Wall clock time and date at job start Mon Mar 30 2020 01:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00140 * 2 1 4 4 C 1.46901 * 111.00176 * 123.95852 * 2 1 3 5 5 C 1.52998 * 109.47351 * 66.03915 * 4 2 1 6 6 C 1.52995 * 109.47159 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47160 * 60.00550 * 6 5 4 8 8 C 1.53000 * 109.47275 * 300.00544 * 6 5 4 9 9 N 1.46499 * 109.47274 * 180.02562 * 6 5 4 10 10 C 1.38094 * 120.00487 * 179.97438 * 9 6 5 11 11 N 1.32266 * 119.89911 * 0.02562 * 10 9 6 12 12 C 1.31969 * 121.86259 * 179.97438 * 11 10 9 13 13 C 1.38679 * 121.44849 * 359.96983 * 12 11 10 14 14 C 1.38002 * 119.62771 * 0.28465 * 13 12 11 15 15 C 1.41004 * 118.28113 * 359.50224 * 14 13 12 16 16 C 1.41017 * 120.70923 * 180.26483 * 15 14 13 17 17 H 1.08003 * 120.00443 * 205.14945 * 16 15 14 18 18 C 1.39945 * 119.99873 * 25.14873 * 16 15 14 19 19 N 1.30875 * 120.00032 * 14.24180 * 18 16 15 20 20 Si 1.86799 * 120.00099 * 194.24080 * 18 16 15 21 21 H 1.48508 * 109.47089 * 60.00067 * 20 18 16 22 22 H 1.48504 * 109.47030 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47207 * 300.00345 * 20 18 16 24 24 H 1.09000 * 109.46977 * 296.04337 * 1 2 3 25 25 H 1.09002 * 109.47424 * 56.04716 * 1 2 3 26 26 H 1.08997 * 109.47483 * 176.04399 * 1 2 3 27 27 H 1.09006 * 109.47326 * 183.95477 * 3 2 1 28 28 H 1.08993 * 109.47405 * 303.95332 * 3 2 1 29 29 H 1.08996 * 109.47031 * 63.95490 * 3 2 1 30 30 H 1.09010 * 109.46608 * 306.04418 * 4 2 1 31 31 H 1.08997 * 109.47313 * 186.04540 * 4 2 1 32 32 H 1.09010 * 109.46854 * 60.00653 * 5 4 2 33 33 H 1.08997 * 109.47422 * 300.00559 * 5 4 2 34 34 H 1.08999 * 109.47641 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.46895 * 299.99778 * 7 6 5 36 36 H 1.08997 * 109.47084 * 59.99818 * 7 6 5 37 37 H 1.09003 * 109.46773 * 299.99805 * 8 6 5 38 38 H 1.08998 * 109.47335 * 59.99882 * 8 6 5 39 39 H 1.09000 * 109.47312 * 180.02562 * 8 6 5 40 40 H 0.96998 * 120.00102 * 0.02562 * 9 6 5 41 41 H 1.08001 * 119.27717 * 180.02562 * 12 11 10 42 42 H 1.08001 * 120.18735 * 179.97438 * 13 12 11 43 43 H 1.08004 * 120.86120 * 179.74915 * 14 13 12 44 44 H 0.97001 * 119.99653 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6314 -2.2427 0.9703 6 6 2.1792 -3.0404 2.1554 7 6 1.5690 -2.5087 3.4537 8 6 3.7011 -2.8932 2.2094 9 7 1.8311 -4.4543 1.9950 10 6 2.2221 -5.3742 2.9479 11 7 2.9104 -4.9763 4.0049 12 6 3.3032 -5.8218 4.9390 13 6 3.0120 -7.1753 4.8587 14 6 2.3012 -7.6572 3.7784 15 6 1.8842 -6.7414 2.7907 16 6 1.1502 -7.1773 1.6683 17 1 1.1787 -6.6089 0.7504 18 6 0.3849 -8.3465 1.7437 19 7 0.1209 -8.8818 2.9085 20 14 -0.2599 -9.1431 0.1820 21 1 0.8820 -9.5175 -0.6906 22 1 -1.0354 -10.3605 0.5311 23 1 -1.1383 -8.1850 -0.5361 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0709 28 1 1.5899 1.9163 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.5611 -0.3873 2.0628 31 1 3.0797 -0.6612 1.1756 32 1 2.0658 -2.6214 0.0450 33 1 0.5471 -2.3475 0.9323 34 1 1.9596 -3.0766 4.2981 35 1 1.8284 -1.4567 3.5729 36 1 0.4848 -2.6135 3.4153 37 1 4.1358 -3.2721 1.2843 38 1 3.9605 -1.8413 2.3285 39 1 4.0914 -3.4619 3.0534 40 1 1.3266 -4.7446 1.2190 41 1 3.8630 -5.4514 5.7851 42 1 3.3439 -7.8492 5.6346 43 1 2.0669 -8.7081 3.6936 44 1 -0.4099 -9.6920 2.9607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169711841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:27 Heat of formation + Delta-G solvation = 37.128642 kcal Electronic energy + Delta-G solvation = -22165.329522 eV Core-core repulsion = 19117.447044 eV Total energy + Delta-G solvation = -3047.882477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.05265 -37.90377 -36.12261 -33.92749 -32.10357 -30.39709 -28.83919 -27.95212 -27.57046 -26.63240 -25.45049 -24.48083 -21.95042 -21.34132 -20.44113 -18.54135 -17.21531 -16.58495 -15.88050 -15.50456 -15.14730 -14.63759 -14.52119 -13.95847 -13.85496 -13.45081 -13.18625 -13.05793 -12.78493 -12.48863 -12.35155 -12.00792 -11.90333 -11.75037 -11.51645 -11.38047 -11.30333 -10.98995 -10.94911 -10.85820 -10.70306 -10.54000 -10.39387 -10.16217 -9.70249 -9.27493 -8.91205 -8.40229 -7.97400 -7.78370 -6.74720 -6.44984 -4.20290 2.78509 3.07261 3.09570 3.15483 3.27317 3.86707 3.94630 4.41389 4.73653 5.01784 5.07640 5.22012 5.31413 5.40080 5.49331 5.56361 5.62782 5.71607 5.73224 5.81142 5.85257 5.88195 6.00781 6.20172 6.22183 6.29840 6.41699 6.49124 6.52285 6.63220 6.79648 6.92711 6.95605 6.98670 7.08012 7.09908 7.16525 7.30833 7.73234 7.86050 8.04974 8.34705 8.59190 8.71628 8.83200 9.07332 9.82966 10.24710 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.005106 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.469581 B = 5482.781126 C = 6789.860705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.057 3.943 5 C -0.117 4.117 6 C 0.198 3.802 7 C -0.160 4.160 8 C -0.160 4.160 9 N -0.723 5.723 10 C 0.312 3.688 11 N -0.526 5.526 12 C 0.000 4.000 13 C -0.194 4.194 14 C -0.125 4.125 15 C 0.029 3.971 16 C -0.455 4.455 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.802 5.802 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.267 1.267 24 H 0.024 0.976 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.400 0.600 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.126 0.874 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 12.204 -3.864 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.071 4.071 5 C -0.155 4.155 6 C 0.110 3.890 7 C -0.219 4.219 8 C -0.218 4.218 9 N -0.361 5.361 10 C 0.075 3.925 11 N -0.243 5.243 12 C -0.154 4.154 13 C -0.217 4.217 14 C -0.151 4.151 15 C 0.022 3.978 16 C -0.487 4.487 17 H 0.091 0.909 18 C -0.142 4.142 19 N -0.428 5.428 20 Si 0.732 3.268 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.192 1.192 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.237 0.763 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.144 0.856 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.256 12.778 -3.988 13.445 hybrid contribution -1.125 -1.095 -0.221 1.586 sum 0.130 11.683 -4.210 12.419 Atomic orbital electron populations 1.22438 0.87576 1.02658 1.00077 1.61977 1.07976 1.13452 1.43902 1.22360 1.00752 0.89042 1.00187 1.22258 1.00362 0.93545 0.90886 1.21786 1.01111 0.93810 0.98818 1.19753 0.94001 0.81961 0.93322 1.22287 0.99882 0.99495 1.00232 1.22285 0.96042 1.00346 1.03163 1.43901 1.63072 1.03826 1.25310 1.18457 0.97542 0.87111 0.89418 1.66586 1.15765 1.38696 1.03274 1.21400 1.05761 0.90168 0.98040 1.21389 1.04223 0.96171 0.99870 1.21394 0.99018 0.99794 0.94897 1.17924 0.95025 0.89326 0.95522 1.19110 1.24382 1.07152 0.98031 0.90866 1.25795 0.94819 0.96531 0.97038 1.69798 1.29963 1.18193 1.24890 0.86387 0.79333 0.78883 0.82197 1.19001 1.20465 1.19155 0.95764 0.91752 0.90833 0.91419 0.91617 0.95857 0.94287 0.90350 0.91001 0.91794 0.89433 0.93775 0.93935 0.93765 0.93672 0.89513 0.76302 0.86680 0.88985 0.85639 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 60.06 0.56 0.78 16 2 N -0.55 -6.44 5.02 -251.27 -1.26 -7.70 16 3 C 0.03 0.24 9.57 60.06 0.57 0.81 16 4 C 0.06 0.72 4.25 -3.82 -0.02 0.70 16 5 C -0.12 -1.68 4.31 -26.73 -0.12 -1.79 16 6 C 0.20 3.37 0.83 -131.82 -0.11 3.26 16 7 C -0.16 -2.76 8.06 37.16 0.30 -2.46 16 8 C -0.16 -2.69 8.05 37.16 0.30 -2.39 16 9 N -0.72 -14.82 5.14 -47.30 -0.24 -15.07 16 10 C 0.31 7.47 6.94 -155.02 -1.08 6.40 16 11 N -0.53 -12.18 5.46 -11.87 -0.06 -12.25 16 12 C 0.00 -0.01 11.17 -17.33 -0.19 -0.20 16 13 C -0.19 -4.56 10.08 -39.50 -0.40 -4.96 16 14 C -0.12 -3.23 8.79 -38.62 -0.34 -3.57 16 15 C 0.03 0.76 5.60 -106.47 -0.60 0.16 16 16 C -0.46 -11.59 8.53 -37.89 -0.32 -11.91 16 17 H 0.07 1.76 6.67 -52.48 -0.35 1.41 16 18 C 0.07 1.83 5.23 -17.32 -0.09 1.74 16 19 N -0.80 -20.56 10.83 55.55 0.60 -19.95 16 20 Si 0.91 18.50 29.58 -169.99 -5.03 13.47 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 26 H 0.07 0.82 6.47 -51.93 -0.34 0.48 16 27 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 28 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.49 6.41 -51.92 -0.33 0.16 16 31 H 0.08 0.97 6.35 -51.93 -0.33 0.64 16 32 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.06 0.92 6.55 -51.93 -0.34 0.58 16 34 H 0.09 1.74 5.96 -51.93 -0.31 1.43 16 35 H 0.04 0.65 6.43 -51.93 -0.33 0.31 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.64 6.43 -51.93 -0.33 0.31 16 39 H 0.09 1.69 5.96 -51.93 -0.31 1.38 16 40 H 0.40 8.08 6.67 -40.82 -0.27 7.81 16 41 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.13 3.36 6.18 -52.48 -0.32 3.03 16 44 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -27.11 337.66 -9.36 -36.47 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -6.93 Total: 13.38 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.53 Total: -13.44 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.97 Total: -54.97 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.11 -9.36 -36.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169711841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.600 kcal (2) G-P(sol) polarization free energy of solvation -27.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds