Wall clock time and date at job start Mon Mar 30 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00232 * 2 1 4 4 C 1.46895 * 110.99879 * 123.95919 * 2 1 3 5 5 C 1.52994 * 109.47628 * 66.04395 * 4 2 1 6 6 C 1.52997 * 109.47572 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47174 * 300.00043 * 6 5 4 8 8 C 1.53009 * 109.47154 * 60.00284 * 6 5 4 9 9 N 1.46505 * 109.47398 * 179.97438 * 6 5 4 10 10 C 1.39718 * 120.00131 * 184.56173 * 9 6 5 11 11 C 1.39339 * 120.36434 * 354.20986 * 10 9 6 12 12 N 1.31986 * 121.20795 * 179.72346 * 11 10 9 13 13 C 1.31493 * 122.05622 * 0.59534 * 12 11 10 14 14 C 1.40765 * 120.56471 * 359.66969 * 13 12 11 15 15 C 1.41430 * 120.61970 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00384 * 334.68170 * 15 14 13 17 17 C 1.39932 * 119.99333 * 154.67917 * 15 14 13 18 18 N 1.30828 * 120.00637 * 4.78500 * 17 15 14 19 19 Si 1.86800 * 119.99655 * 184.78897 * 17 15 14 20 20 H 1.48503 * 109.47502 * 59.99473 * 19 17 15 21 21 H 1.48505 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46910 * 299.99902 * 19 17 15 23 23 C 1.38654 * 120.36597 * 174.48786 * 10 9 6 24 24 H 1.08998 * 109.46748 * 296.04206 * 1 2 3 25 25 H 1.08996 * 109.47181 * 56.04296 * 1 2 3 26 26 H 1.09000 * 109.47301 * 176.04541 * 1 2 3 27 27 H 1.08993 * 109.47172 * 183.95029 * 3 2 1 28 28 H 1.08995 * 109.47077 * 303.95582 * 3 2 1 29 29 H 1.09007 * 109.46637 * 63.95541 * 3 2 1 30 30 H 1.08999 * 109.47315 * 306.04213 * 4 2 1 31 31 H 1.09007 * 109.47383 * 186.04649 * 4 2 1 32 32 H 1.09007 * 109.47391 * 300.00227 * 5 4 2 33 33 H 1.08998 * 109.47386 * 59.99835 * 5 4 2 34 34 H 1.08998 * 109.47196 * 55.07777 * 7 6 5 35 35 H 1.09000 * 109.47220 * 175.08197 * 7 6 5 36 36 H 1.08993 * 109.46895 * 295.07961 * 7 6 5 37 37 H 1.08998 * 109.47228 * 64.95651 * 8 6 5 38 38 H 1.08999 * 109.47123 * 184.96110 * 8 6 5 39 39 H 1.08999 * 109.46483 * 304.96020 * 8 6 5 40 40 H 0.97001 * 119.99591 * 4.56268 * 9 6 5 41 41 H 1.08002 * 119.39267 * 0.02562 * 11 10 9 42 42 H 1.08003 * 119.71515 * 179.70314 * 13 12 11 43 43 H 0.96997 * 120.00141 * 179.97438 * 18 17 15 44 44 H 1.08005 * 120.92678 * 359.95625 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6315 -2.2426 0.9702 6 6 2.1803 -3.0406 2.1547 7 6 3.7023 -2.8934 2.2074 8 6 1.5711 -2.5092 3.4538 9 7 1.8312 -4.4544 1.9948 10 6 2.1432 -5.3695 3.0035 11 6 2.8914 -4.9708 4.1093 12 7 3.1911 -5.8199 5.0744 13 6 2.8129 -7.0787 5.0387 14 6 2.0582 -7.5691 3.9564 15 6 1.6504 -8.9227 3.9171 16 1 2.2147 -9.6724 4.4517 17 6 0.5157 -9.2905 3.1855 18 7 -0.1136 -8.4001 2.4625 19 14 -0.1007 -11.0530 3.2413 20 1 -0.4434 -11.4136 4.6405 21 1 -1.3079 -11.1826 2.3862 22 1 0.9598 -11.9643 2.7409 23 6 1.7166 -6.6856 2.9124 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8723 0.9234 30 1 1.5612 -0.3874 2.0627 31 1 3.0798 -0.6612 1.1756 32 1 0.5471 -2.3476 0.9322 33 1 2.0657 -2.6214 0.0450 34 1 3.9641 -1.8358 2.2386 35 1 4.0845 -3.3888 3.0999 36 1 4.1424 -3.3506 1.3214 37 1 0.4969 -2.6941 3.4536 38 1 2.0272 -3.0174 4.3034 39 1 1.7553 -1.4376 3.5296 40 1 1.3835 -4.7552 1.1886 41 1 3.2282 -3.9471 4.1803 42 1 3.0833 -7.7420 5.8470 43 1 -0.8999 -8.6552 1.9551 44 1 1.1385 -7.0244 2.0654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169718320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:30 Heat of formation + Delta-G solvation = 42.387349 kcal Electronic energy + Delta-G solvation = -21870.186378 eV Core-core repulsion = 18822.531936 eV Total energy + Delta-G solvation = -3047.654443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.30088 -37.93930 -36.44151 -33.92747 -32.44441 -30.21699 -28.92979 -27.91165 -27.71991 -26.95732 -25.47783 -24.59879 -21.80689 -21.58809 -20.51579 -18.96633 -17.18358 -16.50639 -15.67695 -15.60581 -15.33085 -15.00843 -14.61618 -14.45967 -14.15740 -13.58851 -13.31213 -13.23148 -12.58385 -12.43133 -12.37899 -12.12642 -11.88732 -11.82932 -11.68999 -11.47822 -11.35580 -11.24810 -11.04318 -10.91698 -10.82055 -10.65600 -10.49954 -10.09614 -9.66446 -9.38376 -9.30668 -8.51411 -8.04591 -7.59796 -6.58904 -6.27768 -4.46955 2.80400 3.05744 3.08709 3.20285 3.32461 3.73748 3.92501 4.22193 4.74540 4.86673 4.95206 5.05750 5.16043 5.21368 5.33536 5.39458 5.44097 5.55770 5.56098 5.64089 5.74928 5.83554 5.93193 5.98353 6.02904 6.07490 6.18009 6.24317 6.28637 6.58048 6.69223 6.77297 6.79139 6.85549 6.88008 6.96901 7.25884 7.28390 7.69441 7.80910 8.16556 8.29220 8.57990 8.74844 8.87970 8.97215 9.81515 10.19864 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.003883 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.329433 B = 7210.022570 C = 8012.551814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.055 3.945 5 C -0.114 4.114 6 C 0.189 3.811 7 C -0.175 4.175 8 C -0.176 4.176 9 N -0.746 5.746 10 C 0.175 3.825 11 C -0.106 4.106 12 N -0.453 5.453 13 C -0.051 4.051 14 C 0.083 3.917 15 C -0.443 4.443 16 H 0.078 0.922 17 C 0.068 3.932 18 N -0.801 5.801 19 Si 0.918 3.082 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.214 4.214 24 H 0.025 0.975 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.389 0.611 41 H 0.135 0.865 42 H 0.120 0.880 43 H 0.277 0.723 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 13.567 -5.825 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.124 4.124 4 C -0.073 4.073 5 C -0.152 4.152 6 C 0.101 3.899 7 C -0.233 4.233 8 C -0.234 4.234 9 N -0.379 5.379 10 C 0.073 3.927 11 C -0.265 4.265 12 N -0.161 5.161 13 C -0.215 4.215 14 C 0.078 3.922 15 C -0.475 4.475 16 H 0.096 0.904 17 C -0.148 4.148 18 N -0.428 5.428 19 Si 0.743 3.257 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.245 4.245 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.223 0.777 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.450 13.843 -5.642 14.955 hybrid contribution -1.432 -0.766 -0.312 1.653 sum -0.982 13.077 -5.954 14.402 Atomic orbital electron populations 1.22446 0.87497 1.02637 1.00209 1.61972 1.08027 1.13578 1.43697 1.22369 1.00783 0.88925 1.00303 1.22299 1.00471 0.93452 0.91110 1.21720 1.01273 0.93784 0.98409 1.19879 0.93753 0.82223 0.94084 1.22598 0.96109 1.00938 1.03661 1.22588 1.01546 1.00038 0.99265 1.44498 1.68295 1.04537 1.20562 1.18750 0.94403 0.90279 0.89237 1.21955 1.10589 0.99056 0.94883 1.66895 1.18387 1.04180 1.26595 1.22355 1.08066 0.91645 0.99448 1.18334 0.89848 0.93948 0.90053 1.19537 1.08661 0.93582 1.25670 0.90374 1.25956 0.96220 0.99441 0.93139 1.69669 1.16481 1.34524 1.22158 0.86204 0.78518 0.81774 0.79212 1.18982 1.20402 1.18973 1.21927 1.08789 0.90801 1.02952 0.95690 0.91649 0.90882 0.91364 0.91520 0.95776 0.94161 0.90228 0.91539 0.90808 0.92717 0.90420 0.92542 0.92701 0.90017 0.92824 0.77690 0.84800 0.86213 0.91154 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 60.07 0.56 0.75 16 2 N -0.55 -5.78 5.02 -251.27 -1.26 -7.04 16 3 C 0.02 0.21 9.57 60.06 0.57 0.78 16 4 C 0.05 0.60 4.27 -3.83 -0.02 0.58 16 5 C -0.11 -1.42 4.31 -26.74 -0.12 -1.54 16 6 C 0.19 2.82 0.83 -131.81 -0.11 2.71 16 7 C -0.17 -2.54 8.13 37.16 0.30 -2.24 16 8 C -0.18 -2.68 7.98 37.16 0.30 -2.38 16 9 N -0.75 -13.81 5.25 -45.93 -0.24 -14.05 16 10 C 0.17 4.01 6.24 -83.70 -0.52 3.49 16 11 C -0.11 -2.47 8.26 -17.08 -0.14 -2.61 16 12 N -0.45 -11.48 10.33 -12.37 -0.13 -11.61 16 13 C -0.05 -1.33 10.97 -16.74 -0.18 -1.51 16 14 C 0.08 2.25 5.66 -106.70 -0.60 1.65 16 15 C -0.44 -11.71 9.12 -37.73 -0.34 -12.05 16 16 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 17 C 0.07 1.69 5.45 -17.35 -0.09 1.59 16 18 N -0.80 -20.28 10.11 55.55 0.56 -19.72 16 19 Si 0.92 18.64 29.56 -169.99 -5.03 13.62 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 23 C -0.21 -5.55 8.79 -38.40 -0.34 -5.88 16 24 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 26 H 0.07 0.73 6.47 -51.93 -0.34 0.39 16 27 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 28 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.45 6.30 -51.93 -0.33 0.12 16 31 H 0.08 0.85 6.24 -51.93 -0.32 0.52 16 32 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.65 6.18 -51.93 -0.32 0.33 16 35 H 0.08 1.29 4.84 -51.93 -0.25 1.04 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.43 4.69 -51.93 -0.24 1.19 16 39 H 0.05 0.67 6.18 -51.93 -0.32 0.35 16 40 H 0.39 6.94 8.50 -40.82 -0.35 6.59 16 41 H 0.14 2.77 3.11 -52.49 -0.16 2.60 16 42 H 0.12 2.91 8.06 -52.48 -0.42 2.49 16 43 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 44 H 0.15 4.07 5.47 -52.48 -0.29 3.78 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -28.14 334.30 -8.40 -36.53 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -6.61 Total: 13.88 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -0.73 Total: -16.65 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -1.07 Total: -52.42 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.14 -8.40 -36.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169718320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.922 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds