Wall clock time and date at job start Mon Mar 30 2020 01:40:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.46896 * 111.00140 * 2 1
4 4 C 1.46901 * 111.00176 * 123.95852 * 2 1 3
5 5 C 1.52998 * 109.47351 * 66.03915 * 4 2 1
6 6 C 1.52995 * 109.47159 * 180.02562 * 5 4 2
7 7 C 1.52995 * 109.47160 * 60.00550 * 6 5 4
8 8 C 1.53000 * 109.47275 * 300.00544 * 6 5 4
9 9 N 1.46499 * 109.47274 * 180.02562 * 6 5 4
10 10 C 1.38094 * 120.00487 * 179.97438 * 9 6 5
11 11 N 1.32266 * 119.89911 * 0.02562 * 10 9 6
12 12 C 1.31969 * 121.86259 * 179.97438 * 11 10 9
13 13 C 1.38679 * 121.44849 * 359.96983 * 12 11 10
14 14 C 1.38002 * 119.62771 * 0.28465 * 13 12 11
15 15 C 1.41004 * 118.28113 * 359.50224 * 14 13 12
16 16 C 1.41017 * 120.70923 * 180.26483 * 15 14 13
17 17 H 1.08003 * 120.00443 * 205.14945 * 16 15 14
18 18 C 1.39945 * 119.99873 * 25.14873 * 16 15 14
19 19 N 1.30875 * 120.00032 * 14.24180 * 18 16 15
20 20 Si 1.86799 * 120.00099 * 194.24080 * 18 16 15
21 21 H 1.48508 * 109.47089 * 60.00067 * 20 18 16
22 22 H 1.48504 * 109.47030 * 179.97438 * 20 18 16
23 23 H 1.48500 * 109.47207 * 300.00345 * 20 18 16
24 24 H 1.09000 * 109.46977 * 296.04337 * 1 2 3
25 25 H 1.09002 * 109.47424 * 56.04716 * 1 2 3
26 26 H 1.08997 * 109.47483 * 176.04399 * 1 2 3
27 27 H 1.09006 * 109.47326 * 183.95477 * 3 2 1
28 28 H 1.08993 * 109.47405 * 303.95332 * 3 2 1
29 29 H 1.08996 * 109.47031 * 63.95490 * 3 2 1
30 30 H 1.09010 * 109.46608 * 306.04418 * 4 2 1
31 31 H 1.08997 * 109.47313 * 186.04540 * 4 2 1
32 32 H 1.09010 * 109.46854 * 60.00653 * 5 4 2
33 33 H 1.08997 * 109.47422 * 300.00559 * 5 4 2
34 34 H 1.08999 * 109.47641 * 180.02562 * 7 6 5
35 35 H 1.08998 * 109.46895 * 299.99778 * 7 6 5
36 36 H 1.08997 * 109.47084 * 59.99818 * 7 6 5
37 37 H 1.09003 * 109.46773 * 299.99805 * 8 6 5
38 38 H 1.08998 * 109.47335 * 59.99882 * 8 6 5
39 39 H 1.09000 * 109.47312 * 180.02562 * 8 6 5
40 40 H 0.96998 * 120.00102 * 0.02562 * 9 6 5
41 41 H 1.08001 * 119.27717 * 180.02562 * 12 11 10
42 42 H 1.08001 * 120.18735 * 179.97438 * 13 12 11
43 43 H 1.08004 * 120.86120 * 179.74915 * 14 13 12
44 44 H 0.97001 * 119.99653 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9955 -0.7661 1.1375
5 6 1.6314 -2.2427 0.9703
6 6 2.1792 -3.0404 2.1554
7 6 1.5690 -2.5087 3.4537
8 6 3.7011 -2.8932 2.2094
9 7 1.8311 -4.4543 1.9950
10 6 2.2221 -5.3742 2.9479
11 7 2.9104 -4.9763 4.0049
12 6 3.3032 -5.8218 4.9390
13 6 3.0120 -7.1753 4.8587
14 6 2.3012 -7.6572 3.7784
15 6 1.8842 -6.7414 2.7907
16 6 1.1502 -7.1773 1.6683
17 1 1.1787 -6.6089 0.7504
18 6 0.3849 -8.3465 1.7437
19 7 0.1209 -8.8818 2.9085
20 14 -0.2599 -9.1431 0.1820
21 1 0.8820 -9.5175 -0.6906
22 1 -1.0354 -10.3605 0.5311
23 1 -1.1383 -8.1850 -0.5361
24 1 -0.3633 0.4512 0.9233
25 1 -0.3634 0.5740 -0.8524
26 1 -0.3634 -1.0252 -0.0709
27 1 3.0828 1.3432 -0.0709
28 1 1.5899 1.9163 -0.8524
29 1 1.7044 1.8723 0.9233
30 1 1.5611 -0.3873 2.0628
31 1 3.0797 -0.6612 1.1756
32 1 2.0658 -2.6214 0.0450
33 1 0.5471 -2.3475 0.9323
34 1 1.9596 -3.0766 4.2981
35 1 1.8284 -1.4567 3.5729
36 1 0.4848 -2.6135 3.4153
37 1 4.1358 -3.2721 1.2843
38 1 3.9605 -1.8413 2.3285
39 1 4.0914 -3.4619 3.0534
40 1 1.3266 -4.7446 1.2190
41 1 3.8630 -5.4514 5.7851
42 1 3.3439 -7.8492 5.6346
43 1 2.0669 -8.7081 3.6936
44 1 -0.4099 -9.6920 2.9607
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169711841.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:40:27
Heat of formation + Delta-G solvation = 37.128642 kcal
Electronic energy + Delta-G solvation = -22165.329522 eV
Core-core repulsion = 19117.447044 eV
Total energy + Delta-G solvation = -3047.882477 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.185 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-39.05265 -37.90377 -36.12261 -33.92749 -32.10357 -30.39709 -28.83919 -27.95212
-27.57046 -26.63240 -25.45049 -24.48083 -21.95042 -21.34132 -20.44113 -18.54135
-17.21531 -16.58495 -15.88050 -15.50456 -15.14730 -14.63759 -14.52119 -13.95847
-13.85496 -13.45081 -13.18625 -13.05793 -12.78493 -12.48863 -12.35155 -12.00792
-11.90333 -11.75037 -11.51645 -11.38047 -11.30333 -10.98995 -10.94911 -10.85820
-10.70306 -10.54000 -10.39387 -10.16217 -9.70249 -9.27493 -8.91205 -8.40229
-7.97400 -7.78370 -6.74720 -6.44984 -4.20290 2.78509 3.07261 3.09570
3.15483 3.27317 3.86707 3.94630 4.41389 4.73653 5.01784 5.07640
5.22012 5.31413 5.40080 5.49331 5.56361 5.62782 5.71607 5.73224
5.81142 5.85257 5.88195 6.00781 6.20172 6.22183 6.29840 6.41699
6.49124 6.52285 6.63220 6.79648 6.92711 6.95605 6.98670 7.08012
7.09908 7.16525 7.30833 7.73234 7.86050 8.04974 8.34705 8.59190
8.71628 8.83200 9.07332 9.82966 10.24710
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.017023 B = 0.005106 C = 0.004123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1644.469581 B = 5482.781126 C = 6789.860705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.549 5.549
3 C 0.025 3.975
4 C 0.057 3.943
5 C -0.117 4.117
6 C 0.198 3.802
7 C -0.160 4.160
8 C -0.160 4.160
9 N -0.723 5.723
10 C 0.312 3.688
11 N -0.526 5.526
12 C 0.000 4.000
13 C -0.194 4.194
14 C -0.125 4.125
15 C 0.029 3.971
16 C -0.455 4.455
17 H 0.073 0.927
18 C 0.074 3.926
19 N -0.802 5.802
20 Si 0.907 3.093
21 H -0.265 1.265
22 H -0.280 1.280
23 H -0.267 1.267
24 H 0.024 0.976
25 H 0.064 0.936
26 H 0.073 0.927
27 H 0.067 0.933
28 H 0.065 0.935
29 H 0.023 0.977
30 H 0.039 0.961
31 H 0.078 0.922
32 H 0.071 0.929
33 H 0.063 0.937
34 H 0.087 0.913
35 H 0.043 0.957
36 H 0.041 0.959
37 H 0.043 0.957
38 H 0.044 0.956
39 H 0.086 0.914
40 H 0.400 0.600
41 H 0.116 0.884
42 H 0.092 0.908
43 H 0.126 0.874
44 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.942 12.204 -3.864 12.836
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 N -0.273 5.273
3 C -0.123 4.123
4 C -0.071 4.071
5 C -0.155 4.155
6 C 0.110 3.890
7 C -0.219 4.219
8 C -0.218 4.218
9 N -0.361 5.361
10 C 0.075 3.925
11 N -0.243 5.243
12 C -0.154 4.154
13 C -0.217 4.217
14 C -0.151 4.151
15 C 0.022 3.978
16 C -0.487 4.487
17 H 0.091 0.909
18 C -0.142 4.142
19 N -0.428 5.428
20 Si 0.732 3.268
21 H -0.190 1.190
22 H -0.205 1.205
23 H -0.192 1.192
24 H 0.042 0.958
25 H 0.082 0.918
26 H 0.092 0.908
27 H 0.086 0.914
28 H 0.084 0.916
29 H 0.041 0.959
30 H 0.057 0.943
31 H 0.096 0.904
32 H 0.090 0.910
33 H 0.082 0.918
34 H 0.106 0.894
35 H 0.062 0.938
36 H 0.061 0.939
37 H 0.062 0.938
38 H 0.063 0.937
39 H 0.105 0.895
40 H 0.237 0.763
41 H 0.133 0.867
42 H 0.110 0.890
43 H 0.144 0.856
44 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 1.256 12.778 -3.988 13.445
hybrid contribution -1.125 -1.095 -0.221 1.586
sum 0.130 11.683 -4.210 12.419
Atomic orbital electron populations
1.22438 0.87576 1.02658 1.00077 1.61977 1.07976 1.13452 1.43902
1.22360 1.00752 0.89042 1.00187 1.22258 1.00362 0.93545 0.90886
1.21786 1.01111 0.93810 0.98818 1.19753 0.94001 0.81961 0.93322
1.22287 0.99882 0.99495 1.00232 1.22285 0.96042 1.00346 1.03163
1.43901 1.63072 1.03826 1.25310 1.18457 0.97542 0.87111 0.89418
1.66586 1.15765 1.38696 1.03274 1.21400 1.05761 0.90168 0.98040
1.21389 1.04223 0.96171 0.99870 1.21394 0.99018 0.99794 0.94897
1.17924 0.95025 0.89326 0.95522 1.19110 1.24382 1.07152 0.98031
0.90866 1.25795 0.94819 0.96531 0.97038 1.69798 1.29963 1.18193
1.24890 0.86387 0.79333 0.78883 0.82197 1.19001 1.20465 1.19155
0.95764 0.91752 0.90833 0.91419 0.91617 0.95857 0.94287 0.90350
0.91001 0.91794 0.89433 0.93775 0.93935 0.93765 0.93672 0.89513
0.76302 0.86680 0.88985 0.85639 0.91022
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.22 9.32 60.06 0.56 0.78 16
2 N -0.55 -6.44 5.02 -251.27 -1.26 -7.70 16
3 C 0.03 0.24 9.57 60.06 0.57 0.81 16
4 C 0.06 0.72 4.25 -3.82 -0.02 0.70 16
5 C -0.12 -1.68 4.31 -26.73 -0.12 -1.79 16
6 C 0.20 3.37 0.83 -131.82 -0.11 3.26 16
7 C -0.16 -2.76 8.06 37.16 0.30 -2.46 16
8 C -0.16 -2.69 8.05 37.16 0.30 -2.39 16
9 N -0.72 -14.82 5.14 -47.30 -0.24 -15.07 16
10 C 0.31 7.47 6.94 -155.02 -1.08 6.40 16
11 N -0.53 -12.18 5.46 -11.87 -0.06 -12.25 16
12 C 0.00 -0.01 11.17 -17.33 -0.19 -0.20 16
13 C -0.19 -4.56 10.08 -39.50 -0.40 -4.96 16
14 C -0.12 -3.23 8.79 -38.62 -0.34 -3.57 16
15 C 0.03 0.76 5.60 -106.47 -0.60 0.16 16
16 C -0.46 -11.59 8.53 -37.89 -0.32 -11.91 16
17 H 0.07 1.76 6.67 -52.48 -0.35 1.41 16
18 C 0.07 1.83 5.23 -17.32 -0.09 1.74 16
19 N -0.80 -20.56 10.83 55.55 0.60 -19.95 16
20 Si 0.91 18.50 29.58 -169.99 -5.03 13.47 16
21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16
22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16
23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16
24 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16
25 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16
26 H 0.07 0.82 6.47 -51.93 -0.34 0.48 16
27 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16
28 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16
29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16
30 H 0.04 0.49 6.41 -51.92 -0.33 0.16 16
31 H 0.08 0.97 6.35 -51.93 -0.33 0.64 16
32 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16
33 H 0.06 0.92 6.55 -51.93 -0.34 0.58 16
34 H 0.09 1.74 5.96 -51.93 -0.31 1.43 16
35 H 0.04 0.65 6.43 -51.93 -0.33 0.31 16
36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16
38 H 0.04 0.64 6.43 -51.93 -0.33 0.31 16
39 H 0.09 1.69 5.96 -51.93 -0.31 1.38 16
40 H 0.40 8.08 6.67 -40.82 -0.27 7.81 16
41 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16
42 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16
43 H 0.13 3.36 6.18 -52.48 -0.32 3.03 16
44 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16
LS Contribution 337.66 15.07 5.09 5.09
Total: -1.00 -27.11 337.66 -9.36 -36.47
By element:
Atomic # 1 Polarization: 20.31 SS G_CDS: -6.93 Total: 13.38 kcal
Atomic # 6 Polarization: -11.91 SS G_CDS: -1.53 Total: -13.44 kcal
Atomic # 7 Polarization: -54.01 SS G_CDS: -0.97 Total: -54.97 kcal
Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -27.11 -9.36 -36.47 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169711841.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.600 kcal
(2) G-P(sol) polarization free energy of solvation -27.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.493 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds