Wall clock time and date at job start Mon Mar 30 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 111.00368 * 2 1 4 4 C 1.46900 * 110.99902 * 123.95196 * 2 1 3 5 5 C 1.53003 * 109.47155 * 66.04445 * 4 2 1 6 6 C 1.52999 * 109.47274 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46720 * 60.00353 * 6 5 4 8 8 C 1.52994 * 109.47397 * 300.00550 * 6 5 4 9 9 N 1.46497 * 109.47144 * 180.02562 * 6 5 4 10 10 C 1.38365 * 119.99922 * 63.13469 * 9 6 5 11 11 C 1.39706 * 119.43030 * 174.84025 * 10 9 6 12 12 C 1.36565 * 119.49696 * 180.02562 * 11 10 9 13 13 C 1.41327 * 118.40629 * 359.97438 * 12 11 10 14 14 C 1.41202 * 120.57234 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99913 * 206.83923 * 14 13 12 16 16 C 1.39863 * 119.99714 * 26.84542 * 14 13 12 17 17 N 1.30898 * 120.00512 * 11.61790 * 16 14 13 18 18 Si 1.86802 * 119.99942 * 191.61952 * 16 14 13 19 19 H 1.48503 * 109.47050 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47367 * 119.99916 * 18 16 14 21 21 H 1.48498 * 109.47220 * 239.99963 * 18 16 14 22 22 C 1.40757 * 118.85851 * 0.02562 * 13 12 11 23 23 N 1.31493 * 120.36890 * 359.72730 * 22 13 12 24 24 H 1.08999 * 109.46835 * 296.04787 * 1 2 3 25 25 H 1.08997 * 109.46443 * 56.04619 * 1 2 3 26 26 H 1.08999 * 109.46959 * 176.04909 * 1 2 3 27 27 H 1.08997 * 109.47034 * 183.95256 * 3 2 1 28 28 H 1.09004 * 109.46650 * 303.95221 * 3 2 1 29 29 H 1.08993 * 109.46997 * 63.95047 * 3 2 1 30 30 H 1.09002 * 109.47557 * 306.04733 * 4 2 1 31 31 H 1.09002 * 109.47251 * 186.04565 * 4 2 1 32 32 H 1.09002 * 109.46712 * 60.00288 * 5 4 2 33 33 H 1.08995 * 109.47345 * 299.99904 * 5 4 2 34 34 H 1.08995 * 109.47092 * 293.83483 * 7 6 5 35 35 H 1.08994 * 109.47590 * 53.83536 * 7 6 5 36 36 H 1.08997 * 109.46951 * 173.83793 * 7 6 5 37 37 H 1.09005 * 109.47263 * 186.05862 * 8 6 5 38 38 H 1.09002 * 109.47246 * 306.05329 * 8 6 5 39 39 H 1.08999 * 109.47436 * 66.05285 * 8 6 5 40 40 H 0.97003 * 120.00104 * 243.13138 * 9 6 5 41 41 H 1.07998 * 120.25440 * 359.97438 * 11 10 9 42 42 H 1.07992 * 120.80074 * 180.02562 * 12 11 10 43 43 H 0.97001 * 120.00222 * 180.02562 * 17 16 14 44 44 H 1.07998 * 119.81470 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 6 2.1802 -3.0405 2.1550 7 6 1.5710 -2.5089 3.4539 8 6 3.7021 -2.8932 2.2078 9 7 1.8322 -4.4544 1.9946 10 6 2.3283 -5.1714 0.9202 11 6 2.0786 -6.5435 0.8365 12 6 2.5681 -7.2526 -0.2231 13 6 3.3158 -6.5641 -1.2050 14 6 3.8437 -7.2523 -2.3192 15 1 4.7287 -6.8803 -2.8139 16 6 3.2203 -8.4155 -2.7822 17 7 2.0331 -8.7429 -2.3386 18 14 4.0821 -9.5022 -4.0337 19 1 5.4036 -8.9154 -4.3721 20 1 4.2743 -10.8592 -3.4620 21 1 3.2532 -9.5955 -5.2623 22 6 3.5262 -5.1807 -1.0526 23 7 3.0291 -4.5429 -0.0157 24 1 -0.3633 0.4513 0.9233 25 1 -0.3632 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0829 1.3431 -0.0708 28 1 1.5899 1.9163 -0.8525 29 1 1.7045 1.8723 0.9232 30 1 1.5611 -0.3872 2.0629 31 1 3.0798 -0.6611 1.1757 32 1 2.0658 -2.6214 0.0452 33 1 0.5472 -2.3475 0.9324 34 1 1.9194 -1.4911 3.6288 35 1 0.4840 -2.5120 3.3734 36 1 1.8756 -3.1450 4.2850 37 1 4.1036 -3.5455 2.9835 38 1 4.1278 -3.1708 1.2435 39 1 3.9594 -1.8585 2.4341 40 1 1.2540 -4.8880 2.6416 41 1 1.5037 -7.0398 1.6042 42 1 2.3874 -8.3138 -0.3090 43 1 1.6010 -9.5499 -2.6595 44 1 4.0957 -4.6393 -1.7935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169711305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:24 Heat of formation + Delta-G solvation = 37.432002 kcal Electronic energy + Delta-G solvation = -21986.833394 eV Core-core repulsion = 18938.964072 eV Total energy + Delta-G solvation = -3047.869323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.09141 -37.78478 -36.25339 -33.82742 -31.86493 -30.48883 -29.21020 -28.18815 -27.53358 -26.94757 -24.71959 -24.38698 -22.03111 -21.18568 -20.72307 -18.58617 -17.19603 -16.41996 -15.99302 -15.35241 -15.20741 -14.73299 -14.45203 -13.81892 -13.76500 -13.51836 -13.34855 -12.94083 -12.79383 -12.36698 -12.33358 -11.92997 -11.86634 -11.72689 -11.60241 -11.44914 -11.37881 -11.20523 -11.00957 -10.88711 -10.84529 -10.47206 -10.38109 -10.02506 -9.66829 -9.35938 -8.66435 -8.24358 -8.13212 -7.81714 -6.71161 -6.51350 -4.14330 2.80396 3.04073 3.13267 3.18621 3.33941 4.00740 4.02992 4.27540 4.78955 5.13725 5.20656 5.22876 5.34722 5.37744 5.46914 5.53109 5.62481 5.74553 5.79888 5.83797 5.85703 5.87764 5.99407 6.00796 6.11565 6.12366 6.29216 6.41614 6.54480 6.59533 6.79939 6.89857 7.00843 7.06435 7.13605 7.23498 7.25108 7.44356 7.51383 7.91101 7.99025 8.33436 8.55926 8.70387 8.93642 8.96326 9.80629 10.33270 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.004127 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.905710 B = 6782.715335 C = 7403.304017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.026 3.974 4 C 0.059 3.941 5 C -0.125 4.125 6 C 0.200 3.800 7 C -0.155 4.155 8 C -0.159 4.159 9 N -0.738 5.738 10 C 0.288 3.712 11 C -0.208 4.208 12 C -0.087 4.087 13 C 0.027 3.973 14 C -0.457 4.457 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.815 5.815 18 Si 0.908 3.092 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.276 1.276 22 C 0.012 3.988 23 N -0.509 5.509 24 H 0.019 0.981 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.390 0.610 41 H 0.093 0.907 42 H 0.129 0.871 43 H 0.276 0.724 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 11.591 7.584 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.164 4.164 6 C 0.112 3.888 7 C -0.213 4.213 8 C -0.217 4.217 9 N -0.377 5.377 10 C 0.055 3.945 11 C -0.232 4.232 12 C -0.114 4.114 13 C 0.022 3.978 14 C -0.489 4.489 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.442 5.442 18 Si 0.733 3.267 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.202 1.202 22 C -0.145 4.145 23 N -0.225 5.225 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.224 0.776 41 H 0.111 0.889 42 H 0.146 0.854 43 H 0.087 0.913 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.772 12.214 7.121 14.249 hybrid contribution -0.509 -1.277 0.302 1.408 sum -2.281 10.936 7.423 13.413 Atomic orbital electron populations 1.22406 0.87780 1.02570 0.99673 1.61930 1.07740 1.13140 1.44106 1.22360 1.00820 0.89197 0.99877 1.22296 1.00019 0.94592 0.90014 1.22099 1.00071 0.92166 1.02067 1.19725 0.94121 0.82077 0.92844 1.22122 1.00649 1.01087 0.97434 1.22260 0.95998 0.99424 1.04015 1.43889 1.57341 1.08719 1.27773 1.17778 0.98776 0.87897 0.90021 1.20767 1.07639 0.93367 1.01420 1.21337 0.98350 1.00140 0.91529 1.18352 0.93905 0.92039 0.93503 1.19347 1.11002 1.06956 1.11574 0.90587 1.25814 0.94081 0.97547 0.96873 1.69792 1.12012 1.23217 1.39226 0.86261 0.80426 0.79832 0.80134 1.18575 1.20029 1.20197 1.22289 1.04616 0.91520 0.96116 1.66628 1.13132 1.39430 1.03275 0.96207 0.91849 0.90898 0.91426 0.91703 0.96221 0.95599 0.90709 0.87452 0.93268 0.91847 0.92794 0.92599 0.93851 0.89352 0.93697 0.77582 0.88869 0.85379 0.91288 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.32 60.07 0.56 0.85 16 2 N -0.55 -7.41 5.02 -251.26 -1.26 -8.67 16 3 C 0.03 0.28 9.57 60.07 0.57 0.86 16 4 C 0.06 0.80 4.26 -3.82 -0.02 0.78 16 5 C -0.12 -2.01 4.17 -26.73 -0.11 -2.12 16 6 C 0.20 3.08 0.83 -131.82 -0.11 2.97 16 7 C -0.16 -1.87 8.05 37.16 0.30 -1.58 16 8 C -0.16 -2.52 7.72 37.15 0.29 -2.24 16 9 N -0.74 -13.06 5.20 -47.67 -0.25 -13.31 16 10 C 0.29 6.31 6.90 -155.13 -1.07 5.24 16 11 C -0.21 -4.79 9.85 -39.64 -0.39 -5.18 16 12 C -0.09 -2.23 8.72 -39.01 -0.34 -2.57 16 13 C 0.03 0.71 5.58 -106.65 -0.59 0.12 16 14 C -0.46 -12.08 9.08 -37.85 -0.34 -12.43 16 15 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 16 C 0.07 1.80 5.27 -17.34 -0.09 1.71 16 17 N -0.81 -21.23 10.79 55.54 0.60 -20.63 16 18 Si 0.91 18.97 29.57 -169.99 -5.03 13.94 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 C 0.01 0.30 10.97 -16.75 -0.18 0.12 16 23 N -0.51 -11.71 5.48 -11.79 -0.06 -11.78 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 26 H 0.07 0.96 6.47 -51.93 -0.34 0.62 16 27 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.03 0.32 6.55 -51.93 -0.34 -0.02 16 31 H 0.07 1.03 6.49 -51.93 -0.34 0.69 16 32 H 0.11 2.15 5.98 -51.93 -0.31 1.84 16 33 H 0.05 0.81 6.55 -51.93 -0.34 0.47 16 34 H 0.06 0.69 6.77 -51.93 -0.35 0.34 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.67 6.09 -51.93 -0.32 1.36 16 39 H 0.04 0.61 6.77 -51.93 -0.35 0.25 16 40 H 0.39 6.12 8.46 -40.82 -0.35 5.78 16 41 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.13 3.40 6.19 -52.49 -0.33 3.07 16 43 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 44 H 0.13 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -27.65 341.37 -9.51 -37.16 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.13 Total: 11.60 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.53 Total: -13.45 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.97 Total: -54.39 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.65 -9.51 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169711305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.593 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds