 C -0.303 4.303 7 H 0.115 0.885 8 C 0.062 3.938 9 N -0.849 5.849 10 Si 0.866 3.134 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.403 3.597 15 C -0.327 4.327 16 C 0.193 3.807 17 C -0.061 4.061 18 C -0.114 4.114 19 C -0.150 4.150 20 N -0.598 5.598 21 C 0.349 3.651 22 C -0.075 4.075 23 N -0.566 5.566 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.276 0.724 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 -4.647 12.080 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.020 4.020 5 N -0.122 5.122 6 C -0.431 4.431 7 H 0.132 0.868 8 C -0.146 4.146 9 N -0.483 5.483 10 Si 0.693 3.307 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.188 1.188 14 C 0.159 3.841 15 C -0.358 4.358 16 C 0.052 3.948 17 C -0.099 4.099 18 C -0.152 4.152 19 C -0.208 4.208 20 N -0.324 5.324 21 C 0.078 3.922 22 C -0.134 4.134 23 N -0.293 5.293 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.899 -3.905 11.538 12.328 hybrid contribution 0.337 -1.836 -0.263 1.885 sum -1.563 -5.741 11.275 12.749 Atomic orbital electron populations 1.21737 0.95922 1.01028 1.01904 1.21484 0.95855 0.97090 1.01698 1.21926 0.95374 0.96279 1.03193 1.21859 0.94515 0.83910 1.01756 1.42622 1.55922 1.10799 1.02862 1.19165 1.43775 0.96526 0.83663 0.86758 1.25315 0.96460 0.98016 0.94765 1.69849 1.40236 1.40294 0.97948 0.87146 0.81287 0.83170 0.79087 1.20001 1.21124 1.18815 1.18544 0.90162 0.89091 0.86343 1.21672 1.19523 1.01514 0.93126 1.20896 0.90077 0.89817 0.93986 1.20449 0.98611 0.98974 0.91911 1.21387 0.96770 1.01815 0.95187 1.21788 1.01390 1.00324 0.97287 1.67857 1.25267 1.09988 1.29270 1.22653 0.89876 0.96379 0.83309 1.20377 1.01687 0.88533 1.02796 1.67791 1.22385 1.09078 1.30042 0.92627 0.93140 0.92883 0.92070 0.92306 0.92056 0.90526 0.90851 0.91491 0.91394 0.86031 0.90535 0.91071 0.92447 0.90774 0.93022 0.92966 0.92823 0.90750 0.90408 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.13 -2.29 5.54 -26.73 -0.15 -2.44 16 4 C 0.10 2.10 4.20 -4.04 -0.02 2.08 16 5 N -0.43 -10.33 2.31 -114.84 -0.27 -10.60 16 6 C -0.30 -8.24 9.45 -15.05 -0.14 -8.38 16 7 H 0.11 3.46 7.79 -52.49 -0.41 3.05 16 8 C 0.06 1.66 5.26 -17.45 -0.09 1.56 16 9 N -0.85 -23.64 13.96 55.49 0.77 -22.87 16 10 Si 0.87 20.22 25.21 -169.99 -4.28 15.93 16 11 H -0.27 -5.92 6.60 56.52 0.37 -5.54 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.40 9.50 7.34 -154.73 -1.14 8.36 16 15 C -0.33 -6.63 8.96 -39.07 -0.35 -6.98 16 16 C 0.19 3.61 6.20 -82.31 -0.51 3.10 16 17 C -0.06 -0.87 5.64 -27.88 -0.16 -1.03 16 18 C -0.11 -1.47 5.80 -26.73 -0.16 -1.63 16 19 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 20 N -0.60 -11.92 9.93 -7.06 -0.07 -11.99 16 21 C 0.35 7.30 7.64 -157.24 -1.20 6.10 16 22 C -0.08 -1.23 10.32 36.01 0.37 -0.85 16 23 N -0.57 -13.61 9.40 -9.94 -0.09 -13.71 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.07 1.57 3.08 -51.93 -0.16 1.41 16 32 H 0.07 1.22 5.99 -51.93 -0.31 0.91 16 33 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.12 2.19 6.08 -52.49 -0.32 1.87 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.04 7.98 -51.92 -0.41 0.62 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -29.57 353.03 -9.11 -38.68 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.53 Total: 3.86 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.96 Total: -4.64 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.35 Total: -59.16 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.28 Total: 15.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.57 -9.11 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.598 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds