Wall clock time and date at job start Mon Mar 30 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48721 * 110.99875 * 2 1 4 4 H 1.08993 * 112.23268 * 44.77146 * 3 2 1 5 5 C 1.54608 * 104.22161 * 282.48695 * 3 2 1 6 6 C 1.54291 * 104.84326 * 334.82232 * 5 3 2 7 7 C 1.48721 * 111.00271 * 245.53209 * 2 1 3 8 8 H 1.08996 * 112.23274 * 315.83701 * 7 2 1 9 9 C 1.53709 * 107.23556 * 191.64994 * 7 2 1 10 10 C 1.53161 * 108.98719 * 295.97969 * 9 7 2 11 11 H 1.09010 * 109.53651 * 173.97000 * 10 9 7 12 12 N 1.46901 * 109.34216 * 293.82045 * 10 9 7 13 13 C 1.46902 * 110.99799 * 301.86692 * 12 10 9 14 14 C 1.50705 * 109.46905 * 297.51996 * 13 12 10 15 15 H 1.08002 * 120.00074 * 3.61071 * 14 13 12 16 16 C 1.37878 * 120.00160 * 183.60755 * 14 13 12 17 17 N 1.31509 * 120.00331 * 184.95735 * 16 14 13 18 18 Si 1.86800 * 119.99703 * 4.95535 * 16 14 13 19 19 H 1.48496 * 109.47120 * 94.52760 * 18 16 14 20 20 H 1.48501 * 109.47204 * 214.52465 * 18 16 14 21 21 H 1.48500 * 109.47378 * 334.52924 * 18 16 14 22 22 C 1.46894 * 111.00203 * 177.91009 * 12 10 9 23 23 C 1.52991 * 109.47155 * 186.37342 * 22 12 10 24 24 C 1.47202 * 109.47423 * 174.76200 * 23 22 12 25 25 N 7.59629 * 120.66898 * 335.23854 * 2 1 3 26 26 C 1.53132 * 109.71218 * 53.83816 * 10 9 7 27 27 H 1.08998 * 109.46979 * 60.00356 * 1 2 3 28 28 H 1.09008 * 109.46956 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47261 * 300.00296 * 1 2 3 30 30 H 1.08999 * 110.36438 * 93.66762 * 5 3 2 31 31 H 1.08999 * 110.36178 * 215.98363 * 5 3 2 32 32 H 1.08995 * 110.36521 * 241.15887 * 6 5 3 33 33 H 1.08999 * 110.36267 * 118.83568 * 6 5 3 34 34 H 1.09001 * 109.57164 * 55.74167 * 9 7 2 35 35 H 1.09001 * 109.56365 * 175.97021 * 9 7 2 36 36 H 1.08997 * 109.47751 * 57.52068 * 13 12 10 37 37 H 1.08997 * 109.46781 * 177.52496 * 13 12 10 38 38 H 0.96996 * 120.00292 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.47273 * 306.37547 * 22 12 10 40 40 H 1.08998 * 109.47634 * 66.36928 * 22 12 10 41 41 H 1.08997 * 109.47098 * 294.76193 * 23 22 12 42 42 H 1.09002 * 109.47311 * 54.76002 * 23 22 12 43 43 H 1.09003 * 109.56975 * 186.28407 * 26 10 9 44 44 H 1.08995 * 109.57562 * 66.04338 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4810 2.0301 0.7106 5 6 1.8355 1.8592 -1.4632 6 6 1.8355 0.5617 -2.2983 7 6 2.0020 -0.5751 -1.2637 8 1 1.4741 -1.4818 -1.5591 9 6 3.5075 -0.8075 -1.0589 10 6 4.1958 0.5438 -0.8442 11 1 5.2440 0.3830 -0.5920 12 7 4.1072 1.3364 -2.0779 13 6 4.7233 0.6251 -3.2059 14 6 6.1901 0.4183 -2.9285 15 1 6.6095 0.7269 -1.9823 16 6 6.9967 -0.1647 -3.8827 17 7 8.2537 -0.4343 -3.6056 18 14 6.3040 -0.5719 -5.5690 19 1 6.5909 0.5449 -6.5048 20 1 6.9349 -1.8169 -6.0760 21 1 4.8354 -0.7672 -5.4670 22 6 4.7138 2.6619 -1.8967 23 6 4.4632 3.5121 -3.1437 24 6 4.9601 4.8786 -2.9139 25 7 5.3437 5.9331 -2.7366 26 6 3.5075 1.2985 0.2967 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.8911 2.3894 -1.5861 31 1 2.6702 2.4971 -1.7537 32 1 2.6702 0.5618 -2.9993 33 1 0.8910 0.4539 -2.8316 34 1 3.6639 -1.4380 -0.1835 35 1 3.9246 -1.2960 -1.9396 36 1 4.2380 -0.3424 -3.3342 37 1 4.6051 1.2144 -4.1151 38 1 8.8210 -0.8448 -4.2767 39 1 4.2692 3.1495 -1.0291 40 1 5.7871 2.5522 -1.7414 41 1 4.9860 3.0735 -3.9936 42 1 3.3938 3.5447 -3.3523 43 1 3.9248 2.3025 0.3744 44 1 3.6635 0.7647 1.2341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169144600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:27 Heat of formation + Delta-G solvation = 87.258107 kcal Electronic energy + Delta-G solvation = -23723.646163 eV Core-core repulsion = 20677.937463 eV Total energy + Delta-G solvation = -3045.708701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03343 -37.24187 -36.02610 -32.75274 -32.46093 -31.26547 -30.38961 -29.67993 -27.24235 -25.22969 -23.94792 -23.23112 -22.16912 -20.00309 -19.68706 -18.37996 -17.17801 -16.88232 -16.07516 -15.83368 -14.79648 -14.48518 -14.09381 -14.01598 -13.88836 -13.45123 -13.18317 -12.68986 -12.58764 -12.43814 -12.30556 -12.23653 -11.93527 -11.89598 -11.51322 -11.43207 -11.31219 -11.23201 -10.87721 -10.78605 -10.60214 -10.27517 -10.04137 -9.94995 -9.77159 -9.66855 -9.49850 -9.35803 -8.65550 -8.16402 -7.14319 -6.19041 -4.19349 3.02766 3.08716 3.19212 3.29205 3.30298 4.22296 4.30605 4.30809 4.87358 5.09105 5.15097 5.17179 5.35519 5.41356 5.46795 5.56353 5.63280 5.70055 5.71334 5.76186 5.81820 5.87827 5.92832 5.97988 6.07219 6.17544 6.20947 6.40126 6.49870 6.54223 6.55700 6.63021 6.65767 6.73073 6.77894 6.94116 7.03304 7.06724 7.28473 7.43413 7.50519 7.79864 7.88120 7.90276 8.34084 8.84126 9.43314 10.93645 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.008038 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.992311 B = 3482.715306 C = 4624.181630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.513 5.513 3 C 0.066 3.934 4 H 0.076 0.924 5 C -0.141 4.141 6 C -0.144 4.144 7 C 0.066 3.934 8 H 0.077 0.923 9 C -0.097 4.097 10 C 0.093 3.907 11 H 0.059 0.941 12 N -0.511 5.511 13 C 0.137 3.863 14 C -0.552 4.552 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.894 5.894 18 Si 0.871 3.129 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.049 3.951 23 C -0.029 4.029 24 C 0.221 3.779 25 N -0.459 5.459 26 C -0.107 4.107 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.763 1.029 3.657 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.236 5.236 3 C -0.043 4.043 4 H 0.094 0.906 5 C -0.180 4.180 6 C -0.182 4.182 7 C -0.043 4.043 8 H 0.095 0.905 9 C -0.135 4.135 10 C -0.016 4.016 11 H 0.076 0.924 12 N -0.235 5.235 13 C 0.011 3.989 14 C -0.590 4.590 15 H 0.094 0.906 16 C -0.128 4.128 17 N -0.532 5.532 18 Si 0.698 3.302 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.185 1.185 22 C -0.080 4.080 23 C -0.069 4.069 24 C -0.096 4.096 25 N -0.137 5.137 26 C -0.145 4.145 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.082 0.918 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.359 2.267 4.239 14.198 hybrid contribution 0.196 -0.446 -1.557 1.632 sum -13.163 1.821 2.682 13.556 Atomic orbital electron populations 1.22376 0.89588 1.01151 1.00156 1.65483 1.06822 1.16024 1.35250 1.22949 0.95443 0.89202 0.96689 0.90603 1.23197 1.00983 0.99294 0.94488 1.23212 1.01382 0.93864 0.99753 1.22986 0.95870 0.97070 0.88358 0.90499 1.21713 0.93048 0.96534 1.02243 1.21421 0.98411 0.92622 0.89098 0.92352 1.63591 1.52120 1.02158 1.05658 1.20439 0.93988 0.94499 0.89935 1.21587 0.92507 1.41335 1.03571 0.90608 1.24954 0.94647 0.94697 0.98497 1.69921 1.06305 1.42272 1.34673 0.86924 0.80030 0.78256 0.84985 1.20329 1.21359 1.18535 1.21986 1.00193 0.90965 0.94856 1.19422 1.02505 0.82890 1.02113 1.29373 0.92706 0.94889 0.92645 1.81152 1.10007 1.13155 1.09352 1.21876 0.94118 1.00138 0.98346 0.95436 0.92175 0.92311 0.95195 0.86988 0.86404 0.95201 0.91898 0.90250 0.94339 0.95337 0.92643 0.91165 0.92122 0.86594 0.87366 0.91779 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.45 60.06 0.57 0.76 16 2 N -0.51 -6.94 5.29 -221.10 -1.17 -8.11 16 3 C 0.07 0.86 3.68 -65.49 -0.24 0.62 16 4 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 5 C -0.14 -1.84 5.27 -25.21 -0.13 -1.97 16 6 C -0.14 -2.01 5.23 -25.21 -0.13 -2.14 16 7 C 0.07 0.93 3.68 -65.49 -0.24 0.69 16 8 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 9 C -0.10 -1.54 5.16 -26.28 -0.14 -1.68 16 10 C 0.09 1.49 1.97 -67.56 -0.13 1.36 16 11 H 0.06 1.12 6.60 -51.92 -0.34 0.78 16 12 N -0.51 -8.00 0.54 -227.90 -0.12 -8.12 16 13 C 0.14 2.62 2.05 -4.97 -0.01 2.61 16 14 C -0.55 -13.17 8.12 -34.44 -0.28 -13.45 16 15 H 0.08 2.02 6.08 -52.49 -0.32 1.70 16 16 C 0.08 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 18 Si 0.87 19.33 27.44 -169.99 -4.66 14.67 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.26 -5.40 6.62 56.52 0.37 -5.03 16 22 C 0.05 0.73 3.25 -3.83 -0.01 0.72 16 23 C -0.03 -0.39 5.22 -29.52 -0.15 -0.54 16 24 C 0.22 3.34 15.43 -20.76 -0.32 3.02 16 25 N -0.46 -8.01 18.54 42.15 0.78 -7.22 16 26 C -0.11 -1.48 5.16 -26.29 -0.14 -1.62 16 27 H 0.03 0.32 6.88 -51.93 -0.36 -0.04 16 28 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.11 1.46 2.65 -51.93 -0.14 1.33 16 32 H 0.12 1.82 3.57 -51.93 -0.19 1.64 16 33 H 0.03 0.40 8.01 -51.93 -0.42 -0.01 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.39 6.00 -51.93 -0.31 1.08 16 36 H 0.04 0.77 4.86 -51.93 -0.25 0.51 16 37 H 0.03 0.53 5.48 -51.93 -0.28 0.25 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.07 0.94 5.24 -51.93 -0.27 0.67 16 40 H 0.06 1.09 6.56 -51.93 -0.34 0.75 16 41 H 0.12 1.65 6.70 -51.93 -0.35 1.31 16 42 H 0.11 1.18 7.35 -51.93 -0.38 0.80 16 43 H 0.06 0.85 5.91 -51.93 -0.31 0.54 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 312.79 15.07 4.71 4.71 Total: -1.00 -27.23 312.79 -7.52 -34.74 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.37 Total: 3.73 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.46 Total: -9.77 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.26 Total: -48.09 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.66 Total: 14.67 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.23 -7.52 -34.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169144600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.003 kcal (2) G-P(sol) polarization free energy of solvation -27.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds