Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 111.00368 * 2 1 4 4 C 1.46900 * 110.99902 * 123.95196 * 2 1 3 5 5 C 1.53003 * 109.47155 * 66.04445 * 4 2 1 6 6 C 1.52999 * 109.47274 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46720 * 60.00353 * 6 5 4 8 8 C 1.52994 * 109.47397 * 300.00550 * 6 5 4 9 9 N 1.46497 * 109.47144 * 180.02562 * 6 5 4 10 10 C 1.38365 * 119.99922 * 63.13469 * 9 6 5 11 11 C 1.39706 * 119.43030 * 174.84025 * 10 9 6 12 12 C 1.36565 * 119.49696 * 180.02562 * 11 10 9 13 13 C 1.41327 * 118.40629 * 359.97438 * 12 11 10 14 14 C 1.41202 * 120.57234 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99913 * 206.83923 * 14 13 12 16 16 C 1.39863 * 119.99714 * 26.84542 * 14 13 12 17 17 N 1.30898 * 120.00512 * 11.61790 * 16 14 13 18 18 Si 1.86802 * 119.99942 * 191.61952 * 16 14 13 19 19 H 1.48503 * 109.47050 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47367 * 119.99916 * 18 16 14 21 21 H 1.48498 * 109.47220 * 239.99963 * 18 16 14 22 22 C 1.40757 * 118.85851 * 0.02562 * 13 12 11 23 23 N 1.31493 * 120.36890 * 359.72730 * 22 13 12 24 24 H 1.08999 * 109.46835 * 296.04787 * 1 2 3 25 25 H 1.08997 * 109.46443 * 56.04619 * 1 2 3 26 26 H 1.08999 * 109.46959 * 176.04909 * 1 2 3 27 27 H 1.08997 * 109.47034 * 183.95256 * 3 2 1 28 28 H 1.09004 * 109.46650 * 303.95221 * 3 2 1 29 29 H 1.08993 * 109.46997 * 63.95047 * 3 2 1 30 30 H 1.09002 * 109.47557 * 306.04733 * 4 2 1 31 31 H 1.09002 * 109.47251 * 186.04565 * 4 2 1 32 32 H 1.09002 * 109.46712 * 60.00288 * 5 4 2 33 33 H 1.08995 * 109.47345 * 299.99904 * 5 4 2 34 34 H 1.08995 * 109.47092 * 293.83483 * 7 6 5 35 35 H 1.08994 * 109.47590 * 53.83536 * 7 6 5 36 36 H 1.08997 * 109.46951 * 173.83793 * 7 6 5 37 37 H 1.09005 * 109.47263 * 186.05862 * 8 6 5 38 38 H 1.09002 * 109.47246 * 306.05329 * 8 6 5 39 39 H 1.08999 * 109.47436 * 66.05285 * 8 6 5 40 40 H 0.97003 * 120.00104 * 243.13138 * 9 6 5 41 41 H 1.07998 * 120.25440 * 359.97438 * 11 10 9 42 42 H 1.07992 * 120.80074 * 180.02562 * 12 11 10 43 43 H 0.97001 * 120.00222 * 180.02562 * 17 16 14 44 44 H 1.07998 * 119.81470 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 6 2.1802 -3.0405 2.1550 7 6 1.5710 -2.5089 3.4539 8 6 3.7021 -2.8932 2.2078 9 7 1.8322 -4.4544 1.9946 10 6 2.3283 -5.1714 0.9202 11 6 2.0786 -6.5435 0.8365 12 6 2.5681 -7.2526 -0.2231 13 6 3.3158 -6.5641 -1.2050 14 6 3.8437 -7.2523 -2.3192 15 1 4.7287 -6.8803 -2.8139 16 6 3.2203 -8.4155 -2.7822 17 7 2.0331 -8.7429 -2.3386 18 14 4.0821 -9.5022 -4.0337 19 1 5.4036 -8.9154 -4.3721 20 1 4.2743 -10.8592 -3.4620 21 1 3.2532 -9.5955 -5.2623 22 6 3.5262 -5.1807 -1.0526 23 7 3.0291 -4.5429 -0.0157 24 1 -0.3633 0.4513 0.9233 25 1 -0.3632 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0829 1.3431 -0.0708 28 1 1.5899 1.9163 -0.8525 29 1 1.7045 1.8723 0.9232 30 1 1.5611 -0.3872 2.0629 31 1 3.0798 -0.6611 1.1757 32 1 2.0658 -2.6214 0.0452 33 1 0.5472 -2.3475 0.9324 34 1 1.9194 -1.4911 3.6288 35 1 0.4840 -2.5120 3.3734 36 1 1.8756 -3.1450 4.2850 37 1 4.1036 -3.5455 2.9835 38 1 4.1278 -3.1708 1.2435 39 1 3.9594 -1.8585 2.4341 40 1 1.2540 -4.8880 2.6416 41 1 1.5037 -7.0398 1.6042 42 1 2.3874 -8.3138 -0.3090 43 1 1.6010 -9.5499 -2.6595 44 1 4.0957 -4.6393 -1.7935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169711305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = 21.676020 kcal Electronic energy + Delta-G solvation = -21987.516625 eV Core-core repulsion = 18938.964072 eV Total energy + Delta-G solvation = -3048.552553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68818 -39.16613 -37.51797 -35.64850 -33.45932 -32.37504 -30.71055 -29.60579 -28.48390 -28.11233 -26.49507 -25.56543 -23.69918 -22.90831 -22.07458 -19.92127 -19.13091 -18.07081 -17.37926 -16.86789 -16.37591 -16.05919 -15.68435 -15.51466 -15.18872 -14.81805 -14.69021 -14.51542 -14.34691 -13.78063 -13.50007 -13.30800 -13.20959 -13.10071 -12.94459 -12.82882 -12.66527 -12.59198 -12.44245 -12.34758 -12.06731 -11.96787 -11.72232 -11.57715 -11.27478 -11.14512 -10.37021 -10.03668 -9.66987 -9.18645 -8.56706 -8.31844 -6.10393 0.94421 1.18887 1.41966 1.56210 1.58027 2.27147 2.75167 2.88931 3.12940 3.84754 4.05161 4.08058 4.18460 4.27023 4.31718 4.40730 4.49555 4.52000 4.67837 4.69980 4.73731 4.79137 4.83944 4.84712 4.92351 5.00715 5.02639 5.04975 5.05636 5.18432 5.26541 5.30891 5.34479 5.44165 5.65722 5.68808 5.81166 6.02810 6.05560 6.17485 6.21098 6.51729 6.80130 6.93038 7.04802 7.12172 7.98230 8.46569 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.004127 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.905710 B = 6782.715335 C = 7403.304017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.573 5.573 3 C 0.027 3.973 4 C 0.068 3.932 5 C -0.117 4.117 6 C 0.195 3.805 7 C -0.146 4.146 8 C -0.154 4.154 9 N -0.728 5.728 10 C 0.297 3.703 11 C -0.215 4.215 12 C -0.102 4.102 13 C -0.005 4.005 14 C -0.492 4.492 15 H 0.073 0.927 16 C 0.030 3.970 17 N -0.847 5.847 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.270 1.270 22 C 0.001 3.999 23 N -0.506 5.506 24 H 0.034 0.966 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.403 0.597 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.283 0.717 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 12.936 9.009 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.298 5.298 3 C -0.121 4.121 4 C -0.060 4.060 5 C -0.156 4.156 6 C 0.107 3.893 7 C -0.204 4.204 8 C -0.212 4.212 9 N -0.367 5.367 10 C 0.063 3.937 11 C -0.239 4.239 12 C -0.129 4.129 13 C -0.010 4.010 14 C -0.524 4.524 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.475 5.475 18 Si 0.803 3.197 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.195 1.195 22 C -0.156 4.156 23 N -0.223 5.223 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.239 0.761 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.182 13.594 8.579 16.223 hybrid contribution -0.447 -1.557 -0.028 1.620 sum -2.629 12.037 8.551 14.998 Atomic orbital electron populations 1.22374 0.87113 1.01788 1.00898 1.61890 1.08631 1.14808 1.44432 1.22387 1.00831 0.87880 1.01001 1.22153 0.99983 0.92834 0.91045 1.21930 0.99205 0.94142 1.00316 1.19970 0.94148 0.80496 0.94654 1.22046 1.00961 1.02127 0.95235 1.22184 0.96075 1.01021 1.01935 1.44027 1.56562 1.09762 1.26382 1.18088 0.97246 0.88029 0.90364 1.21029 1.07534 0.94013 1.01330 1.21311 0.99298 0.99755 0.92574 1.18624 0.95172 0.92885 0.94281 1.19571 1.11686 1.08611 1.12525 0.90849 1.26628 0.94473 0.98312 0.98688 1.69854 1.13165 1.23923 1.40585 0.85158 0.79158 0.77827 0.77517 1.18309 1.19156 1.19524 1.22418 1.05010 0.91256 0.96946 1.66786 1.13319 1.39001 1.03149 0.94718 0.90878 0.92649 0.91387 0.90834 0.94810 0.93537 0.90927 0.91676 0.93894 0.89896 0.91948 0.91517 0.94043 0.92774 0.91031 0.76145 0.86287 0.86824 0.90665 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.32 127.69 1.19 1.78 16 2 N -0.57 -14.62 5.02 -948.84 -4.76 -19.38 16 3 C 0.03 0.52 9.57 127.69 1.22 1.74 16 4 C 0.07 1.70 4.26 86.30 0.37 2.07 16 5 C -0.12 -3.63 4.17 30.60 0.13 -3.50 16 6 C 0.19 5.59 0.83 3.60 0.00 5.59 16 7 C -0.15 -2.97 8.05 71.98 0.58 -2.39 16 8 C -0.15 -4.65 7.72 71.98 0.56 -4.09 16 9 N -0.73 -24.67 5.20 -304.74 -1.59 -26.26 16 10 C 0.30 13.02 6.90 133.32 0.92 13.94 16 11 C -0.22 -9.95 9.85 22.23 0.22 -9.73 16 12 C -0.10 -5.42 8.72 22.64 0.20 -5.23 16 13 C 0.00 -0.25 5.58 -21.18 -0.12 -0.37 16 14 C -0.49 -27.06 9.08 23.39 0.21 -26.85 16 15 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 16 C 0.03 1.57 5.27 85.23 0.45 2.02 16 17 N -0.85 -45.30 10.79 21.81 0.24 -45.06 16 18 Si 0.98 39.50 29.57 68.60 2.03 41.53 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 22 C 0.00 0.04 10.97 85.36 0.94 0.97 16 23 N -0.51 -23.81 5.48 -191.20 -1.05 -24.86 16 24 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 26 H 0.05 1.42 6.47 -2.39 -0.02 1.40 16 27 H 0.07 1.29 8.12 -2.39 -0.02 1.28 16 28 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 29 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.98 6.55 -2.39 -0.02 0.97 16 31 H 0.07 1.84 6.49 -2.39 -0.02 1.83 16 32 H 0.06 2.63 5.98 -2.39 -0.01 2.61 16 33 H 0.04 1.37 6.55 -2.39 -0.02 1.35 16 34 H 0.08 1.41 6.77 -2.39 -0.02 1.39 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.05 2.03 6.09 -2.39 -0.01 2.02 16 39 H 0.07 1.75 6.77 -2.39 -0.02 1.74 16 40 H 0.40 11.67 8.46 -92.71 -0.78 10.89 16 41 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.11 6.28 6.19 -2.91 -0.02 6.26 16 43 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 44 H 0.13 6.30 8.06 -2.91 -0.02 6.27 16 Total: -1.00 -61.75 341.37 1.93 -59.81 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: 0.20 Total: 38.27 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 6.86 Total: -24.04 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -7.16 Total: -115.56 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -61.75 1.93 -59.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169711305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.490 kcal (2) G-P(sol) polarization free energy of solvation -61.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds