Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99953 * 2 1 4 4 C 1.52998 * 109.47498 * 66.04309 * 3 2 1 5 5 N 1.46893 * 109.47138 * 179.97438 * 4 3 2 6 6 C 1.46896 * 110.99724 * 236.04133 * 2 1 3 7 7 C 1.52997 * 109.47306 * 293.95314 * 6 2 1 8 8 N 1.46506 * 109.47289 * 180.02562 * 7 6 2 9 9 C 1.39668 * 120.00181 * 180.02562 * 8 7 6 10 10 C 1.38907 * 120.07584 * 359.71907 * 9 8 7 11 11 C 1.38108 * 119.92754 * 179.77093 * 10 9 8 12 12 C 1.38283 * 120.07138 * 0.50866 * 11 10 9 13 13 C 1.50700 * 119.92567 * 179.72344 * 12 11 10 14 14 C 1.50699 * 109.47004 * 270.02519 * 13 12 11 15 15 H 1.08005 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00044 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00216 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99929 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47154 * 90.00290 * 18 16 14 20 20 H 1.48501 * 109.47175 * 210.00420 * 18 16 14 21 21 H 1.48499 * 109.47259 * 329.99815 * 18 16 14 22 22 C 1.38292 * 120.15211 * 359.74911 * 12 11 10 23 23 C 1.38103 * 120.06781 * 359.97438 * 22 12 11 24 24 H 1.08999 * 109.47278 * 183.95882 * 1 2 3 25 25 H 1.08998 * 109.47245 * 303.95714 * 1 2 3 26 26 H 1.08995 * 109.46863 * 63.95703 * 1 2 3 27 27 H 1.08999 * 109.46694 * 186.04830 * 3 2 1 28 28 H 1.09005 * 109.47039 * 306.04080 * 3 2 1 29 29 H 1.09004 * 109.46875 * 300.00101 * 4 3 2 30 30 H 1.09004 * 109.46647 * 59.99884 * 4 3 2 31 31 H 1.00908 * 111.00161 * 180.02562 * 5 4 3 32 32 H 1.00897 * 111.00413 * 303.95604 * 5 4 3 33 33 H 1.09001 * 109.46881 * 173.95705 * 6 2 1 34 34 H 1.08996 * 109.47393 * 53.95385 * 6 2 1 35 35 H 1.09001 * 109.47289 * 60.00085 * 7 6 2 36 36 H 1.09004 * 109.47261 * 300.00341 * 7 6 2 37 37 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 38 38 H 1.08004 * 120.03686 * 0.02562 * 10 9 8 39 39 H 1.07998 * 119.96672 * 180.25929 * 11 10 9 40 40 H 1.08997 * 109.47151 * 30.02383 * 13 12 11 41 41 H 1.08997 * 109.47346 * 150.02750 * 13 12 11 42 42 H 0.96998 * 119.99949 * 180.02562 * 17 16 14 43 43 H 1.07994 * 119.96476 * 180.02562 * 22 12 11 44 44 H 1.08003 * 120.03201 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1584 3.4287 1.3184 6 6 1.9954 -0.7661 -1.1375 7 6 1.6314 -2.2427 -0.9702 8 7 2.1569 -3.0068 -2.1043 9 6 1.9484 -4.3861 -2.1738 10 6 1.2479 -5.0359 -1.1656 11 6 1.0394 -6.3991 -1.2397 12 6 1.5360 -7.1188 -2.3110 13 6 1.3119 -8.6071 -2.3855 14 6 2.4491 -9.3212 -1.7014 15 1 3.2538 -8.7540 -1.2574 16 6 2.4626 -10.6987 -1.6431 17 7 3.4548 -11.3219 -1.0456 18 14 1.0711 -11.6797 -2.4116 19 1 1.4027 -11.9841 -3.8267 20 1 0.8874 -12.9486 -1.6623 21 1 -0.1831 -10.8865 -2.3566 22 6 2.2384 -6.4759 -3.3139 23 6 2.4456 -5.1120 -3.2487 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3443 -0.1083 28 1 1.5612 1.9273 -0.8310 29 1 0.5471 2.0845 1.4264 30 1 2.0658 1.5016 2.1491 31 1 1.9313 3.9033 2.1794 32 1 3.1541 3.4335 1.1550 33 1 3.0797 -0.6612 -1.1755 34 1 1.5611 -0.3874 -2.0627 35 1 0.5472 -2.3476 -0.9321 36 1 2.0658 -2.6214 -0.0449 37 1 2.6497 -2.5547 -2.8070 38 1 0.8633 -4.4750 -0.3265 39 1 0.4913 -6.9043 -0.4583 40 1 0.3743 -8.8586 -1.8899 41 1 1.2650 -8.9157 -3.4298 42 1 3.4645 -12.2910 -1.0050 43 1 2.6246 -7.0408 -4.1494 44 1 2.9946 -4.6106 -4.0320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170502506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = 4.112289 kcal Electronic energy + Delta-G solvation = -20366.298132 eV Core-core repulsion = 17316.983959 eV Total energy + Delta-G solvation = -3049.314174 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37268 -39.16936 -36.96976 -35.37312 -34.76077 -32.67286 -31.66915 -30.38445 -28.74031 -27.93956 -26.10770 -24.25249 -23.79356 -22.32424 -21.73367 -21.42572 -18.92231 -18.23081 -17.43697 -16.93499 -16.75984 -16.48860 -16.05992 -15.84378 -15.80886 -15.13741 -14.82660 -14.66619 -14.50820 -14.28140 -14.14756 -13.89590 -13.75492 -13.37079 -13.20233 -13.06594 -12.85290 -12.47836 -12.39595 -12.16191 -11.90610 -11.80817 -11.70369 -11.60486 -11.46793 -10.75640 -10.55513 -9.68592 -9.67397 -9.40002 -8.27445 -8.07140 -6.30602 0.67075 0.87138 1.37520 1.39556 1.52104 2.31060 2.38036 3.06958 3.07362 3.13188 3.78330 3.89541 3.96381 4.09493 4.11867 4.20177 4.23859 4.42930 4.46692 4.50683 4.57759 4.61822 4.70476 4.75831 4.80051 4.89086 4.93195 4.98669 5.01788 5.11198 5.12564 5.16751 5.35031 5.52283 5.61909 5.69222 5.92957 5.95971 6.04824 6.16250 6.21613 6.32332 6.55027 6.55195 6.76074 6.95106 7.32486 8.90093 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041635 B = 0.002434 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.348269 B =11499.219866 C =11614.964374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.548 5.548 3 C 0.061 3.939 4 C 0.067 3.933 5 N -0.859 5.859 6 C 0.056 3.944 7 C 0.135 3.865 8 N -0.744 5.744 9 C 0.198 3.802 10 C -0.196 4.196 11 C -0.090 4.090 12 C -0.123 4.123 13 C 0.027 3.973 14 C -0.516 4.516 15 H 0.025 0.975 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.247 1.247 22 C -0.089 4.089 23 C -0.192 4.192 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.353 0.647 32 H 0.347 0.653 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.405 0.595 38 H 0.131 0.869 39 H 0.113 0.887 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.117 0.883 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 28.754 0.466 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.273 5.273 3 C -0.067 4.067 4 C -0.064 4.064 5 N -0.390 5.390 6 C -0.072 4.072 7 C 0.010 3.990 8 N -0.377 5.377 9 C 0.096 3.904 10 C -0.219 4.219 11 C -0.108 4.108 12 C -0.125 4.125 13 C -0.010 4.010 14 C -0.554 4.554 15 H 0.043 0.957 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.776 3.224 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.171 1.171 22 C -0.108 4.108 23 C -0.214 4.214 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.241 0.759 38 H 0.149 0.851 39 H 0.132 0.868 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.135 0.865 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.234 28.581 0.502 29.257 hybrid contribution 0.406 -0.828 -0.139 0.933 sum -5.827 27.753 0.363 28.360 Atomic orbital electron populations 1.22566 0.86635 1.02807 1.01198 1.61782 1.08817 1.13878 1.42799 1.22024 1.00256 0.87064 0.97393 1.21682 1.00324 0.88408 0.96034 1.58657 1.20350 1.16602 1.43440 1.22098 1.01025 0.92014 0.92103 1.21162 0.98342 0.90519 0.88982 1.44321 1.63213 1.03280 1.26875 1.17681 0.94481 0.84463 0.93769 1.20680 1.06385 0.94190 1.00597 1.20885 0.99106 0.93918 0.96923 1.19939 1.00644 0.95764 0.96158 1.18541 0.95770 0.90228 0.96479 1.21257 1.06889 0.91587 1.35652 0.95658 1.26036 0.98756 0.99008 0.95569 1.70075 1.34068 1.09270 1.45814 0.85616 0.80198 0.77788 0.78805 1.18979 1.20839 1.17057 1.20899 0.97135 0.94367 0.98356 1.20689 1.07036 0.93625 1.00074 0.91022 0.90300 0.95208 0.90543 0.94371 0.91032 0.94921 0.83352 0.84039 0.89696 0.93546 0.92439 0.92788 0.75905 0.85088 0.86846 0.95656 0.95655 0.92483 0.86514 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.13 127.69 1.17 1.37 16 2 N -0.55 -7.91 4.76 -922.48 -4.39 -12.30 16 3 C 0.06 0.76 5.22 86.30 0.45 1.21 16 4 C 0.07 0.76 6.72 86.30 0.58 1.34 16 5 N -0.86 -8.34 9.62 -186.73 -1.80 -10.13 16 6 C 0.06 0.81 5.07 86.30 0.44 1.24 16 7 C 0.13 2.52 4.84 86.38 0.42 2.94 16 8 N -0.74 -16.19 5.73 -339.41 -1.95 -18.14 16 9 C 0.20 5.97 6.65 38.21 0.25 6.22 16 10 C -0.20 -6.50 9.31 22.40 0.21 -6.29 16 11 C -0.09 -3.57 9.69 22.25 0.22 -3.36 16 12 C -0.12 -5.45 5.07 -19.84 -0.10 -5.55 16 13 C 0.03 1.35 4.17 29.10 0.12 1.47 16 14 C -0.52 -31.09 9.65 25.60 0.25 -30.84 16 15 H 0.03 1.70 7.98 -2.91 -0.02 1.68 16 16 C 0.00 0.16 5.47 84.65 0.46 0.62 16 17 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 18 Si 0.95 45.24 27.47 68.60 1.88 47.13 16 19 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 22 C -0.09 -3.47 9.69 22.25 0.22 -3.26 16 23 C -0.19 -6.13 9.90 22.40 0.22 -5.90 16 24 H 0.07 0.98 6.47 -2.39 -0.02 0.96 16 25 H 0.08 0.90 6.30 -2.39 -0.02 0.88 16 26 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.08 0.90 7.93 -2.39 -0.02 0.88 16 28 H 0.04 0.52 8.12 -2.38 -0.02 0.50 16 29 H 0.07 0.84 6.47 -2.39 -0.02 0.83 16 30 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.35 2.43 9.08 -89.69 -0.81 1.61 16 32 H 0.35 2.63 8.99 -89.70 -0.81 1.82 16 33 H 0.08 1.15 7.93 -2.39 -0.02 1.13 16 34 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 35 H 0.06 1.10 6.37 -2.39 -0.02 1.08 16 36 H 0.05 1.17 7.94 -2.38 -0.02 1.15 16 37 H 0.41 7.03 8.49 -92.71 -0.79 6.24 16 38 H 0.13 3.71 6.73 -2.91 -0.02 3.69 16 39 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 40 H 0.03 1.23 7.14 -2.39 -0.02 1.22 16 41 H 0.03 1.21 7.51 -2.39 -0.02 1.19 16 42 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 43 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 44 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -70.84 353.22 -2.51 -73.36 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -1.46 Total: 19.71 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 4.90 Total: -38.77 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -7.84 Total: -101.42 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -70.84 -2.51 -73.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170502506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.468 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds