Wall clock time and date at job start Mon Mar 30 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00140 * 2 1 4 4 C 1.46901 * 111.00176 * 123.95852 * 2 1 3 5 5 C 1.52998 * 109.47351 * 66.03915 * 4 2 1 6 6 C 1.52995 * 109.47159 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47160 * 60.00550 * 6 5 4 8 8 C 1.53000 * 109.47275 * 300.00544 * 6 5 4 9 9 N 1.46499 * 109.47274 * 180.02562 * 6 5 4 10 10 C 1.38094 * 120.00487 * 179.97438 * 9 6 5 11 11 N 1.32266 * 119.89911 * 0.02562 * 10 9 6 12 12 C 1.31969 * 121.86259 * 179.97438 * 11 10 9 13 13 C 1.38679 * 121.44849 * 359.96983 * 12 11 10 14 14 C 1.38002 * 119.62771 * 0.28465 * 13 12 11 15 15 C 1.41004 * 118.28113 * 359.50224 * 14 13 12 16 16 C 1.41017 * 120.70923 * 180.26483 * 15 14 13 17 17 H 1.08003 * 120.00443 * 205.14945 * 16 15 14 18 18 C 1.39945 * 119.99873 * 25.14873 * 16 15 14 19 19 N 1.30875 * 120.00032 * 14.24180 * 18 16 15 20 20 Si 1.86799 * 120.00099 * 194.24080 * 18 16 15 21 21 H 1.48508 * 109.47089 * 60.00067 * 20 18 16 22 22 H 1.48504 * 109.47030 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47207 * 300.00345 * 20 18 16 24 24 H 1.09000 * 109.46977 * 296.04337 * 1 2 3 25 25 H 1.09002 * 109.47424 * 56.04716 * 1 2 3 26 26 H 1.08997 * 109.47483 * 176.04399 * 1 2 3 27 27 H 1.09006 * 109.47326 * 183.95477 * 3 2 1 28 28 H 1.08993 * 109.47405 * 303.95332 * 3 2 1 29 29 H 1.08996 * 109.47031 * 63.95490 * 3 2 1 30 30 H 1.09010 * 109.46608 * 306.04418 * 4 2 1 31 31 H 1.08997 * 109.47313 * 186.04540 * 4 2 1 32 32 H 1.09010 * 109.46854 * 60.00653 * 5 4 2 33 33 H 1.08997 * 109.47422 * 300.00559 * 5 4 2 34 34 H 1.08999 * 109.47641 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.46895 * 299.99778 * 7 6 5 36 36 H 1.08997 * 109.47084 * 59.99818 * 7 6 5 37 37 H 1.09003 * 109.46773 * 299.99805 * 8 6 5 38 38 H 1.08998 * 109.47335 * 59.99882 * 8 6 5 39 39 H 1.09000 * 109.47312 * 180.02562 * 8 6 5 40 40 H 0.96998 * 120.00102 * 0.02562 * 9 6 5 41 41 H 1.08001 * 119.27717 * 180.02562 * 12 11 10 42 42 H 1.08001 * 120.18735 * 179.97438 * 13 12 11 43 43 H 1.08004 * 120.86120 * 179.74915 * 14 13 12 44 44 H 0.97001 * 119.99653 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6314 -2.2427 0.9703 6 6 2.1792 -3.0404 2.1554 7 6 1.5690 -2.5087 3.4537 8 6 3.7011 -2.8932 2.2094 9 7 1.8311 -4.4543 1.9950 10 6 2.2221 -5.3742 2.9479 11 7 2.9104 -4.9763 4.0049 12 6 3.3032 -5.8218 4.9390 13 6 3.0120 -7.1753 4.8587 14 6 2.3012 -7.6572 3.7784 15 6 1.8842 -6.7414 2.7907 16 6 1.1502 -7.1773 1.6683 17 1 1.1787 -6.6089 0.7504 18 6 0.3849 -8.3465 1.7437 19 7 0.1209 -8.8818 2.9085 20 14 -0.2599 -9.1431 0.1820 21 1 0.8820 -9.5175 -0.6906 22 1 -1.0354 -10.3605 0.5311 23 1 -1.1383 -8.1850 -0.5361 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0709 28 1 1.5899 1.9163 -0.8524 29 1 1.7044 1.8723 0.9233 30 1 1.5611 -0.3873 2.0628 31 1 3.0797 -0.6612 1.1756 32 1 2.0658 -2.6214 0.0450 33 1 0.5471 -2.3475 0.9323 34 1 1.9596 -3.0766 4.2981 35 1 1.8284 -1.4567 3.5729 36 1 0.4848 -2.6135 3.4153 37 1 4.1358 -3.2721 1.2843 38 1 3.9605 -1.8413 2.3285 39 1 4.0914 -3.4619 3.0534 40 1 1.3266 -4.7446 1.2190 41 1 3.8630 -5.4514 5.7851 42 1 3.3439 -7.8492 5.6346 43 1 2.0669 -8.7081 3.6936 44 1 -0.4099 -9.6920 2.9607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169711841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:26 Heat of formation + Delta-G solvation = 22.304011 kcal Electronic energy + Delta-G solvation = -22165.972366 eV Core-core repulsion = 19117.447044 eV Total energy + Delta-G solvation = -3048.525321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66686 -39.19700 -37.38869 -35.78829 -33.66482 -32.26044 -30.20611 -29.47148 -28.44556 -27.99695 -27.26860 -25.61465 -23.55142 -22.90811 -21.86574 -19.96526 -19.10083 -18.24742 -17.21228 -16.83526 -16.43949 -15.98151 -15.72243 -15.45294 -15.17822 -15.02459 -14.67166 -14.56854 -14.36827 -13.75416 -13.66710 -13.30034 -13.15570 -13.11206 -12.98580 -12.70226 -12.58622 -12.50785 -12.33977 -12.18867 -12.15333 -12.07354 -11.70361 -11.58225 -11.38946 -11.10413 -10.59817 -9.85840 -9.63467 -9.26267 -8.58905 -8.24164 -6.11743 0.98247 1.28408 1.40796 1.50634 1.56087 2.23565 2.72768 2.87793 3.11572 3.86214 3.99295 4.08599 4.14600 4.30332 4.35299 4.43890 4.47082 4.52492 4.65338 4.68064 4.72685 4.78080 4.87452 4.92650 4.93972 5.03018 5.04251 5.07234 5.09088 5.15286 5.21105 5.22714 5.29831 5.39560 5.67665 5.70493 5.87907 5.98144 6.09386 6.14462 6.16266 6.47964 6.83052 6.90222 6.96983 7.24631 7.99694 8.42190 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.005106 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.469581 B = 5482.781126 C = 6789.860705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.562 5.562 3 C 0.024 3.976 4 C 0.065 3.935 5 C -0.105 4.105 6 C 0.193 3.807 7 C -0.153 4.153 8 C -0.153 4.153 9 N -0.720 5.720 10 C 0.309 3.691 11 N -0.524 5.524 12 C -0.001 4.001 13 C -0.204 4.204 14 C -0.150 4.150 15 C -0.005 4.005 16 C -0.480 4.480 17 H 0.079 0.921 18 C 0.033 3.967 19 N -0.835 5.835 20 Si 0.979 3.021 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.259 1.259 24 H 0.026 0.974 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.399 0.601 41 H 0.148 0.852 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 13.997 -4.791 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.124 4.124 4 C -0.064 4.064 5 C -0.143 4.143 6 C 0.107 3.893 7 C -0.212 4.212 8 C -0.211 4.211 9 N -0.358 5.358 10 C 0.070 3.930 11 N -0.242 5.242 12 C -0.154 4.154 13 C -0.226 4.226 14 C -0.177 4.177 15 C -0.012 4.012 16 C -0.511 4.511 17 H 0.097 0.903 18 C -0.180 4.180 19 N -0.463 5.463 20 Si 0.800 3.200 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.183 1.183 24 H 0.045 0.955 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.236 0.764 41 H 0.165 0.835 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.299 14.610 -4.919 15.470 hybrid contribution -1.093 -1.557 0.126 1.907 sum 0.206 13.052 -4.793 13.906 Atomic orbital electron populations 1.22461 0.87105 1.02383 1.00866 1.61962 1.08559 1.14755 1.43379 1.22422 1.01110 0.87863 1.00992 1.22140 1.00668 0.92130 0.91416 1.21650 1.00752 0.94823 0.97119 1.19993 0.94472 0.80287 0.94598 1.22191 0.99108 1.00802 0.99050 1.22189 0.95439 1.01749 1.01726 1.44090 1.62357 1.04948 1.24381 1.18677 0.97041 0.87223 0.90048 1.66771 1.15740 1.38507 1.03190 1.21978 1.04894 0.89932 0.98559 1.21615 1.04040 0.97130 0.99840 1.21407 1.00622 0.99228 0.96399 1.18292 0.96099 0.90558 0.96257 1.19364 1.25165 1.08351 0.98256 0.90316 1.26628 0.94704 0.96602 1.00093 1.69879 1.30739 1.18719 1.26933 0.85297 0.78694 0.77975 0.78004 1.18808 1.19860 1.18289 0.95523 0.90330 0.91774 0.90905 0.90407 0.95379 0.94137 0.89863 0.91446 0.91979 0.92075 0.90945 0.94767 0.94224 0.90785 0.92060 0.76439 0.83519 0.86791 0.87390 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.32 127.69 1.19 1.57 16 2 N -0.56 -11.78 5.02 -948.87 -4.76 -16.54 16 3 C 0.02 0.39 9.57 127.69 1.22 1.61 16 4 C 0.06 1.45 4.25 86.30 0.37 1.82 16 5 C -0.11 -2.85 4.31 30.59 0.13 -2.72 16 6 C 0.19 6.38 0.83 3.60 0.00 6.38 16 7 C -0.15 -5.07 8.06 71.98 0.58 -4.49 16 8 C -0.15 -4.91 8.05 71.98 0.58 -4.33 16 9 N -0.72 -29.60 5.14 -303.56 -1.56 -31.16 16 10 C 0.31 14.96 6.94 134.05 0.93 15.89 16 11 N -0.52 -24.22 5.46 -191.45 -1.04 -25.27 16 12 C 0.00 -0.03 11.17 84.78 0.95 0.92 16 13 C -0.20 -9.65 10.08 22.32 0.22 -9.42 16 14 C -0.15 -8.02 8.79 22.89 0.20 -7.82 16 15 C 0.00 -0.27 5.60 -21.06 -0.12 -0.39 16 16 C -0.48 -25.00 8.53 23.37 0.20 -24.80 16 17 H 0.08 3.85 6.67 -2.91 -0.02 3.83 16 18 C 0.03 1.64 5.23 85.25 0.45 2.09 16 19 N -0.84 -43.95 10.83 21.83 0.24 -43.72 16 20 Si 0.98 38.15 29.58 68.60 2.03 40.17 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 26 H 0.06 1.33 6.47 -2.39 -0.02 1.32 16 27 H 0.07 1.10 8.12 -2.38 -0.02 1.08 16 28 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.04 0.90 6.41 -2.38 -0.02 0.89 16 31 H 0.08 1.79 6.35 -2.39 -0.02 1.78 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.06 1.71 6.55 -2.39 -0.02 1.69 16 34 H 0.06 2.38 5.96 -2.39 -0.01 2.36 16 35 H 0.07 1.96 6.43 -2.39 -0.02 1.94 16 36 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.92 6.43 -2.39 -0.02 1.91 16 39 H 0.06 2.32 5.96 -2.39 -0.01 2.30 16 40 H 0.40 16.26 6.67 -92.71 -0.62 15.64 16 41 H 0.15 5.56 8.06 -2.91 -0.02 5.53 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.11 6.05 6.18 -2.91 -0.02 6.03 16 44 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 Total: -1.00 -58.94 337.66 2.18 -56.77 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: 0.37 Total: 43.43 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 6.90 Total: -23.69 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -7.13 Total: -116.68 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.17 kcal Total: -58.94 2.18 -56.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169711841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.071 kcal (2) G-P(sol) polarization free energy of solvation -58.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds