Wall clock time and date at job start Mon Mar 30 2020 01:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00317 * 2 1 4 4 C 1.46909 * 111.00127 * 123.95133 * 2 1 3 5 5 C 1.52996 * 109.47013 * 156.91465 * 4 2 1 6 6 C 1.53004 * 109.46949 * 187.96811 * 5 4 2 7 7 C 1.53009 * 109.46935 * 67.97333 * 5 4 2 8 8 C 1.52994 * 109.47504 * 307.97124 * 5 4 2 9 9 N 1.46509 * 109.47149 * 179.97438 * 8 5 4 10 10 C 1.38816 * 119.99837 * 180.02562 * 9 8 5 11 11 C 1.39799 * 119.58548 * 359.97438 * 10 9 8 12 12 C 1.38597 * 119.48703 * 180.02562 * 11 10 9 13 13 C 1.38389 * 118.68197 * 0.02562 * 12 11 10 14 14 C 1.40548 * 119.15021 * 359.97438 * 13 12 11 15 15 C 1.41320 * 119.78419 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99929 * 6.43163 * 15 14 13 17 17 C 1.40018 * 120.00027 * 186.43295 * 15 14 13 18 18 N 1.30753 * 119.99834 * 182.39696 * 17 15 14 19 19 Si 1.86797 * 120.00215 * 2.12098 * 17 15 14 20 20 H 1.48496 * 109.47580 * 180.27709 * 19 17 15 21 21 H 1.48507 * 109.47089 * 300.27527 * 19 17 15 22 22 H 1.48497 * 109.47203 * 60.27343 * 19 17 15 23 23 N 1.31957 * 119.58462 * 180.30233 * 10 9 8 24 24 H 1.09004 * 109.47003 * 296.04999 * 1 2 3 25 25 H 1.08997 * 109.46817 * 56.04625 * 1 2 3 26 26 H 1.08999 * 109.47105 * 176.05196 * 1 2 3 27 27 H 1.08999 * 109.47327 * 223.04606 * 3 2 1 28 28 H 1.09007 * 109.46829 * 343.04310 * 3 2 1 29 29 H 1.08995 * 109.47427 * 103.04230 * 3 2 1 30 30 H 1.08999 * 109.46455 * 36.91870 * 4 2 1 31 31 H 1.08998 * 109.47040 * 276.92352 * 4 2 1 32 32 H 1.09005 * 109.46770 * 176.85059 * 6 5 4 33 33 H 1.08998 * 109.47144 * 296.84997 * 6 5 4 34 34 H 1.09002 * 109.46824 * 56.85599 * 6 5 4 35 35 H 1.08995 * 109.46962 * 292.59926 * 7 5 4 36 36 H 1.08999 * 109.46800 * 52.59752 * 7 5 4 37 37 H 1.09002 * 109.46956 * 172.59143 * 7 5 4 38 38 H 1.09006 * 109.46917 * 60.00396 * 8 5 4 39 39 H 1.08995 * 109.47515 * 300.00081 * 8 5 4 40 40 H 0.96995 * 119.99506 * 0.02562 * 9 8 5 41 41 H 1.07992 * 120.25503 * 0.05064 * 11 10 9 42 42 H 1.08002 * 120.65680 * 179.97438 * 12 11 10 43 43 H 1.08002 * 120.42276 * 180.02562 * 13 12 11 44 44 H 0.96995 * 119.99663 * 354.59183 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1377 5 6 3.4171 -1.2354 0.8222 6 6 3.8915 -2.1953 1.9152 7 6 4.3525 -0.0260 0.7644 8 6 3.4290 -1.9544 -0.5282 9 7 4.7904 -2.4033 -0.8305 10 6 5.0504 -3.0845 -2.0118 11 6 4.0065 -3.3379 -2.9065 12 6 4.2683 -4.0186 -4.0851 13 6 5.5647 -4.4297 -4.3408 14 6 6.5710 -4.1449 -3.4018 15 6 7.8994 -4.5589 -3.6491 16 1 8.1596 -4.9991 -4.6004 17 6 8.8781 -4.3986 -2.6607 18 7 10.1167 -4.7383 -2.9060 19 14 8.4160 -3.6921 -0.9944 20 1 9.6248 -3.6192 -0.1350 21 1 7.8530 -2.3296 -1.1733 22 1 7.4026 -4.5657 -0.3502 23 7 6.2785 -3.4904 -2.2730 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 2.8269 1.4415 -0.7015 28 1 1.2080 2.0629 -0.2997 29 1 2.3422 1.6275 1.0011 30 1 1.3586 -1.6319 1.3184 31 1 2.0101 -0.1340 2.0256 32 1 4.8821 -2.5731 1.6620 33 1 3.9366 -1.6674 2.8678 34 1 3.1939 -3.0291 1.9944 35 1 4.0951 0.5916 -0.0960 36 1 4.2455 0.5600 1.6773 37 1 5.3833 -0.3680 0.6710 38 1 3.0910 -1.2705 -1.3069 39 1 2.7626 -2.8159 -0.4871 40 1 5.5100 -2.2246 -0.2052 41 1 3.0040 -3.0054 -2.6813 42 1 3.4760 -4.2248 -4.7895 43 1 5.8003 -4.9618 -5.2506 44 1 10.3436 -5.1734 -3.7427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168767926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:31 Heat of formation + Delta-G solvation = 6.712468 kcal Electronic energy + Delta-G solvation = -22232.056885 eV Core-core repulsion = 19182.855463 eV Total energy + Delta-G solvation = -3049.201422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74541 -39.79644 -37.12657 -35.73135 -34.43327 -32.89609 -30.80113 -29.24004 -28.02063 -27.41657 -27.11348 -26.56716 -23.62898 -22.92984 -22.12340 -20.44524 -19.71704 -18.25725 -17.26392 -16.59444 -16.34961 -16.27824 -15.79482 -15.66518 -15.47185 -15.09112 -14.83550 -14.48147 -14.17070 -14.11229 -13.99042 -13.59160 -13.47175 -13.31472 -13.17765 -12.82247 -12.56104 -12.46622 -12.39056 -12.18297 -12.15601 -11.64476 -11.55967 -11.53903 -11.38096 -11.32387 -10.70604 -10.25524 -9.61734 -9.17577 -9.15264 -8.47286 -6.76992 0.82701 1.06390 1.57034 1.73838 2.03549 2.48796 2.55362 2.73350 3.07589 3.70016 3.79479 3.90989 3.99129 4.22514 4.33282 4.39053 4.50992 4.55826 4.59453 4.66746 4.72895 4.78945 4.81871 4.82658 4.84907 4.89038 4.92797 4.93442 5.03203 5.09920 5.12162 5.19506 5.23101 5.38142 5.42048 5.52013 5.52798 5.74021 5.89368 6.00717 6.17444 6.19604 6.24620 6.61818 6.65781 6.96509 7.77761 8.00182 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.005054 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.668104 B = 5538.942624 C = 6330.867107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.562 5.562 3 C 0.020 3.980 4 C 0.075 3.925 5 C -0.064 4.064 6 C -0.143 4.143 7 C -0.148 4.148 8 C 0.159 3.841 9 N -0.732 5.732 10 C 0.425 3.575 11 C -0.344 4.344 12 C -0.008 4.008 13 C -0.333 4.333 14 C 0.273 3.727 15 C -0.516 4.516 16 H 0.063 0.937 17 C 0.016 3.984 18 N -0.837 5.837 19 Si 1.198 2.802 20 H -0.336 1.336 21 H -0.282 1.282 22 H -0.300 1.300 23 N -0.642 5.642 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.392 0.608 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.102 0.898 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.166 10.960 10.688 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.128 4.128 4 C -0.054 4.054 5 C -0.065 4.065 6 C -0.201 4.201 7 C -0.205 4.205 8 C 0.036 3.964 9 N -0.366 5.366 10 C 0.187 3.813 11 C -0.369 4.369 12 C -0.032 4.032 13 C -0.356 4.356 14 C 0.147 3.853 15 C -0.549 4.549 16 H 0.081 0.919 17 C -0.199 4.199 18 N -0.461 5.461 19 Si 1.033 2.967 20 H -0.271 1.271 21 H -0.210 1.210 22 H -0.229 1.229 23 N -0.372 5.372 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.227 0.773 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.120 0.880 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.919 11.353 12.111 24.426 hybrid contribution -0.580 -0.676 -1.860 2.062 sum -18.499 10.677 10.251 23.691 Atomic orbital electron populations 1.22466 0.86279 1.02583 1.00783 1.61889 1.08655 1.14439 1.43570 1.22711 1.00440 0.88449 1.01155 1.22199 0.93749 0.98146 0.91284 1.20729 0.96281 0.95554 0.93897 1.21868 1.00879 0.99024 0.98307 1.22145 0.98190 0.97460 1.02747 1.21262 0.80849 0.97359 0.96973 1.44677 1.11073 1.61728 1.19148 1.18558 0.88830 0.87267 0.86630 1.20947 0.98805 1.17993 0.99195 1.21153 0.95347 0.91526 0.95201 1.21509 0.94621 1.16081 1.03395 1.18414 0.93643 0.86259 0.86952 1.20715 0.94300 1.37785 1.02104 0.91892 1.28501 0.91342 0.92045 1.08042 1.70673 1.19278 1.28853 1.27300 0.81182 0.69668 0.77637 0.68261 1.27095 1.21046 1.22856 1.65821 1.20427 1.26782 1.24191 0.94996 0.91098 0.91212 0.92119 0.91833 0.93424 0.90158 0.92668 0.93977 0.90733 0.91969 0.91503 0.91182 0.94370 0.91343 0.93017 0.77317 0.84894 0.84131 0.87953 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.26 127.69 1.18 1.53 16 2 N -0.56 -9.32 3.83 -948.83 -3.63 -12.95 16 3 C 0.02 0.30 8.61 127.69 1.10 1.40 16 4 C 0.07 1.17 4.17 86.30 0.36 1.53 16 5 C -0.06 -1.29 0.61 -52.18 -0.03 -1.32 16 6 C -0.14 -2.83 8.33 71.98 0.60 -2.23 16 7 C -0.15 -3.05 6.97 71.99 0.50 -2.55 16 8 C 0.16 4.29 3.52 86.38 0.30 4.59 16 9 N -0.73 -26.41 5.14 -344.98 -1.77 -28.18 16 10 C 0.43 19.02 7.65 133.42 1.02 20.04 16 11 C -0.34 -13.97 9.34 22.73 0.21 -13.76 16 12 C -0.01 -0.34 10.15 22.39 0.23 -0.12 16 13 C -0.33 -16.38 9.83 22.87 0.22 -16.16 16 14 C 0.27 15.14 6.40 40.18 0.26 15.40 16 15 C -0.52 -30.62 9.58 23.46 0.22 -30.39 16 16 H 0.06 3.80 8.05 -2.91 -0.02 3.78 16 17 C 0.02 0.95 5.52 85.29 0.47 1.42 16 18 N -0.84 -49.16 13.65 21.84 0.30 -48.86 16 19 Si 1.20 61.48 25.53 68.60 1.75 63.23 16 20 H -0.34 -16.85 7.11 99.48 0.71 -16.14 16 21 H -0.28 -14.22 6.70 99.48 0.67 -13.55 16 22 H -0.30 -15.38 7.10 99.48 0.71 -14.67 16 23 N -0.64 -33.69 4.56 -186.60 -0.85 -34.54 16 24 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.87 8.01 -2.39 -0.02 0.85 16 26 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 27 H 0.06 1.08 6.27 -2.39 -0.01 1.06 16 28 H 0.06 0.81 7.54 -2.38 -0.02 0.79 16 29 H 0.05 0.64 6.67 -2.39 -0.02 0.62 16 30 H 0.08 1.17 7.82 -2.39 -0.02 1.15 16 31 H 0.06 0.75 7.48 -2.39 -0.02 0.73 16 32 H 0.04 1.02 6.78 -2.38 -0.02 1.00 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.43 5.09 -2.39 -0.01 1.42 16 36 H 0.07 1.15 7.90 -2.39 -0.02 1.13 16 37 H 0.04 0.93 7.08 -2.39 -0.02 0.91 16 38 H 0.07 1.95 7.18 -2.38 -0.02 1.93 16 39 H 0.05 1.40 7.92 -2.39 -0.02 1.38 16 40 H 0.39 14.27 6.34 -92.71 -0.59 13.68 16 41 H 0.13 4.57 6.68 -2.91 -0.02 4.55 16 42 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 44 H 0.28 15.86 8.72 -92.71 -0.81 15.05 16 Total: -1.00 -66.08 337.68 2.76 -63.32 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.31 Total: 18.57 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 6.65 Total: -20.60 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -5.95 Total: -124.52 kcal Atomic # 14 Polarization: 61.48 SS G_CDS: 1.75 Total: 63.23 kcal Total: -66.08 2.76 -63.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168767926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.034 kcal (2) G-P(sol) polarization free energy of solvation -66.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds