Wall clock time and date at job start Mon Mar 30 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00232 * 2 1 4 4 C 1.46895 * 110.99879 * 123.95919 * 2 1 3 5 5 C 1.52994 * 109.47628 * 66.04395 * 4 2 1 6 6 C 1.52997 * 109.47572 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47174 * 300.00043 * 6 5 4 8 8 C 1.53009 * 109.47154 * 60.00284 * 6 5 4 9 9 N 1.46505 * 109.47398 * 179.97438 * 6 5 4 10 10 C 1.39718 * 120.00131 * 184.56173 * 9 6 5 11 11 C 1.39339 * 120.36434 * 354.20986 * 10 9 6 12 12 N 1.31986 * 121.20795 * 179.72346 * 11 10 9 13 13 C 1.31493 * 122.05622 * 0.59534 * 12 11 10 14 14 C 1.40765 * 120.56471 * 359.66969 * 13 12 11 15 15 C 1.41430 * 120.61970 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00384 * 334.68170 * 15 14 13 17 17 C 1.39932 * 119.99333 * 154.67917 * 15 14 13 18 18 N 1.30828 * 120.00637 * 4.78500 * 17 15 14 19 19 Si 1.86800 * 119.99655 * 184.78897 * 17 15 14 20 20 H 1.48503 * 109.47502 * 59.99473 * 19 17 15 21 21 H 1.48505 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46910 * 299.99902 * 19 17 15 23 23 C 1.38654 * 120.36597 * 174.48786 * 10 9 6 24 24 H 1.08998 * 109.46748 * 296.04206 * 1 2 3 25 25 H 1.08996 * 109.47181 * 56.04296 * 1 2 3 26 26 H 1.09000 * 109.47301 * 176.04541 * 1 2 3 27 27 H 1.08993 * 109.47172 * 183.95029 * 3 2 1 28 28 H 1.08995 * 109.47077 * 303.95582 * 3 2 1 29 29 H 1.09007 * 109.46637 * 63.95541 * 3 2 1 30 30 H 1.08999 * 109.47315 * 306.04213 * 4 2 1 31 31 H 1.09007 * 109.47383 * 186.04649 * 4 2 1 32 32 H 1.09007 * 109.47391 * 300.00227 * 5 4 2 33 33 H 1.08998 * 109.47386 * 59.99835 * 5 4 2 34 34 H 1.08998 * 109.47196 * 55.07777 * 7 6 5 35 35 H 1.09000 * 109.47220 * 175.08197 * 7 6 5 36 36 H 1.08993 * 109.46895 * 295.07961 * 7 6 5 37 37 H 1.08998 * 109.47228 * 64.95651 * 8 6 5 38 38 H 1.08999 * 109.47123 * 184.96110 * 8 6 5 39 39 H 1.08999 * 109.46483 * 304.96020 * 8 6 5 40 40 H 0.97001 * 119.99591 * 4.56268 * 9 6 5 41 41 H 1.08002 * 119.39267 * 0.02562 * 11 10 9 42 42 H 1.08003 * 119.71515 * 179.70314 * 13 12 11 43 43 H 0.96997 * 120.00141 * 179.97438 * 18 17 15 44 44 H 1.08005 * 120.92678 * 359.95625 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6315 -2.2426 0.9702 6 6 2.1803 -3.0406 2.1547 7 6 3.7023 -2.8934 2.2074 8 6 1.5711 -2.5092 3.4538 9 7 1.8312 -4.4544 1.9948 10 6 2.1432 -5.3695 3.0035 11 6 2.8914 -4.9708 4.1093 12 7 3.1911 -5.8199 5.0744 13 6 2.8129 -7.0787 5.0387 14 6 2.0582 -7.5691 3.9564 15 6 1.6504 -8.9227 3.9171 16 1 2.2147 -9.6724 4.4517 17 6 0.5157 -9.2905 3.1855 18 7 -0.1136 -8.4001 2.4625 19 14 -0.1007 -11.0530 3.2413 20 1 -0.4434 -11.4136 4.6405 21 1 -1.3079 -11.1826 2.3862 22 1 0.9598 -11.9643 2.7409 23 6 1.7166 -6.6856 2.9124 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8723 0.9234 30 1 1.5612 -0.3874 2.0627 31 1 3.0798 -0.6612 1.1756 32 1 0.5471 -2.3476 0.9322 33 1 2.0657 -2.6214 0.0450 34 1 3.9641 -1.8358 2.2386 35 1 4.0845 -3.3888 3.0999 36 1 4.1424 -3.3506 1.3214 37 1 0.4969 -2.6941 3.4536 38 1 2.0272 -3.0174 4.3034 39 1 1.7553 -1.4376 3.5296 40 1 1.3835 -4.7552 1.1886 41 1 3.2282 -3.9471 4.1803 42 1 3.0833 -7.7420 5.8470 43 1 -0.8999 -8.6552 1.9551 44 1 1.1385 -7.0244 2.0654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169718320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:29 Heat of formation + Delta-G solvation = 24.167359 kcal Electronic energy + Delta-G solvation = -21870.976456 eV Core-core repulsion = 18822.531936 eV Total energy + Delta-G solvation = -3048.444521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82234 -39.28417 -37.64361 -35.82712 -33.96019 -32.07994 -30.09161 -29.57183 -28.49243 -28.14710 -27.34610 -25.64379 -23.47791 -23.04853 -21.97140 -20.26760 -19.02441 -18.04228 -17.13730 -17.03206 -16.50171 -16.47145 -15.96389 -15.52210 -15.22538 -15.08456 -14.85692 -14.57239 -13.94028 -13.89802 -13.65924 -13.34643 -13.18730 -13.15040 -12.93787 -12.71391 -12.67252 -12.54615 -12.41928 -12.31279 -12.21308 -12.02611 -11.81343 -11.66131 -11.31418 -11.06950 -10.96470 -10.00554 -9.57304 -9.27878 -8.45833 -8.02207 -6.46271 0.98256 1.28751 1.40256 1.51733 1.58477 2.21988 2.64686 2.84654 3.07068 3.81598 3.88537 3.95831 4.11501 4.22145 4.30192 4.33956 4.39518 4.50395 4.57714 4.68990 4.71705 4.75370 4.77114 4.79181 4.92608 4.97991 4.99831 5.02556 5.03965 5.06887 5.12738 5.18249 5.30071 5.36079 5.47474 5.48784 5.80712 5.95478 6.08338 6.12000 6.20938 6.41410 6.80289 6.90508 6.95289 7.15357 7.86066 8.34210 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026129 B = 0.003883 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.329433 B = 7210.022570 C = 8012.551814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.562 5.562 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.102 4.102 6 C 0.184 3.816 7 C -0.170 4.170 8 C -0.171 4.171 9 N -0.738 5.738 10 C 0.186 3.814 11 C -0.107 4.107 12 N -0.463 5.463 13 C -0.080 4.080 14 C 0.058 3.942 15 C -0.477 4.477 16 H 0.079 0.921 17 C 0.028 3.972 18 N -0.824 5.824 19 Si 0.993 3.007 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.243 4.243 24 H 0.026 0.974 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.163 0.837 42 H 0.125 0.875 43 H 0.285 0.715 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 14.973 -6.771 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.286 5.286 3 C -0.124 4.124 4 C -0.068 4.068 5 C -0.140 4.140 6 C 0.098 3.902 7 C -0.228 4.228 8 C -0.229 4.229 9 N -0.370 5.370 10 C 0.082 3.918 11 C -0.267 4.267 12 N -0.170 5.170 13 C -0.243 4.243 14 C 0.053 3.947 15 C -0.508 4.508 16 H 0.097 0.903 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.813 3.187 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.274 4.274 24 H 0.045 0.955 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.227 0.773 41 H 0.179 0.821 42 H 0.143 0.857 43 H 0.096 0.904 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.140 15.289 -6.603 16.654 hybrid contribution -1.331 -1.026 -0.092 1.683 sum -1.191 14.263 -6.695 15.801 Atomic orbital electron populations 1.22464 0.87143 1.02391 1.00863 1.61961 1.08504 1.14770 1.43377 1.22426 1.01158 0.87869 1.00984 1.22220 1.00947 0.92102 0.91557 1.21590 1.00914 0.94666 0.96839 1.20156 0.94472 0.80265 0.95345 1.22533 0.95156 1.02821 1.02298 1.22526 1.00493 1.01845 0.98061 1.44673 1.67266 1.05604 1.19433 1.18758 0.93037 0.90075 0.89920 1.22488 1.09918 0.99966 0.94310 1.66901 1.18598 1.04140 1.27394 1.22448 1.09550 0.92293 1.00001 1.18668 0.90445 0.94862 0.90725 1.19815 1.10065 0.93688 1.27221 0.90257 1.26847 0.95695 1.03894 0.92138 1.69736 1.16733 1.36439 1.22161 0.85087 0.78198 0.76048 0.79342 1.18689 1.19184 1.18316 1.21928 1.10286 0.92265 1.02939 0.95504 0.90480 0.91688 0.90797 0.90545 0.95351 0.93890 0.89474 0.91786 0.91045 0.89479 0.92609 0.92872 0.93802 0.92386 0.89633 0.77345 0.82053 0.85733 0.90393 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.32 127.69 1.19 1.52 16 2 N -0.56 -10.29 5.02 -948.87 -4.76 -15.05 16 3 C 0.02 0.33 9.57 127.69 1.22 1.55 16 4 C 0.06 1.13 4.27 86.30 0.37 1.50 16 5 C -0.10 -2.33 4.31 30.59 0.13 -2.20 16 6 C 0.18 5.20 0.83 3.60 0.00 5.20 16 7 C -0.17 -4.57 8.13 71.98 0.59 -3.99 16 8 C -0.17 -4.90 7.98 71.99 0.57 -4.33 16 9 N -0.74 -27.02 5.25 -299.21 -1.57 -28.59 16 10 C 0.19 8.65 6.24 38.25 0.24 8.89 16 11 C -0.11 -5.00 8.26 84.93 0.70 -4.30 16 12 N -0.46 -23.88 10.33 -193.04 -1.99 -25.88 16 13 C -0.08 -4.31 10.97 85.36 0.94 -3.38 16 14 C 0.06 3.25 5.66 -21.21 -0.12 3.13 16 15 C -0.48 -26.00 9.12 23.47 0.21 -25.79 16 16 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 17 C 0.03 1.38 5.45 85.25 0.46 1.85 16 18 N -0.82 -42.33 10.11 21.82 0.22 -42.11 16 19 Si 0.99 38.14 29.56 68.60 2.03 40.17 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 23 C -0.24 -12.99 8.79 23.04 0.20 -12.79 16 24 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.08 1.10 8.12 -2.39 -0.02 1.08 16 26 H 0.06 1.19 6.47 -2.39 -0.02 1.17 16 27 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 29 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.04 0.80 6.30 -2.39 -0.02 0.78 16 31 H 0.09 1.53 6.24 -2.38 -0.01 1.51 16 32 H 0.06 1.52 6.55 -2.38 -0.02 1.50 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.78 6.18 -2.39 -0.01 1.76 16 35 H 0.06 1.76 4.84 -2.39 -0.01 1.75 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.95 4.69 -2.39 -0.01 1.94 16 39 H 0.09 1.89 6.18 -2.39 -0.01 1.88 16 40 H 0.39 13.90 8.50 -92.71 -0.79 13.11 16 41 H 0.16 6.55 3.11 -2.91 -0.01 6.54 16 42 H 0.13 6.35 8.06 -2.91 -0.02 6.32 16 43 H 0.28 13.27 8.30 -92.71 -0.77 12.50 16 44 H 0.14 7.84 5.47 -2.91 -0.02 7.83 16 Total: -1.00 -61.71 334.30 0.86 -60.85 By element: Atomic # 1 Polarization: 43.51 SS G_CDS: 0.22 Total: 43.73 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 6.71 Total: -33.11 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -8.11 Total: -111.64 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -61.71 0.86 -60.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169718320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.016 kcal (2) G-P(sol) polarization free energy of solvation -61.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds