Wall clock time and date at job start Mon Mar 30 2020 02:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48716 * 110.99981 * 2 1 4 4 H 1.08999 * 112.23516 * 44.78103 * 3 2 1 5 5 C 1.54604 * 104.22531 * 282.49076 * 3 2 1 6 6 C 1.54292 * 104.84585 * 334.82353 * 5 3 2 7 7 C 1.48718 * 110.99987 * 245.53770 * 2 1 3 8 8 H 1.09004 * 112.23786 * 315.83155 * 7 2 1 9 9 C 1.53599 * 107.21786 * 191.64550 * 7 2 1 10 10 C 1.53134 * 108.94943 * 295.88763 * 9 7 2 11 11 H 1.09005 * 109.42673 * 293.97799 * 10 9 7 12 12 N 1.46894 * 109.42936 * 174.08470 * 10 9 7 13 13 C 1.46894 * 111.00316 * 183.84935 * 12 10 9 14 14 C 1.50702 * 109.47431 * 171.50846 * 13 12 10 15 15 H 1.07995 * 120.00049 * 356.06557 * 14 13 12 16 16 C 1.37881 * 120.00189 * 176.05399 * 14 13 12 17 17 N 1.31515 * 120.00068 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99897 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47482 * 89.99464 * 18 16 14 20 20 H 1.48502 * 109.47059 * 209.99677 * 18 16 14 21 21 H 1.48507 * 109.46888 * 329.99320 * 18 16 14 22 22 C 1.46898 * 111.00192 * 59.89259 * 12 10 9 23 23 C 1.52999 * 109.47137 * 60.20883 * 22 12 10 24 24 C 1.47201 * 109.47289 * 180.74949 * 23 22 12 25 25 N 7.70047 * 140.75061 * 259.76640 * 2 1 3 26 26 C 1.53136 * 109.68589 * 54.03091 * 10 9 7 27 27 H 1.08998 * 109.47019 * 60.00021 * 1 2 3 28 28 H 1.09000 * 109.46722 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46654 * 299.99294 * 1 2 3 30 30 H 1.09003 * 110.36548 * 93.66619 * 5 3 2 31 31 H 1.09008 * 110.36697 * 215.98202 * 5 3 2 32 32 H 1.09005 * 110.36490 * 241.15893 * 6 5 3 33 33 H 1.08999 * 110.36660 * 118.83431 * 6 5 3 34 34 H 1.09004 * 109.50131 * 176.06726 * 9 7 2 35 35 H 1.09001 * 109.57216 * 55.74917 * 9 7 2 36 36 H 1.09004 * 109.47224 * 291.50678 * 13 12 10 37 37 H 1.08999 * 109.47428 * 51.50679 * 13 12 10 38 38 H 0.97000 * 120.00001 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47832 * 180.20910 * 22 12 10 40 40 H 1.09007 * 109.47386 * 300.21380 * 22 12 10 41 41 H 1.09005 * 109.47251 * 300.75053 * 23 22 12 42 42 H 1.09005 * 109.46754 * 60.74786 * 23 22 12 43 43 H 1.08998 * 109.56604 * 65.83546 * 26 10 9 44 44 H 1.09005 * 109.56866 * 186.18850 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4812 2.0301 0.7107 5 6 1.8355 1.8592 -1.4632 6 6 1.8354 0.5619 -2.2983 7 6 2.0019 -0.5749 -1.2638 8 1 1.4741 -1.4817 -1.5593 9 6 3.5064 -0.8070 -1.0588 10 6 4.1937 0.5448 -0.8463 11 1 4.1260 1.1337 -1.7611 12 7 5.6067 0.3269 -0.5090 13 6 6.2783 1.5983 -0.2082 14 6 7.6577 1.3222 0.3322 15 1 7.9778 0.3047 0.5012 16 6 8.5112 2.3687 0.6107 17 7 9.7152 2.1278 1.0819 18 14 7.9574 4.1287 0.3188 19 1 7.3111 4.6546 1.5480 20 1 9.1345 4.9684 -0.0196 21 1 6.9862 4.1622 -0.8042 22 6 6.3000 -0.3929 -1.5855 23 6 6.2289 0.4268 -2.8754 24 6 6.9081 -0.3027 -3.9586 25 7 7.4322 -0.8656 -4.7946 26 6 3.5075 1.2985 0.2966 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 0.8910 2.3895 -1.5859 31 1 2.6702 2.4973 -1.7537 32 1 2.6701 0.5620 -2.9994 33 1 0.8909 0.4541 -2.8316 34 1 3.9230 -1.2938 -1.9406 35 1 3.6626 -1.4376 -0.1835 36 1 6.3570 2.1920 -1.1190 37 1 5.7002 2.1477 0.5348 38 1 10.3155 2.8640 1.2781 39 1 7.3433 -0.5442 -1.3084 40 1 5.8219 -1.3598 -1.7428 41 1 5.1854 0.5895 -3.1455 42 1 6.7186 1.3885 -2.7222 43 1 3.6638 0.7627 1.2328 44 1 3.9249 2.3024 0.3743 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169144599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:25 Heat of formation + Delta-G solvation = 46.976148 kcal Electronic energy + Delta-G solvation = -22973.147519 eV Core-core repulsion = 19925.692062 eV Total energy + Delta-G solvation = -3047.455457 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94987 -37.77014 -36.02960 -32.88303 -32.31771 -31.43493 -30.82222 -29.73316 -27.32248 -25.68756 -24.49006 -23.13159 -22.06172 -20.36980 -19.86380 -18.53088 -17.33780 -16.94222 -16.23647 -15.91125 -15.04282 -14.71715 -14.26707 -14.15615 -13.79293 -13.66266 -13.42632 -13.03737 -12.81096 -12.68242 -12.53366 -12.46774 -12.19818 -12.11430 -11.73100 -11.65613 -11.58091 -11.42019 -11.01531 -10.89716 -10.80958 -10.61218 -10.30411 -10.28584 -10.07906 -9.86871 -9.76983 -9.28474 -8.59594 -8.52162 -7.44561 -6.08444 -4.06152 3.04559 3.06979 3.24053 3.30323 3.33115 3.90727 4.24289 4.37253 4.58703 4.61988 4.79643 4.83979 5.14621 5.21363 5.24700 5.27377 5.28233 5.32161 5.36416 5.39505 5.48724 5.56923 5.67387 5.76453 5.78690 5.81092 5.85938 5.88483 5.97828 6.13811 6.18382 6.21168 6.30333 6.48739 6.57666 6.68790 6.81554 6.86750 6.91764 7.11148 7.54732 7.78719 7.85075 7.98077 8.60712 9.01481 9.52769 11.04615 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.006519 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.076889 B = 4294.338949 C = 5423.851945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.504 5.504 3 C 0.064 3.936 4 H 0.091 0.909 5 C -0.151 4.151 6 C -0.150 4.150 7 C 0.064 3.936 8 H 0.090 0.910 9 C -0.101 4.101 10 C 0.079 3.921 11 H 0.038 0.962 12 N -0.513 5.513 13 C 0.152 3.848 14 C -0.510 4.510 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.869 3.131 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.070 3.930 23 C -0.073 4.073 24 C 0.223 3.777 25 N -0.457 5.457 26 C -0.102 4.102 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.082 0.918 36 H -0.007 1.007 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.657 -1.084 -4.589 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.226 5.226 3 C -0.045 4.045 4 H 0.109 0.891 5 C -0.190 4.190 6 C -0.189 4.189 7 C -0.045 4.045 8 H 0.108 0.892 9 C -0.139 4.139 10 C -0.030 4.030 11 H 0.056 0.944 12 N -0.234 5.234 13 C 0.026 3.974 14 C -0.548 4.548 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.696 3.304 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.061 4.061 23 C -0.115 4.115 24 C -0.095 4.095 25 N -0.135 5.135 26 C -0.140 4.140 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.011 0.989 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.133 0.867 43 H 0.102 0.898 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.521 -2.439 -4.828 18.337 hybrid contribution -0.736 2.387 -1.269 2.802 sum -18.257 -0.052 -6.097 19.248 Atomic orbital electron populations 1.22453 0.88972 1.01677 1.00476 1.65475 1.07241 1.15737 1.34196 1.23109 0.96809 0.89295 0.95314 0.89130 1.22945 1.01813 0.97817 0.96415 1.22946 1.01663 0.95404 0.98907 1.23058 0.96619 0.96868 0.87956 0.89236 1.21755 0.92021 0.97752 1.02406 1.21770 0.89540 0.95256 0.96422 0.94403 1.62235 0.99778 1.24099 1.37325 1.20355 0.95462 0.86404 0.95157 1.21026 0.95669 0.95638 1.42516 0.89991 1.24890 0.94779 0.98587 0.94904 1.69886 1.07094 1.31943 1.44759 0.86969 0.78497 0.85791 0.79142 1.20123 1.21319 1.19145 1.22134 1.02387 0.95674 0.85858 1.20229 0.99617 1.00636 0.90970 1.29221 0.93194 0.93335 0.93706 1.81148 1.10019 1.10509 1.11851 1.21811 0.91637 1.00654 0.99926 0.95530 0.91677 0.91660 0.92263 0.90666 0.90872 0.92267 0.91888 0.89890 0.98930 0.94959 0.92649 0.88345 0.91304 0.88482 0.86662 0.89802 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.45 60.06 0.57 0.69 16 2 N -0.50 -5.75 5.29 -221.17 -1.17 -6.92 16 3 C 0.06 0.74 3.68 -65.49 -0.24 0.50 16 4 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 5 C -0.15 -1.56 5.33 -25.21 -0.13 -1.70 16 6 C -0.15 -1.48 5.29 -25.21 -0.13 -1.62 16 7 C 0.06 0.69 3.68 -65.55 -0.24 0.45 16 8 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 9 C -0.10 -1.25 4.45 -26.35 -0.12 -1.36 16 10 C 0.08 1.10 1.20 -67.58 -0.08 1.02 16 11 H 0.04 0.51 3.66 -51.93 -0.19 0.32 16 12 N -0.51 -8.96 4.58 -227.92 -1.04 -10.01 16 13 C 0.15 3.18 3.33 -4.98 -0.02 3.16 16 14 C -0.51 -13.22 8.92 -34.44 -0.31 -13.53 16 15 H 0.08 2.35 7.42 -52.49 -0.39 1.96 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 18 Si 0.87 20.13 27.55 -169.99 -4.68 15.44 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -5.77 6.43 56.52 0.36 -5.40 16 22 C 0.07 1.12 4.74 -3.83 -0.02 1.10 16 23 C -0.07 -1.03 5.02 -29.52 -0.15 -1.18 16 24 C 0.22 3.52 15.43 -20.76 -0.32 3.20 16 25 N -0.46 -8.20 18.54 42.15 0.78 -7.41 16 26 C -0.10 -1.44 4.34 -26.29 -0.11 -1.56 16 27 H 0.03 0.23 6.88 -51.93 -0.36 -0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.07 0.83 7.03 -51.92 -0.37 0.46 16 32 H 0.07 0.72 7.04 -51.93 -0.37 0.36 16 33 H 0.06 0.53 8.01 -51.93 -0.42 0.12 16 34 H 0.06 0.72 6.75 -51.93 -0.35 0.37 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H -0.01 -0.14 4.98 -51.93 -0.26 -0.40 16 37 H 0.03 0.69 5.53 -51.93 -0.29 0.40 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.10 1.87 6.74 -51.93 -0.35 1.52 16 40 H 0.07 0.98 6.43 -51.92 -0.33 0.64 16 41 H 0.10 1.14 6.37 -51.93 -0.33 0.81 16 42 H 0.12 1.79 6.43 -51.93 -0.33 1.45 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.07 1.02 6.53 -51.93 -0.34 0.68 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -29.12 325.87 -8.63 -37.75 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.79 Total: 0.93 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.40 Total: -9.02 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.66 Total: -50.02 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.68 Total: 15.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.12 -8.63 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169144599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.726 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds