Wall clock time and date at job start Mon Mar 30 2020 01:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 111.00117 * 2 1 4 4 C 1.46900 * 110.99758 * 123.95418 * 2 1 3 5 5 C 1.53003 * 109.47274 * 85.98937 * 4 2 1 6 6 C 1.53005 * 109.46736 * 296.61333 * 5 4 2 7 7 C 1.53005 * 109.47336 * 176.61538 * 5 4 2 8 8 C 1.53000 * 109.46895 * 56.61139 * 5 4 2 9 9 N 1.46508 * 109.46677 * 180.02562 * 8 5 4 10 10 C 1.38088 * 119.99823 * 180.02562 * 9 8 5 11 11 N 1.32274 * 119.90541 * 0.02562 * 10 9 8 12 12 C 1.31968 * 121.86390 * 179.97438 * 11 10 9 13 13 C 1.38679 * 121.44847 * 359.97438 * 12 11 10 14 14 C 1.37999 * 119.62816 * 359.97438 * 13 12 11 15 15 C 1.41002 * 118.28495 * 359.74995 * 14 13 12 16 16 C 1.41021 * 120.71177 * 180.24485 * 15 14 13 17 17 H 1.07999 * 119.99801 * 149.76599 * 16 15 14 18 18 C 1.39945 * 119.99538 * 329.76731 * 16 15 14 19 19 N 1.30865 * 120.00719 * 344.66998 * 18 16 15 20 20 Si 1.86806 * 119.99583 * 164.66937 * 18 16 15 21 21 H 1.48497 * 109.46974 * 60.00193 * 20 18 16 22 22 H 1.48496 * 109.47229 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47188 * 300.00345 * 20 18 16 24 24 H 1.09004 * 109.47378 * 303.25688 * 1 2 3 25 25 H 1.09001 * 109.47277 * 63.26049 * 1 2 3 26 26 H 1.09003 * 109.47253 * 183.25197 * 1 2 3 27 27 H 1.08999 * 109.47452 * 183.95203 * 3 2 1 28 28 H 1.09001 * 109.47258 * 303.95228 * 3 2 1 29 29 H 1.09006 * 109.47226 * 63.95224 * 3 2 1 30 30 H 1.09005 * 109.47132 * 325.98732 * 4 2 1 31 31 H 1.08994 * 109.47143 * 205.98692 * 4 2 1 32 32 H 1.09005 * 109.46922 * 191.43265 * 6 5 4 33 33 H 1.08994 * 109.47094 * 311.42996 * 6 5 4 34 34 H 1.08997 * 109.46909 * 71.43427 * 6 5 4 35 35 H 1.08997 * 109.46568 * 302.10809 * 7 5 4 36 36 H 1.09003 * 109.46994 * 62.10535 * 7 5 4 37 37 H 1.08995 * 109.47062 * 182.10918 * 7 5 4 38 38 H 1.08996 * 109.47359 * 300.00048 * 8 5 4 39 39 H 1.08999 * 109.46649 * 60.00842 * 8 5 4 40 40 H 0.96997 * 120.00091 * 359.97438 * 9 8 5 41 41 H 1.08002 * 119.27609 * 179.97438 * 12 11 10 42 42 H 1.08005 * 120.18161 * 180.02562 * 13 12 11 43 43 H 1.08004 * 120.86165 * 180.02562 * 14 13 12 44 44 H 0.96999 * 120.00623 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 2.0839 -2.2458 0.7589 6 6 0.6799 -2.7852 0.4781 7 6 2.7106 -3.0310 1.9129 8 6 2.9497 -2.4008 -0.4931 9 7 3.0340 -3.8177 -0.8561 10 6 3.7676 -4.2051 -1.9599 11 7 4.3938 -3.2955 -2.6880 12 6 5.1057 -3.6226 -3.7500 13 6 5.2337 -4.9421 -4.1569 14 6 4.6062 -5.9409 -3.4406 15 6 3.8539 -5.5769 -2.3049 16 6 3.1959 -6.5564 -1.5327 17 1 3.0504 -6.4012 -0.4738 18 6 2.7316 -7.7294 -2.1384 19 7 2.6312 -7.7975 -3.4414 20 14 2.2552 -9.1980 -1.0869 21 1 1.1570 -8.8113 -0.1651 22 1 1.7981 -10.3066 -1.9629 23 1 3.4310 -9.6433 -0.2967 24 1 -0.3634 0.5636 0.8594 25 1 -0.3634 0.4624 -0.9178 26 1 -0.3634 -1.0260 0.0583 27 1 3.0828 1.3432 -0.0708 28 1 1.5898 1.9163 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.3303 -0.6491 1.9933 31 1 2.9879 -0.3971 1.3959 32 1 0.7156 -3.8724 0.4084 33 1 0.0105 -2.4948 1.2877 34 1 0.3136 -2.3727 -0.4620 35 1 3.6957 -2.6223 2.1376 36 1 2.0744 -2.9512 2.7943 37 1 2.8081 -4.0787 1.6287 38 1 2.5032 -1.8414 -1.3152 39 1 3.9499 -2.0165 -0.2929 40 1 2.5751 -4.4836 -0.3205 41 1 5.5996 -2.8455 -4.3145 42 1 5.8218 -5.1868 -5.0292 43 1 4.6927 -6.9751 -3.7395 44 1 2.3097 -8.6107 -3.8613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168762360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:26 Heat of formation + Delta-G solvation = 18.844766 kcal Electronic energy + Delta-G solvation = -22264.435365 eV Core-core repulsion = 19215.760039 eV Total energy + Delta-G solvation = -3048.675326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.50939 -39.63152 -36.82864 -35.74054 -34.40521 -32.27698 -30.46323 -29.26483 -27.94164 -27.47569 -27.27534 -26.27057 -23.29545 -22.93696 -22.24672 -19.80858 -19.07877 -18.24131 -17.20235 -16.74992 -16.35930 -15.99199 -15.91468 -15.51667 -15.34389 -15.03486 -14.48271 -14.25894 -14.10020 -14.02658 -13.69282 -13.30462 -13.17872 -13.16816 -13.15001 -12.96831 -12.68548 -12.64797 -12.57751 -12.21534 -12.18610 -11.68808 -11.58920 -11.39862 -11.25434 -11.07616 -10.58312 -9.93148 -9.74075 -9.13451 -8.58855 -8.19704 -6.12283 0.97641 1.26176 1.41716 1.51689 1.56001 2.25344 2.86065 2.94633 3.10489 3.83656 3.87114 3.97051 4.07670 4.34767 4.37660 4.42600 4.55643 4.57978 4.65588 4.69138 4.73646 4.80725 4.86368 4.88970 4.95047 5.00144 5.03390 5.05006 5.06993 5.19252 5.21615 5.25049 5.32152 5.35959 5.47803 5.55476 5.82547 5.95261 6.14381 6.20168 6.22124 6.44927 6.82497 6.91728 6.97893 7.22854 7.99623 8.45729 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.005361 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.837176 B = 5222.043893 C = 6273.171820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.564 5.564 3 C 0.028 3.972 4 C 0.075 3.925 5 C -0.063 4.063 6 C -0.138 4.138 7 C -0.138 4.138 8 C 0.175 3.825 9 N -0.720 5.720 10 C 0.304 3.696 11 N -0.547 5.547 12 C 0.006 3.994 13 C -0.204 4.204 14 C -0.142 4.142 15 C 0.000 4.000 16 C -0.485 4.485 17 H 0.078 0.922 18 C 0.036 3.964 19 N -0.839 5.839 20 Si 0.977 3.023 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.263 1.263 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.027 0.973 40 H 0.402 0.598 41 H 0.148 0.852 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 10.290 10.129 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.288 5.288 3 C -0.120 4.120 4 C -0.054 4.054 5 C -0.064 4.064 6 C -0.195 4.195 7 C -0.196 4.196 8 C 0.051 3.949 9 N -0.359 5.359 10 C 0.065 3.935 11 N -0.266 5.266 12 C -0.147 4.147 13 C -0.227 4.227 14 C -0.169 4.169 15 C -0.007 4.007 16 C -0.517 4.517 17 H 0.096 0.904 18 C -0.177 4.177 19 N -0.466 5.466 20 Si 0.799 3.201 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.188 1.188 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.240 0.760 41 H 0.165 0.835 42 H 0.137 0.863 43 H 0.120 0.880 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.433 11.008 9.713 15.335 hybrid contribution -0.369 -1.536 0.377 1.624 sum -4.802 9.472 10.091 14.649 Atomic orbital electron populations 1.22836 0.86895 1.03443 1.00806 1.61799 1.08714 1.14436 1.43845 1.22386 1.00555 0.88220 1.00795 1.22088 1.00243 0.91727 0.91301 1.20738 0.95510 0.95769 0.94381 1.22016 0.95605 1.00115 1.01717 1.21821 1.00798 0.99458 0.97525 1.20816 0.97069 0.81183 0.95863 1.43961 1.55686 1.07732 1.28547 1.18865 0.94883 0.88692 0.91033 1.66727 1.13232 1.37635 1.08979 1.21948 1.02303 0.94773 0.95658 1.21618 1.04551 0.94457 1.02060 1.21243 0.98907 0.98120 0.98594 1.18264 0.95384 0.91331 0.95745 1.19264 1.34480 1.02040 0.95879 0.90384 1.26606 0.93261 1.01797 0.96067 1.69878 1.35948 1.28810 1.11963 0.85320 0.79386 0.76735 0.78669 1.18119 1.19942 1.18760 0.94810 0.91823 0.89861 0.91763 0.91294 0.94746 0.92317 0.90911 0.93967 0.90842 0.92497 0.92561 0.90615 0.93572 0.93727 0.95504 0.76050 0.83481 0.86317 0.88036 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.01 127.69 1.15 1.31 16 2 N -0.56 -13.15 3.93 -948.84 -3.73 -16.88 16 3 C 0.03 0.55 9.44 127.69 1.20 1.76 16 4 C 0.07 1.64 4.23 86.30 0.36 2.00 16 5 C -0.06 -1.66 0.60 -52.18 -0.03 -1.69 16 6 C -0.14 -3.56 6.55 71.98 0.47 -3.09 16 7 C -0.14 -3.36 8.30 71.98 0.60 -2.76 16 8 C 0.18 6.34 4.35 86.38 0.38 6.71 16 9 N -0.72 -30.92 5.04 -343.63 -1.73 -32.65 16 10 C 0.30 15.59 7.52 134.05 1.01 16.60 16 11 N -0.55 -27.59 9.54 -191.45 -1.83 -29.42 16 12 C 0.01 0.30 11.17 84.78 0.95 1.24 16 13 C -0.20 -9.92 10.08 22.32 0.22 -9.69 16 14 C -0.14 -7.72 8.76 22.89 0.20 -7.52 16 15 C 0.00 -0.01 5.53 -21.06 -0.12 -0.12 16 16 C -0.48 -25.51 8.39 23.37 0.20 -25.31 16 17 H 0.08 3.85 6.89 -2.91 -0.02 3.83 16 18 C 0.04 1.81 5.17 85.25 0.44 2.25 16 19 N -0.84 -44.64 11.25 21.83 0.25 -44.39 16 20 Si 0.98 38.14 29.59 68.60 2.03 40.17 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.73 4.01 -2.39 -0.01 1.72 16 27 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 1.08 7.83 -2.38 -0.02 1.06 16 31 H 0.07 1.56 7.73 -2.39 -0.02 1.54 16 32 H 0.04 1.21 7.17 -2.38 -0.02 1.20 16 33 H 0.07 1.49 7.66 -2.39 -0.02 1.48 16 34 H 0.06 1.62 6.22 -2.39 -0.01 1.61 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.29 6.81 -2.39 -0.02 1.27 16 38 H 0.04 1.81 7.51 -2.39 -0.02 1.80 16 39 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.40 16.69 4.59 -92.71 -0.43 16.27 16 41 H 0.15 5.91 8.06 -2.91 -0.02 5.88 16 42 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 43 H 0.10 5.70 6.62 -2.91 -0.02 5.68 16 44 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 Total: -1.00 -61.92 342.22 2.58 -59.35 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: 0.55 Total: 42.15 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 7.03 Total: -18.32 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -7.04 Total: -123.34 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -61.92 2.58 -59.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168762360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.191 kcal (2) G-P(sol) polarization free energy of solvation -61.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds