Wall clock time and date at job start Mon Mar 30 2020 01:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 C 1.53008 * 109.47245 * 240.00256 * 2 1 3 5 5 C 1.53001 * 109.47542 * 120.00056 * 2 1 3 6 6 C 1.53003 * 109.46875 * 80.02767 * 5 2 1 7 7 C 1.52991 * 109.47195 * 76.40986 * 6 5 2 8 8 C 1.52999 * 109.46998 * 196.41036 * 6 5 2 9 9 N 1.46509 * 109.47153 * 316.41039 * 6 5 2 10 10 C 1.37940 * 119.99832 * 180.55126 * 9 6 5 11 11 N 1.32614 * 120.23555 * 359.71522 * 10 9 6 12 12 C 1.32240 * 120.08351 * 179.76830 * 11 10 9 13 13 C 1.38969 * 120.56959 * 0.52266 * 12 11 10 14 14 N 1.31712 * 120.47608 * 359.73413 * 13 12 11 15 15 C 1.33914 * 119.89519 * 0.02562 * 14 13 12 16 16 C 1.40821 * 120.28021 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99938 * 179.97438 * 16 15 14 18 18 C 1.40114 * 119.99783 * 359.97438 * 16 15 14 19 19 N 1.30737 * 120.00453 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99897 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47114 * 59.99992 * 20 18 16 22 22 H 1.48504 * 109.47091 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47076 * 299.99581 * 20 18 16 24 24 H 1.09000 * 109.46937 * 262.14726 * 1 2 3 25 25 H 1.08996 * 109.47165 * 22.14827 * 1 2 3 26 26 H 1.08999 * 109.47108 * 142.15072 * 1 2 3 27 27 H 1.09001 * 109.47146 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47145 * 300.00233 * 3 2 1 29 29 H 1.09003 * 109.46884 * 60.00061 * 3 2 1 30 30 H 1.09003 * 109.46716 * 326.30299 * 4 2 1 31 31 H 1.09000 * 109.46725 * 86.29972 * 4 2 1 32 32 H 1.08995 * 109.46923 * 206.30115 * 4 2 1 33 33 H 1.09001 * 109.46971 * 320.03219 * 5 2 1 34 34 H 1.08994 * 109.47417 * 200.02577 * 5 2 1 35 35 H 1.08998 * 109.47526 * 142.21507 * 7 6 5 36 36 H 1.09002 * 109.47336 * 262.21758 * 7 6 5 37 37 H 1.09000 * 109.47127 * 22.21462 * 7 6 5 38 38 H 1.08992 * 109.47200 * 305.02643 * 8 6 5 39 39 H 1.09000 * 109.47187 * 65.02582 * 8 6 5 40 40 H 1.09006 * 109.47120 * 185.02267 * 8 6 5 41 41 H 0.96996 * 119.99762 * 0.54324 * 9 6 5 42 42 H 1.08006 * 119.71880 * 180.27939 * 12 11 10 43 43 H 1.07999 * 119.76356 * 179.76542 * 13 12 11 44 44 H 0.96991 * 120.00371 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.9746 -2.2337 1.0273 7 6 3.1296 -2.6669 0.1224 8 6 2.0846 -2.9519 2.3738 9 7 0.7004 -2.5794 0.3921 10 6 0.4089 -3.8962 0.1028 11 7 1.2809 -4.8524 0.3925 12 6 0.9964 -6.1143 0.1180 13 6 -0.2095 -6.4520 -0.4845 14 7 -1.0896 -5.5198 -0.7864 15 6 -0.8229 -4.2364 -0.5125 16 6 -1.7583 -3.2331 -0.8313 17 1 -1.5387 -2.1995 -0.6080 18 6 -2.9737 -3.5759 -1.4382 19 7 -3.2393 -4.8270 -1.7090 20 14 -4.2148 -2.2451 -1.8605 21 1 -3.6015 -1.2784 -2.8064 22 1 -5.4088 -2.8638 -2.4905 23 1 -4.6205 -1.5353 -0.6209 24 1 -0.3633 -0.1404 1.0180 25 1 -0.3633 0.9518 -0.3874 26 1 -0.3633 -0.8115 -0.6306 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.3550 -1.5288 -1.5077 31 1 2.0986 -0.0153 -2.0778 32 1 3.0297 -1.1333 -1.0523 33 1 1.4187 -0.4521 2.1033 34 1 3.0715 -0.4268 1.4431 35 1 3.5134 -3.6300 0.4588 36 1 2.7734 -2.7561 -0.9039 37 1 3.9251 -1.9230 0.1674 38 1 2.9897 -2.6263 2.8863 39 1 1.2147 -2.7126 2.9853 40 1 2.1278 -4.0285 2.2088 41 1 0.0619 -1.8822 0.1751 42 1 1.7090 -6.8888 0.3606 43 1 -0.4268 -7.4864 -0.7063 44 1 -4.0805 -5.0642 -2.1295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169048081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:06 Heat of formation + Delta-G solvation = 68.451429 kcal Electronic energy + Delta-G solvation = -23465.742012 eV Core-core repulsion = 20419.217793 eV Total energy + Delta-G solvation = -3046.524219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92234 -38.33415 -34.79596 -33.90078 -32.03731 -31.34185 -28.50547 -28.21183 -27.16340 -26.31874 -25.67796 -25.42742 -22.26595 -21.50440 -19.14305 -18.75199 -17.53766 -16.61425 -15.81249 -15.06496 -14.61001 -14.34930 -14.13652 -13.90452 -13.56441 -13.36875 -13.10732 -12.84652 -12.65412 -12.30739 -11.98462 -11.80961 -11.56023 -11.38627 -11.36003 -11.29329 -11.13351 -11.05532 -10.93237 -10.59684 -10.44093 -10.33082 -10.13915 -10.11470 -9.73852 -9.54211 -9.26900 -9.15578 -8.45596 -7.24801 -6.67316 -6.35061 -4.35726 2.72396 3.05461 3.06335 3.11906 3.32476 3.90986 4.43559 4.78626 4.94364 4.96583 5.03616 5.43903 5.54009 5.69102 5.74081 5.84047 5.86802 5.94569 5.96316 5.99512 6.03444 6.08612 6.14395 6.18188 6.20192 6.29833 6.36234 6.40963 6.42819 6.50232 6.53553 6.62153 6.69433 6.79214 6.85415 7.00147 7.06183 7.10052 7.15850 7.74090 8.05303 8.25037 8.54804 8.70393 8.98739 9.57950 10.07948 10.29531 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.008462 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.150741 B = 3308.146129 C = 4816.849043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.168 4.168 5 C -0.111 4.111 6 C 0.192 3.808 7 C -0.149 4.149 8 C -0.158 4.158 9 N -0.722 5.722 10 C 0.268 3.732 11 N -0.493 5.493 12 C -0.084 4.084 13 C 0.023 3.977 14 N -0.448 5.448 15 C 0.192 3.808 16 C -0.429 4.429 17 H 0.080 0.920 18 C 0.071 3.929 19 N -0.715 5.715 20 Si 0.899 3.101 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.264 1.264 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.408 0.592 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 8.936 2.621 11.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.067 4.067 3 C -0.194 4.194 4 C -0.225 4.225 5 C -0.149 4.149 6 C 0.104 3.896 7 C -0.208 4.208 8 C -0.217 4.217 9 N -0.373 5.373 10 C 0.021 3.979 11 N -0.214 5.214 12 C -0.238 4.238 13 C -0.140 4.140 14 N -0.166 5.166 15 C 0.057 3.943 16 C -0.464 4.464 17 H 0.098 0.902 18 C -0.155 4.155 19 N -0.338 5.338 20 Si 0.723 3.277 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.189 1.189 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.256 0.744 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.585 8.617 2.576 11.146 hybrid contribution -0.825 0.643 -0.217 1.069 sum 5.760 9.260 2.359 11.157 Atomic orbital electron populations 1.22462 0.95032 1.02354 1.02558 1.20490 0.95339 0.94881 0.95945 1.21946 1.00567 0.95676 1.01260 1.22808 1.03483 1.00459 0.95720 1.22154 1.01243 0.94492 0.97017 1.19855 0.85565 0.91872 0.92282 1.22591 0.96893 1.00409 1.00859 1.22284 0.99529 1.03849 0.96022 1.45042 1.19478 1.04512 1.68258 1.19387 0.92614 0.86014 0.99870 1.67412 1.32071 1.00303 1.21628 1.22304 0.98808 0.92528 1.10193 1.23098 0.92499 0.99077 0.99288 1.69469 1.28562 0.98826 1.19720 1.19031 0.90224 0.91770 0.93256 1.19216 0.99559 0.93501 1.34104 0.90185 1.25962 0.98841 0.95888 0.94782 1.70084 1.21270 1.17308 1.25110 0.86507 0.79926 0.81501 0.79730 1.18829 1.20127 1.18861 0.92139 0.92426 0.90185 0.92987 0.92869 0.93040 0.90760 0.94148 0.90484 0.91937 0.91304 0.92248 0.91477 0.93855 0.93816 0.93865 0.89639 0.74379 0.86292 0.86197 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 7.58 37.16 0.28 -2.13 16 2 C -0.07 -0.89 0.77 -154.50 -0.12 -1.01 16 3 C -0.14 -1.52 8.01 37.16 0.30 -1.22 16 4 C -0.17 -2.47 6.86 37.16 0.25 -2.21 16 5 C -0.11 -1.53 3.96 -26.73 -0.11 -1.63 16 6 C 0.19 3.22 0.66 -131.82 -0.09 3.13 16 7 C -0.15 -2.47 6.29 37.15 0.23 -2.23 16 8 C -0.16 -2.70 8.08 37.16 0.30 -2.40 16 9 N -0.72 -14.37 3.32 -47.21 -0.16 -14.53 16 10 C 0.27 6.40 6.87 -154.82 -1.06 5.34 16 11 N -0.49 -11.51 6.48 -11.67 -0.08 -11.59 16 12 C -0.08 -1.96 11.22 -17.10 -0.19 -2.15 16 13 C 0.02 0.56 11.21 -17.33 -0.19 0.37 16 14 N -0.45 -12.38 8.03 -10.79 -0.09 -12.47 16 15 C 0.19 5.13 6.56 -84.61 -0.56 4.57 16 16 C -0.43 -10.94 8.89 -37.90 -0.34 -11.28 16 17 H 0.08 1.85 4.70 -52.49 -0.25 1.60 16 18 C 0.07 1.75 5.50 -17.31 -0.10 1.66 16 19 N -0.72 -18.87 11.48 55.56 0.64 -18.23 16 20 Si 0.90 18.09 29.56 -169.99 -5.03 13.07 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 H 0.06 0.86 7.29 -51.93 -0.38 0.48 16 25 H 0.06 0.73 7.72 -51.93 -0.40 0.33 16 26 H 0.08 1.36 3.88 -51.93 -0.20 1.15 16 27 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.31 5.48 -51.93 -0.28 1.03 16 31 H 0.04 0.54 7.87 -51.93 -0.41 0.13 16 32 H 0.08 1.10 4.18 -51.93 -0.22 0.88 16 33 H 0.06 0.84 7.47 -51.93 -0.39 0.46 16 34 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 35 H 0.06 1.06 7.21 -51.93 -0.37 0.68 16 36 H 0.07 1.22 5.63 -51.93 -0.29 0.93 16 37 H 0.04 0.60 6.57 -51.93 -0.34 0.26 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.67 5.96 -51.93 -0.31 1.36 16 41 H 0.41 7.82 1.77 -40.82 -0.07 7.75 16 42 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 43 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 44 H 0.27 6.58 8.29 -40.82 -0.34 6.25 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -28.29 320.96 -7.65 -35.93 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.40 Total: 14.16 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.38 Total: -11.19 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.32 Total: -56.82 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.29 -7.65 -35.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169048081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.385 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds