Wall clock time and date at job start Mon Mar 30 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48721 * 110.99875 * 2 1 4 4 H 1.08993 * 112.23268 * 44.77146 * 3 2 1 5 5 C 1.54608 * 104.22161 * 282.48695 * 3 2 1 6 6 C 1.54291 * 104.84326 * 334.82232 * 5 3 2 7 7 C 1.48721 * 111.00271 * 245.53209 * 2 1 3 8 8 H 1.08996 * 112.23274 * 315.83701 * 7 2 1 9 9 C 1.53709 * 107.23556 * 191.64994 * 7 2 1 10 10 C 1.53161 * 108.98719 * 295.97969 * 9 7 2 11 11 H 1.09010 * 109.53651 * 173.97000 * 10 9 7 12 12 N 1.46901 * 109.34216 * 293.82045 * 10 9 7 13 13 C 1.46902 * 110.99799 * 301.86692 * 12 10 9 14 14 C 1.50705 * 109.46905 * 297.51996 * 13 12 10 15 15 H 1.08002 * 120.00074 * 3.61071 * 14 13 12 16 16 C 1.37878 * 120.00160 * 183.60755 * 14 13 12 17 17 N 1.31509 * 120.00331 * 184.95735 * 16 14 13 18 18 Si 1.86800 * 119.99703 * 4.95535 * 16 14 13 19 19 H 1.48496 * 109.47120 * 94.52760 * 18 16 14 20 20 H 1.48501 * 109.47204 * 214.52465 * 18 16 14 21 21 H 1.48500 * 109.47378 * 334.52924 * 18 16 14 22 22 C 1.46894 * 111.00203 * 177.91009 * 12 10 9 23 23 C 1.52991 * 109.47155 * 186.37342 * 22 12 10 24 24 C 1.47202 * 109.47423 * 174.76200 * 23 22 12 25 25 N 7.59629 * 120.66898 * 335.23854 * 2 1 3 26 26 C 1.53132 * 109.71218 * 53.83816 * 10 9 7 27 27 H 1.08998 * 109.46979 * 60.00356 * 1 2 3 28 28 H 1.09008 * 109.46956 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47261 * 300.00296 * 1 2 3 30 30 H 1.08999 * 110.36438 * 93.66762 * 5 3 2 31 31 H 1.08999 * 110.36178 * 215.98363 * 5 3 2 32 32 H 1.08995 * 110.36521 * 241.15887 * 6 5 3 33 33 H 1.08999 * 110.36267 * 118.83568 * 6 5 3 34 34 H 1.09001 * 109.57164 * 55.74167 * 9 7 2 35 35 H 1.09001 * 109.56365 * 175.97021 * 9 7 2 36 36 H 1.08997 * 109.47751 * 57.52068 * 13 12 10 37 37 H 1.08997 * 109.46781 * 177.52496 * 13 12 10 38 38 H 0.96996 * 120.00292 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.47273 * 306.37547 * 22 12 10 40 40 H 1.08998 * 109.47634 * 66.36928 * 22 12 10 41 41 H 1.08997 * 109.47098 * 294.76193 * 23 22 12 42 42 H 1.09002 * 109.47311 * 54.76002 * 23 22 12 43 43 H 1.09003 * 109.56975 * 186.28407 * 26 10 9 44 44 H 1.08995 * 109.57562 * 66.04338 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3884 0.0000 4 1 1.4810 2.0301 0.7106 5 6 1.8355 1.8592 -1.4632 6 6 1.8355 0.5617 -2.2983 7 6 2.0020 -0.5751 -1.2637 8 1 1.4741 -1.4818 -1.5591 9 6 3.5075 -0.8075 -1.0589 10 6 4.1958 0.5438 -0.8442 11 1 5.2440 0.3830 -0.5920 12 7 4.1072 1.3364 -2.0779 13 6 4.7233 0.6251 -3.2059 14 6 6.1901 0.4183 -2.9285 15 1 6.6095 0.7269 -1.9823 16 6 6.9967 -0.1647 -3.8827 17 7 8.2537 -0.4343 -3.6056 18 14 6.3040 -0.5719 -5.5690 19 1 6.5909 0.5449 -6.5048 20 1 6.9349 -1.8169 -6.0760 21 1 4.8354 -0.7672 -5.4670 22 6 4.7138 2.6619 -1.8967 23 6 4.4632 3.5121 -3.1437 24 6 4.9601 4.8786 -2.9139 25 7 5.3437 5.9331 -2.7366 26 6 3.5075 1.2985 0.2967 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.8911 2.3894 -1.5861 31 1 2.6702 2.4971 -1.7537 32 1 2.6702 0.5618 -2.9993 33 1 0.8910 0.4539 -2.8316 34 1 3.6639 -1.4380 -0.1835 35 1 3.9246 -1.2960 -1.9396 36 1 4.2380 -0.3424 -3.3342 37 1 4.6051 1.2144 -4.1151 38 1 8.8210 -0.8448 -4.2767 39 1 4.2692 3.1495 -1.0291 40 1 5.7871 2.5522 -1.7414 41 1 4.9860 3.0735 -3.9936 42 1 3.3938 3.5447 -3.3523 43 1 3.9248 2.3025 0.3744 44 1 3.6635 0.7647 1.2341 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169144600.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:27 Heat of formation + Delta-G solvation = 71.368772 kcal Electronic energy + Delta-G solvation = -23724.335177 eV Core-core repulsion = 20677.937463 eV Total energy + Delta-G solvation = -3046.397714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.22305 -38.50342 -37.33251 -34.59754 -33.68062 -32.55956 -31.47716 -30.97386 -28.81046 -26.27706 -25.33300 -24.54758 -23.47480 -21.33358 -20.80047 -19.83064 -18.57319 -18.26497 -17.37546 -17.06986 -16.42310 -15.77790 -15.48731 -15.21077 -14.94957 -14.73635 -14.59522 -14.13097 -13.89292 -13.71266 -13.60108 -13.42256 -13.19392 -13.15913 -12.99917 -12.79718 -12.52378 -12.42545 -12.26607 -12.09895 -11.96549 -11.68879 -11.50965 -11.33394 -11.10880 -10.99395 -10.75206 -10.64164 -10.61404 -9.18071 -8.60273 -8.19553 -6.21989 1.43320 1.47164 1.56213 1.78868 1.86732 2.43337 2.97990 3.18224 3.27145 3.57248 3.97339 4.03367 4.21412 4.30734 4.37112 4.43043 4.47842 4.55427 4.64517 4.69993 4.72982 4.79735 4.80781 4.95922 4.99182 5.06566 5.14400 5.15913 5.19635 5.24856 5.29270 5.38211 5.40071 5.43914 5.49777 5.55848 5.67851 5.88660 5.97920 6.19900 6.24307 6.43350 6.45045 6.49095 6.65093 6.87495 7.44208 8.96857 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.008038 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.992311 B = 3482.715306 C = 4624.181630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.525 5.525 3 C 0.069 3.931 4 H 0.093 0.907 5 C -0.137 4.137 6 C -0.142 4.142 7 C 0.070 3.930 8 H 0.084 0.916 9 C -0.096 4.096 10 C 0.095 3.905 11 H 0.015 0.985 12 N -0.486 5.486 13 C 0.145 3.855 14 C -0.533 4.533 15 H 0.034 0.966 16 C 0.010 3.990 17 N -0.953 5.953 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.300 1.300 21 H -0.229 1.229 22 C 0.051 3.949 23 C -0.020 4.020 24 C 0.243 3.757 25 N -0.499 5.499 26 C -0.101 4.101 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.260 0.740 39 H 0.092 0.908 40 H 0.022 0.978 41 H 0.111 0.889 42 H 0.147 0.853 43 H 0.071 0.929 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 1.708 2.951 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.247 5.247 3 C -0.040 4.040 4 H 0.111 0.889 5 C -0.176 4.176 6 C -0.181 4.181 7 C -0.039 4.039 8 H 0.102 0.898 9 C -0.134 4.134 10 C -0.014 4.014 11 H 0.033 0.967 12 N -0.209 5.209 13 C 0.018 3.982 14 C -0.572 4.572 15 H 0.052 0.948 16 C -0.187 4.187 17 N -0.595 5.595 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.227 1.227 21 H -0.151 1.151 22 C -0.078 4.078 23 C -0.060 4.060 24 C -0.074 4.074 25 N -0.178 5.178 26 C -0.139 4.139 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.040 0.960 41 H 0.129 0.871 42 H 0.164 0.836 43 H 0.090 0.910 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.001 2.963 3.547 17.618 hybrid contribution 1.339 -0.682 -1.183 1.913 sum -15.662 2.281 2.363 16.003 Atomic orbital electron populations 1.22406 0.87933 1.01835 1.00866 1.65424 1.08359 1.16219 1.34743 1.22966 0.94272 0.89403 0.97338 0.88887 1.23145 1.01698 0.98800 0.93960 1.23146 1.01315 0.94151 0.99441 1.22901 0.94138 0.97761 0.89098 0.89821 1.21646 0.94854 0.95909 1.00979 1.21377 0.96335 0.93574 0.90097 0.96720 1.63714 1.50561 1.01949 1.04657 1.20349 0.90548 0.95433 0.91891 1.21897 0.95036 1.38905 1.01368 0.94789 1.25859 0.94785 0.95203 1.02868 1.70105 1.08315 1.44958 1.36078 0.85901 0.80971 0.77449 0.79810 1.19649 1.22655 1.15125 1.21998 0.97957 0.91000 0.96884 1.19466 1.04641 0.81243 1.00638 1.29574 0.91533 0.94782 0.91465 1.81181 1.11402 1.14622 1.10577 1.21816 0.95191 0.99964 0.96937 0.95093 0.91626 0.91142 0.93649 0.87194 0.87851 0.94072 0.92535 0.92333 0.94133 0.93389 0.93116 0.89045 0.95978 0.87063 0.83566 0.91043 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.45 127.69 1.21 1.56 16 2 N -0.52 -12.64 5.29 -853.44 -4.51 -17.15 16 3 C 0.07 1.57 3.68 45.35 0.17 1.74 16 4 H 0.09 1.88 8.11 -2.39 -0.02 1.87 16 5 C -0.14 -3.02 5.27 31.58 0.17 -2.86 16 6 C -0.14 -3.47 5.23 31.58 0.17 -3.30 16 7 C 0.07 1.81 3.68 45.35 0.17 1.97 16 8 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 9 C -0.10 -3.00 5.16 30.89 0.16 -2.84 16 10 C 0.09 3.05 1.97 45.01 0.09 3.13 16 11 H 0.01 0.60 6.60 -2.38 -0.02 0.59 16 12 N -0.49 -14.59 0.54 -874.95 -0.48 -15.06 16 13 C 0.14 5.35 2.05 85.56 0.17 5.52 16 14 C -0.53 -26.19 8.12 25.60 0.21 -25.99 16 15 H 0.03 1.93 6.08 -2.91 -0.02 1.91 16 16 C 0.01 0.53 5.47 84.66 0.46 1.00 16 17 N -0.95 -56.76 13.96 21.45 0.30 -56.46 16 18 Si 0.93 39.60 27.44 68.60 1.88 41.48 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.23 -8.43 6.62 99.48 0.66 -7.77 16 22 C 0.05 1.46 3.25 86.30 0.28 1.74 16 23 C -0.02 -0.48 5.22 28.79 0.15 -0.33 16 24 C 0.24 6.92 15.43 89.44 1.38 8.30 16 25 N -0.50 -16.89 18.54 20.01 0.37 -16.52 16 26 C -0.10 -2.66 5.16 30.88 0.16 -2.50 16 27 H 0.03 0.58 6.88 -2.39 -0.02 0.57 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.11 2.43 2.65 -2.39 -0.01 2.42 16 32 H 0.10 2.85 3.57 -2.39 -0.01 2.84 16 33 H 0.04 0.93 8.01 -2.39 -0.02 0.91 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.05 6.00 -2.39 -0.01 2.04 16 36 H 0.04 1.54 4.86 -2.39 -0.01 1.53 16 37 H 0.05 1.65 5.48 -2.39 -0.01 1.63 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.09 2.27 5.24 -2.38 -0.01 2.26 16 40 H 0.02 0.82 6.56 -2.39 -0.02 0.80 16 41 H 0.11 2.89 6.70 -2.39 -0.02 2.87 16 42 H 0.15 2.50 7.35 -2.39 -0.02 2.48 16 43 H 0.07 1.76 5.91 -2.39 -0.01 1.75 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -61.62 312.79 3.47 -58.16 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.97 Total: 18.42 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 4.94 Total: -12.86 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -4.32 Total: -105.19 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.88 Total: 41.48 kcal Total: -61.62 3.47 -58.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169144600.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.524 kcal (2) G-P(sol) polarization free energy of solvation -61.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds