Wall clock time and date at job start Mon Mar 30 2020 01:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00317 * 2 1 4 4 C 1.46909 * 111.00127 * 123.95133 * 2 1 3 5 5 C 1.52996 * 109.47013 * 156.91465 * 4 2 1 6 6 C 1.53004 * 109.46949 * 187.96811 * 5 4 2 7 7 C 1.53009 * 109.46935 * 67.97333 * 5 4 2 8 8 C 1.52994 * 109.47504 * 307.97124 * 5 4 2 9 9 N 1.46509 * 109.47149 * 179.97438 * 8 5 4 10 10 C 1.38816 * 119.99837 * 180.02562 * 9 8 5 11 11 C 1.39799 * 119.58548 * 359.97438 * 10 9 8 12 12 C 1.38597 * 119.48703 * 180.02562 * 11 10 9 13 13 C 1.38389 * 118.68197 * 0.02562 * 12 11 10 14 14 C 1.40548 * 119.15021 * 359.97438 * 13 12 11 15 15 C 1.41320 * 119.78419 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99929 * 6.43163 * 15 14 13 17 17 C 1.40018 * 120.00027 * 186.43295 * 15 14 13 18 18 N 1.30753 * 119.99834 * 182.39696 * 17 15 14 19 19 Si 1.86797 * 120.00215 * 2.12098 * 17 15 14 20 20 H 1.48496 * 109.47580 * 180.27709 * 19 17 15 21 21 H 1.48507 * 109.47089 * 300.27527 * 19 17 15 22 22 H 1.48497 * 109.47203 * 60.27343 * 19 17 15 23 23 N 1.31957 * 119.58462 * 180.30233 * 10 9 8 24 24 H 1.09004 * 109.47003 * 296.04999 * 1 2 3 25 25 H 1.08997 * 109.46817 * 56.04625 * 1 2 3 26 26 H 1.08999 * 109.47105 * 176.05196 * 1 2 3 27 27 H 1.08999 * 109.47327 * 223.04606 * 3 2 1 28 28 H 1.09007 * 109.46829 * 343.04310 * 3 2 1 29 29 H 1.08995 * 109.47427 * 103.04230 * 3 2 1 30 30 H 1.08999 * 109.46455 * 36.91870 * 4 2 1 31 31 H 1.08998 * 109.47040 * 276.92352 * 4 2 1 32 32 H 1.09005 * 109.46770 * 176.85059 * 6 5 4 33 33 H 1.08998 * 109.47144 * 296.84997 * 6 5 4 34 34 H 1.09002 * 109.46824 * 56.85599 * 6 5 4 35 35 H 1.08995 * 109.46962 * 292.59926 * 7 5 4 36 36 H 1.08999 * 109.46800 * 52.59752 * 7 5 4 37 37 H 1.09002 * 109.46956 * 172.59143 * 7 5 4 38 38 H 1.09006 * 109.46917 * 60.00396 * 8 5 4 39 39 H 1.08995 * 109.47515 * 300.00081 * 8 5 4 40 40 H 0.96995 * 119.99506 * 0.02562 * 9 8 5 41 41 H 1.07992 * 120.25503 * 0.05064 * 11 10 9 42 42 H 1.08002 * 120.65680 * 179.97438 * 12 11 10 43 43 H 1.08002 * 120.42276 * 180.02562 * 13 12 11 44 44 H 0.96995 * 119.99663 * 354.59183 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1377 5 6 3.4171 -1.2354 0.8222 6 6 3.8915 -2.1953 1.9152 7 6 4.3525 -0.0260 0.7644 8 6 3.4290 -1.9544 -0.5282 9 7 4.7904 -2.4033 -0.8305 10 6 5.0504 -3.0845 -2.0118 11 6 4.0065 -3.3379 -2.9065 12 6 4.2683 -4.0186 -4.0851 13 6 5.5647 -4.4297 -4.3408 14 6 6.5710 -4.1449 -3.4018 15 6 7.8994 -4.5589 -3.6491 16 1 8.1596 -4.9991 -4.6004 17 6 8.8781 -4.3986 -2.6607 18 7 10.1167 -4.7383 -2.9060 19 14 8.4160 -3.6921 -0.9944 20 1 9.6248 -3.6192 -0.1350 21 1 7.8530 -2.3296 -1.1733 22 1 7.4026 -4.5657 -0.3502 23 7 6.2785 -3.4904 -2.2730 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 2.8269 1.4415 -0.7015 28 1 1.2080 2.0629 -0.2997 29 1 2.3422 1.6275 1.0011 30 1 1.3586 -1.6319 1.3184 31 1 2.0101 -0.1340 2.0256 32 1 4.8821 -2.5731 1.6620 33 1 3.9366 -1.6674 2.8678 34 1 3.1939 -3.0291 1.9944 35 1 4.0951 0.5916 -0.0960 36 1 4.2455 0.5600 1.6773 37 1 5.3833 -0.3680 0.6710 38 1 3.0910 -1.2705 -1.3069 39 1 2.7626 -2.8159 -0.4871 40 1 5.5100 -2.2246 -0.2052 41 1 3.0040 -3.0054 -2.6813 42 1 3.4760 -4.2248 -4.7895 43 1 5.8003 -4.9618 -5.2506 44 1 10.3436 -5.1734 -3.7427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168767926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:32 Heat of formation + Delta-G solvation = 24.659448 kcal Electronic energy + Delta-G solvation = -22231.278645 eV Core-core repulsion = 19182.855463 eV Total energy + Delta-G solvation = -3048.423182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.38081 -38.38698 -35.96906 -33.94567 -32.87516 -30.98348 -29.01799 -28.48568 -27.23269 -26.61610 -25.29265 -25.13300 -22.20910 -21.71169 -20.36358 -18.90081 -18.12770 -16.70704 -15.93249 -15.59816 -15.12971 -14.91702 -14.39198 -14.26511 -13.93911 -13.60254 -13.52452 -13.15725 -12.90609 -12.79435 -12.59612 -12.43090 -12.22739 -12.05243 -11.85272 -11.73521 -11.66219 -11.43631 -10.77915 -10.65835 -10.61316 -10.53010 -10.36933 -10.15613 -9.47737 -9.42178 -8.86863 -8.47108 -8.33264 -7.56485 -7.09943 -6.71415 -4.66521 2.79190 2.94734 3.65297 3.75809 3.77436 3.98809 4.16045 4.53806 4.70390 4.78011 4.79334 4.87927 5.01240 5.12856 5.19793 5.32897 5.41664 5.50924 5.55114 5.65053 5.67513 5.70456 5.71647 5.82569 5.92183 5.98511 6.01737 6.15323 6.22068 6.30237 6.44281 6.49138 6.63094 6.73105 6.77556 6.85106 6.87563 7.38607 7.55164 7.59752 7.73744 8.02280 8.14708 8.43097 8.60025 8.86029 9.72097 10.12086 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.005054 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.668104 B = 5538.942624 C = 6330.867107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.019 3.981 4 C 0.069 3.931 5 C -0.070 4.070 6 C -0.144 4.144 7 C -0.150 4.150 8 C 0.159 3.841 9 N -0.740 5.740 10 C 0.443 3.557 11 C -0.362 4.362 12 C -0.017 4.017 13 C -0.310 4.310 14 C 0.288 3.712 15 C -0.479 4.479 16 H 0.080 0.920 17 C 0.045 3.955 18 N -0.812 5.812 19 Si 1.160 2.840 20 H -0.339 1.339 21 H -0.283 1.283 22 H -0.295 1.295 23 N -0.622 5.622 24 H 0.021 0.979 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.391 0.609 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 9.601 9.239 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.129 4.129 4 C -0.060 4.060 5 C -0.071 4.071 6 C -0.202 4.202 7 C -0.207 4.207 8 C 0.034 3.966 9 N -0.376 5.376 10 C 0.206 3.794 11 C -0.387 4.387 12 C -0.041 4.041 13 C -0.332 4.332 14 C 0.164 3.836 15 C -0.511 4.511 16 H 0.098 0.902 17 C -0.176 4.176 18 N -0.434 5.434 19 Si 0.997 3.003 20 H -0.274 1.274 21 H -0.211 1.211 22 H -0.223 1.223 23 N -0.351 5.351 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.227 0.773 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.564 9.970 10.643 20.610 hybrid contribution -1.323 -0.337 -1.408 1.962 sum -15.887 9.633 9.234 20.748 Atomic orbital electron populations 1.22460 0.87400 1.02295 1.00100 1.61935 1.07519 1.13936 1.43300 1.22744 1.00523 0.88527 1.01071 1.22271 0.95287 0.97596 0.90814 1.20762 0.94671 0.95904 0.95803 1.21878 1.02099 0.98722 0.97476 1.22154 0.99448 0.97325 1.01786 1.21063 0.83252 0.97224 0.95049 1.44431 1.09293 1.63192 1.20715 1.18093 0.89296 0.87069 0.84968 1.20501 0.97808 1.20259 1.00172 1.20709 0.95510 0.93289 0.94615 1.21369 0.93706 1.14835 1.03330 1.18260 0.93485 0.86019 0.85843 1.20726 0.92919 1.35233 1.02252 0.90166 1.27786 0.91375 0.92005 1.06409 1.70658 1.18981 1.26783 1.27012 0.81699 0.70129 0.78246 0.70217 1.27356 1.21100 1.22345 1.65908 1.18549 1.26367 1.24311 0.96009 0.91393 0.91337 0.90750 0.92857 0.94160 0.90856 0.94092 0.91808 0.92785 0.92431 0.91160 0.93226 0.92430 0.90955 0.93265 0.77328 0.88053 0.88340 0.88307 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.26 60.06 0.56 0.77 16 2 N -0.54 -5.39 3.83 -251.26 -0.96 -6.35 16 3 C 0.02 0.17 8.61 60.06 0.52 0.69 16 4 C 0.07 0.67 4.17 -3.82 -0.02 0.65 16 5 C -0.07 -0.81 0.61 -154.51 -0.09 -0.91 16 6 C -0.14 -1.62 8.33 37.16 0.31 -1.31 16 7 C -0.15 -1.72 6.97 37.16 0.26 -1.46 16 8 C 0.16 2.37 3.52 -4.04 -0.01 2.35 16 9 N -0.74 -14.03 5.14 -60.39 -0.31 -14.34 16 10 C 0.44 10.30 7.65 -155.33 -1.19 9.11 16 11 C -0.36 -7.94 9.34 -38.87 -0.36 -8.30 16 12 C -0.02 -0.38 10.15 -39.39 -0.40 -0.78 16 13 C -0.31 -7.72 9.83 -38.66 -0.38 -8.10 16 14 C 0.29 7.91 6.40 -85.00 -0.54 7.37 16 15 C -0.48 -13.68 9.58 -37.74 -0.36 -14.04 16 16 H 0.08 2.28 8.05 -52.48 -0.42 1.86 16 17 C 0.04 1.27 5.52 -17.34 -0.10 1.17 16 18 N -0.81 -23.01 13.65 55.55 0.76 -22.25 16 19 Si 1.16 29.62 25.53 -169.99 -4.34 25.28 16 20 H -0.34 -8.55 7.11 56.52 0.40 -8.15 16 21 H -0.28 -7.13 6.70 56.52 0.38 -6.75 16 22 H -0.29 -7.57 7.10 56.52 0.40 -7.17 16 23 N -0.62 -16.42 4.56 -10.33 -0.05 -16.47 16 24 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 25 H 0.07 0.52 8.01 -51.93 -0.42 0.10 16 26 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 27 H 0.07 0.74 6.27 -51.93 -0.33 0.41 16 28 H 0.05 0.41 7.54 -51.92 -0.39 0.02 16 29 H 0.04 0.33 6.67 -51.93 -0.35 -0.01 16 30 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 31 H 0.04 0.37 7.48 -51.93 -0.39 -0.02 16 32 H 0.06 0.83 6.78 -51.93 -0.35 0.47 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.82 5.09 -51.93 -0.26 0.56 16 36 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 37 H 0.06 0.74 7.08 -51.93 -0.37 0.37 16 38 H 0.07 1.14 7.18 -51.93 -0.37 0.77 16 39 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 40 H 0.39 7.36 6.34 -40.82 -0.26 7.10 16 41 H 0.10 1.98 6.68 -52.49 -0.35 1.63 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 44 H 0.28 7.62 8.72 -40.82 -0.36 7.26 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -30.38 337.68 -8.82 -39.19 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.19 Total: 2.64 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.81 Total: -12.79 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.56 Total: -59.41 kcal Atomic # 14 Polarization: 29.62 SS G_CDS: -4.34 Total: 25.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.38 -8.82 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168767926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.852 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds