Wall clock time and date at job start Mon Mar 30 2020 01:40:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.46896 * 111.00140 * 2 1
4 4 C 1.46901 * 111.00176 * 123.95852 * 2 1 3
5 5 C 1.52998 * 109.47351 * 66.03915 * 4 2 1
6 6 C 1.52995 * 109.47159 * 180.02562 * 5 4 2
7 7 C 1.52995 * 109.47160 * 60.00550 * 6 5 4
8 8 C 1.53000 * 109.47275 * 300.00544 * 6 5 4
9 9 N 1.46499 * 109.47274 * 180.02562 * 6 5 4
10 10 C 1.38094 * 120.00487 * 179.97438 * 9 6 5
11 11 N 1.32266 * 119.89911 * 0.02562 * 10 9 6
12 12 C 1.31969 * 121.86259 * 179.97438 * 11 10 9
13 13 C 1.38679 * 121.44849 * 359.96983 * 12 11 10
14 14 C 1.38002 * 119.62771 * 0.28465 * 13 12 11
15 15 C 1.41004 * 118.28113 * 359.50224 * 14 13 12
16 16 C 1.41017 * 120.70923 * 180.26483 * 15 14 13
17 17 H 1.08003 * 120.00443 * 205.14945 * 16 15 14
18 18 C 1.39945 * 119.99873 * 25.14873 * 16 15 14
19 19 N 1.30875 * 120.00032 * 14.24180 * 18 16 15
20 20 Si 1.86799 * 120.00099 * 194.24080 * 18 16 15
21 21 H 1.48508 * 109.47089 * 60.00067 * 20 18 16
22 22 H 1.48504 * 109.47030 * 179.97438 * 20 18 16
23 23 H 1.48500 * 109.47207 * 300.00345 * 20 18 16
24 24 H 1.09000 * 109.46977 * 296.04337 * 1 2 3
25 25 H 1.09002 * 109.47424 * 56.04716 * 1 2 3
26 26 H 1.08997 * 109.47483 * 176.04399 * 1 2 3
27 27 H 1.09006 * 109.47326 * 183.95477 * 3 2 1
28 28 H 1.08993 * 109.47405 * 303.95332 * 3 2 1
29 29 H 1.08996 * 109.47031 * 63.95490 * 3 2 1
30 30 H 1.09010 * 109.46608 * 306.04418 * 4 2 1
31 31 H 1.08997 * 109.47313 * 186.04540 * 4 2 1
32 32 H 1.09010 * 109.46854 * 60.00653 * 5 4 2
33 33 H 1.08997 * 109.47422 * 300.00559 * 5 4 2
34 34 H 1.08999 * 109.47641 * 180.02562 * 7 6 5
35 35 H 1.08998 * 109.46895 * 299.99778 * 7 6 5
36 36 H 1.08997 * 109.47084 * 59.99818 * 7 6 5
37 37 H 1.09003 * 109.46773 * 299.99805 * 8 6 5
38 38 H 1.08998 * 109.47335 * 59.99882 * 8 6 5
39 39 H 1.09000 * 109.47312 * 180.02562 * 8 6 5
40 40 H 0.96998 * 120.00102 * 0.02562 * 9 6 5
41 41 H 1.08001 * 119.27717 * 180.02562 * 12 11 10
42 42 H 1.08001 * 120.18735 * 179.97438 * 13 12 11
43 43 H 1.08004 * 120.86120 * 179.74915 * 14 13 12
44 44 H 0.97001 * 119.99653 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9955 -0.7661 1.1375
5 6 1.6314 -2.2427 0.9703
6 6 2.1792 -3.0404 2.1554
7 6 1.5690 -2.5087 3.4537
8 6 3.7011 -2.8932 2.2094
9 7 1.8311 -4.4543 1.9950
10 6 2.2221 -5.3742 2.9479
11 7 2.9104 -4.9763 4.0049
12 6 3.3032 -5.8218 4.9390
13 6 3.0120 -7.1753 4.8587
14 6 2.3012 -7.6572 3.7784
15 6 1.8842 -6.7414 2.7907
16 6 1.1502 -7.1773 1.6683
17 1 1.1787 -6.6089 0.7504
18 6 0.3849 -8.3465 1.7437
19 7 0.1209 -8.8818 2.9085
20 14 -0.2599 -9.1431 0.1820
21 1 0.8820 -9.5175 -0.6906
22 1 -1.0354 -10.3605 0.5311
23 1 -1.1383 -8.1850 -0.5361
24 1 -0.3633 0.4512 0.9233
25 1 -0.3634 0.5740 -0.8524
26 1 -0.3634 -1.0252 -0.0709
27 1 3.0828 1.3432 -0.0709
28 1 1.5899 1.9163 -0.8524
29 1 1.7044 1.8723 0.9233
30 1 1.5611 -0.3873 2.0628
31 1 3.0797 -0.6612 1.1756
32 1 2.0658 -2.6214 0.0450
33 1 0.5471 -2.3475 0.9323
34 1 1.9596 -3.0766 4.2981
35 1 1.8284 -1.4567 3.5729
36 1 0.4848 -2.6135 3.4153
37 1 4.1358 -3.2721 1.2843
38 1 3.9605 -1.8413 2.3285
39 1 4.0914 -3.4619 3.0534
40 1 1.3266 -4.7446 1.2190
41 1 3.8630 -5.4514 5.7851
42 1 3.3439 -7.8492 5.6346
43 1 2.0669 -8.7081 3.6936
44 1 -0.4099 -9.6920 2.9607
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001169711841.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:40:26
Heat of formation + Delta-G solvation = 22.304011 kcal
Electronic energy + Delta-G solvation = -22165.972366 eV
Core-core repulsion = 19117.447044 eV
Total energy + Delta-G solvation = -3048.525321 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.185 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.66686 -39.19700 -37.38869 -35.78829 -33.66482 -32.26044 -30.20611 -29.47148
-28.44556 -27.99695 -27.26860 -25.61465 -23.55142 -22.90811 -21.86574 -19.96526
-19.10083 -18.24742 -17.21228 -16.83526 -16.43949 -15.98151 -15.72243 -15.45294
-15.17822 -15.02459 -14.67166 -14.56854 -14.36827 -13.75416 -13.66710 -13.30034
-13.15570 -13.11206 -12.98580 -12.70226 -12.58622 -12.50785 -12.33977 -12.18867
-12.15333 -12.07354 -11.70361 -11.58225 -11.38946 -11.10413 -10.59817 -9.85840
-9.63467 -9.26267 -8.58905 -8.24164 -6.11743 0.98247 1.28408 1.40796
1.50634 1.56087 2.23565 2.72768 2.87793 3.11572 3.86214 3.99295
4.08599 4.14600 4.30332 4.35299 4.43890 4.47082 4.52492 4.65338
4.68064 4.72685 4.78080 4.87452 4.92650 4.93972 5.03018 5.04251
5.07234 5.09088 5.15286 5.21105 5.22714 5.29831 5.39560 5.67665
5.70493 5.87907 5.98144 6.09386 6.14462 6.16266 6.47964 6.83052
6.90222 6.96983 7.24631 7.99694 8.42190
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.017023 B = 0.005106 C = 0.004123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1644.469581 B = 5482.781126 C = 6789.860705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.562 5.562
3 C 0.024 3.976
4 C 0.065 3.935
5 C -0.105 4.105
6 C 0.193 3.807
7 C -0.153 4.153
8 C -0.153 4.153
9 N -0.720 5.720
10 C 0.309 3.691
11 N -0.524 5.524
12 C -0.001 4.001
13 C -0.204 4.204
14 C -0.150 4.150
15 C -0.005 4.005
16 C -0.480 4.480
17 H 0.079 0.921
18 C 0.033 3.967
19 N -0.835 5.835
20 Si 0.979 3.021
21 H -0.264 1.264
22 H -0.274 1.274
23 H -0.259 1.259
24 H 0.026 0.974
25 H 0.078 0.922
26 H 0.063 0.937
27 H 0.072 0.928
28 H 0.077 0.923
29 H 0.028 0.972
30 H 0.041 0.959
31 H 0.083 0.917
32 H 0.067 0.933
33 H 0.062 0.938
34 H 0.060 0.940
35 H 0.072 0.928
36 H 0.033 0.967
37 H 0.039 0.961
38 H 0.073 0.927
39 H 0.060 0.940
40 H 0.399 0.601
41 H 0.148 0.852
42 H 0.114 0.886
43 H 0.108 0.892
44 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.981 13.997 -4.791 14.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.287 5.287
3 C -0.124 4.124
4 C -0.064 4.064
5 C -0.143 4.143
6 C 0.107 3.893
7 C -0.212 4.212
8 C -0.211 4.211
9 N -0.358 5.358
10 C 0.070 3.930
11 N -0.242 5.242
12 C -0.154 4.154
13 C -0.226 4.226
14 C -0.177 4.177
15 C -0.012 4.012
16 C -0.511 4.511
17 H 0.097 0.903
18 C -0.180 4.180
19 N -0.463 5.463
20 Si 0.800 3.200
21 H -0.188 1.188
22 H -0.199 1.199
23 H -0.183 1.183
24 H 0.045 0.955
25 H 0.097 0.903
26 H 0.082 0.918
27 H 0.091 0.909
28 H 0.096 0.904
29 H 0.046 0.954
30 H 0.059 0.941
31 H 0.101 0.899
32 H 0.086 0.914
33 H 0.080 0.920
34 H 0.079 0.921
35 H 0.091 0.909
36 H 0.052 0.948
37 H 0.058 0.942
38 H 0.092 0.908
39 H 0.079 0.921
40 H 0.236 0.764
41 H 0.165 0.835
42 H 0.132 0.868
43 H 0.126 0.874
44 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 1.299 14.610 -4.919 15.470
hybrid contribution -1.093 -1.557 0.126 1.907
sum 0.206 13.052 -4.793 13.906
Atomic orbital electron populations
1.22461 0.87105 1.02383 1.00866 1.61962 1.08559 1.14755 1.43379
1.22422 1.01110 0.87863 1.00992 1.22140 1.00668 0.92130 0.91416
1.21650 1.00752 0.94823 0.97119 1.19993 0.94472 0.80287 0.94598
1.22191 0.99108 1.00802 0.99050 1.22189 0.95439 1.01749 1.01726
1.44090 1.62357 1.04948 1.24381 1.18677 0.97041 0.87223 0.90048
1.66771 1.15740 1.38507 1.03190 1.21978 1.04894 0.89932 0.98559
1.21615 1.04040 0.97130 0.99840 1.21407 1.00622 0.99228 0.96399
1.18292 0.96099 0.90558 0.96257 1.19364 1.25165 1.08351 0.98256
0.90316 1.26628 0.94704 0.96602 1.00093 1.69879 1.30739 1.18719
1.26933 0.85297 0.78694 0.77975 0.78004 1.18808 1.19860 1.18289
0.95523 0.90330 0.91774 0.90905 0.90407 0.95379 0.94137 0.89863
0.91446 0.91979 0.92075 0.90945 0.94767 0.94224 0.90785 0.92060
0.76439 0.83519 0.86791 0.87390 0.90603
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.38 9.32 127.69 1.19 1.57 16
2 N -0.56 -11.78 5.02 -948.87 -4.76 -16.54 16
3 C 0.02 0.39 9.57 127.69 1.22 1.61 16
4 C 0.06 1.45 4.25 86.30 0.37 1.82 16
5 C -0.11 -2.85 4.31 30.59 0.13 -2.72 16
6 C 0.19 6.38 0.83 3.60 0.00 6.38 16
7 C -0.15 -5.07 8.06 71.98 0.58 -4.49 16
8 C -0.15 -4.91 8.05 71.98 0.58 -4.33 16
9 N -0.72 -29.60 5.14 -303.56 -1.56 -31.16 16
10 C 0.31 14.96 6.94 134.05 0.93 15.89 16
11 N -0.52 -24.22 5.46 -191.45 -1.04 -25.27 16
12 C 0.00 -0.03 11.17 84.78 0.95 0.92 16
13 C -0.20 -9.65 10.08 22.32 0.22 -9.42 16
14 C -0.15 -8.02 8.79 22.89 0.20 -7.82 16
15 C 0.00 -0.27 5.60 -21.06 -0.12 -0.39 16
16 C -0.48 -25.00 8.53 23.37 0.20 -24.80 16
17 H 0.08 3.85 6.67 -2.91 -0.02 3.83 16
18 C 0.03 1.64 5.23 85.25 0.45 2.09 16
19 N -0.84 -43.95 10.83 21.83 0.24 -43.72 16
20 Si 0.98 38.15 29.58 68.60 2.03 40.17 16
21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16
22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16
23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16
24 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16
25 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16
26 H 0.06 1.33 6.47 -2.39 -0.02 1.32 16
27 H 0.07 1.10 8.12 -2.38 -0.02 1.08 16
28 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16
29 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16
30 H 0.04 0.90 6.41 -2.38 -0.02 0.89 16
31 H 0.08 1.79 6.35 -2.39 -0.02 1.78 16
32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16
33 H 0.06 1.71 6.55 -2.39 -0.02 1.69 16
34 H 0.06 2.38 5.96 -2.39 -0.01 2.36 16
35 H 0.07 1.96 6.43 -2.39 -0.02 1.94 16
36 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
38 H 0.07 1.92 6.43 -2.39 -0.02 1.91 16
39 H 0.06 2.32 5.96 -2.39 -0.01 2.30 16
40 H 0.40 16.26 6.67 -92.71 -0.62 15.64 16
41 H 0.15 5.56 8.06 -2.91 -0.02 5.53 16
42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16
43 H 0.11 6.05 6.18 -2.91 -0.02 6.03 16
44 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16
Total: -1.00 -58.94 337.66 2.18 -56.77
By element:
Atomic # 1 Polarization: 43.06 SS G_CDS: 0.37 Total: 43.43 kcal
Atomic # 6 Polarization: -30.59 SS G_CDS: 6.90 Total: -23.69 kcal
Atomic # 7 Polarization: -109.55 SS G_CDS: -7.13 Total: -116.68 kcal
Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.17 kcal
Total: -58.94 2.18 -56.77 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169711841.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.071 kcal
(2) G-P(sol) polarization free energy of solvation -58.944 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.767 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.304 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds