Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 115.51962 * 2 1 4 4 C 1.55469 * 117.28812 * 213.83099 * 2 1 3 5 5 H 1.08996 * 120.33400 * 141.83941 * 4 2 1 6 6 C 1.54268 * 118.29865 * 345.81270 * 4 2 1 7 7 C 1.54888 * 104.19761 * 272.80351 * 6 4 2 8 8 H 1.08999 * 110.75703 * 156.25604 * 7 6 4 9 9 N 1.46901 * 110.91819 * 279.56016 * 7 6 4 10 10 C 1.46900 * 110.99939 * 46.02786 * 9 7 6 11 11 C 1.50706 * 109.46765 * 83.42869 * 10 9 7 12 12 H 1.07997 * 120.00273 * 356.35013 * 11 10 9 13 13 C 1.37875 * 119.99579 * 176.35651 * 11 10 9 14 14 N 1.31509 * 120.00356 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99723 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46884 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46862 * 119.99869 * 15 13 11 18 18 H 1.48497 * 109.47185 * 240.00013 * 15 13 11 19 19 C 1.46900 * 110.99653 * 282.07977 * 9 7 6 20 20 C 1.54269 * 110.03166 * 305.20803 * 19 9 7 21 21 C 1.54893 * 104.19433 * 217.10537 * 20 19 9 22 22 C 1.54889 * 102.74889 * 37.94231 * 21 20 19 23 23 C 1.53877 * 110.03186 * 188.04346 * 19 9 7 24 24 C 1.54899 * 102.74630 * 37.94235 * 7 6 4 25 25 C 1.52995 * 117.46215 * 145.48808 * 2 1 3 26 26 H 1.09004 * 119.30166 * 218.90488 * 25 2 1 27 27 H 1.08998 * 109.47135 * 282.21921 * 1 2 3 28 28 H 1.09006 * 109.46765 * 42.20994 * 1 2 3 29 29 H 1.08996 * 109.47261 * 162.21325 * 1 2 3 30 30 H 1.08990 * 109.47170 * 205.48160 * 3 2 1 31 31 H 1.09006 * 109.46791 * 325.48555 * 3 2 1 32 32 H 1.09001 * 109.46512 * 85.48141 * 3 2 1 33 33 H 1.09000 * 110.48851 * 154.12915 * 6 4 2 34 34 H 1.08997 * 110.60361 * 31.53679 * 6 4 2 35 35 H 1.09003 * 109.47308 * 203.42294 * 10 9 7 36 36 H 1.08994 * 109.47474 * 323.42767 * 10 9 7 37 37 H 0.97003 * 120.00387 * 179.97438 * 14 13 11 38 38 H 1.08997 * 110.01933 * 66.65126 * 19 9 7 39 39 H 1.08997 * 110.48707 * 335.78200 * 20 19 9 40 40 H 1.09002 * 110.48828 * 98.42852 * 20 19 9 41 41 H 1.08999 * 110.75641 * 279.62800 * 21 20 19 42 42 H 1.09006 * 110.75451 * 156.25653 * 21 20 19 43 43 H 1.09001 * 110.48902 * 203.37559 * 22 21 20 44 44 H 1.09007 * 110.59559 * 80.79054 * 22 21 20 45 45 H 1.09000 * 110.02905 * 238.57074 * 23 19 9 46 46 H 1.08997 * 110.03334 * 359.94831 * 23 19 9 47 47 H 1.08999 * 110.48630 * 203.37752 * 24 7 6 48 48 H 1.09003 * 110.59274 * 80.79576 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1892 1.3808 0.0000 4 6 2.2427 -1.1477 -0.7692 5 1 3.1525 -0.9488 -1.3356 6 6 1.4077 -2.3745 -1.1907 7 6 1.4691 -3.3160 0.0377 8 1 0.6169 -3.9955 0.0466 9 7 2.7315 -4.0670 0.0603 10 6 3.8746 -3.1831 -0.2039 11 6 4.2894 -2.5024 1.0752 12 1 3.7210 -2.6604 1.9798 13 6 5.3944 -1.6780 1.0903 14 7 6.0867 -1.4860 -0.0112 15 14 5.9081 -0.8338 2.6756 16 1 4.9712 -1.2120 3.7638 17 1 7.2844 -1.2574 3.0384 18 1 5.8775 0.6386 2.4847 19 6 2.6972 -5.1829 -0.8944 20 6 1.4720 -6.0783 -0.6169 21 6 1.9830 -7.5154 -0.8869 22 6 3.4279 -7.4746 -0.3305 23 6 3.9408 -6.0707 -0.7122 24 6 1.3964 -2.3287 1.2290 25 6 2.2355 -1.1186 0.7692 26 1 3.1379 -0.8893 1.3360 27 1 -0.3633 0.2175 1.0044 28 1 -0.3633 0.7612 -0.6905 29 1 -0.3633 -0.9785 -0.3139 30 1 3.1828 1.3090 -0.4421 31 1 1.5814 2.0735 -0.5823 32 1 2.2726 1.7435 1.0245 33 1 1.8503 -2.8559 -2.0627 34 1 0.3777 -2.0845 -1.3979 35 1 4.7075 -3.7715 -0.5889 36 1 3.5901 -2.4312 -0.9398 37 1 6.8640 -0.9056 -0.0006 38 1 2.6577 -4.8004 -1.9143 39 1 1.1516 -5.9759 0.4198 40 1 0.6562 -5.8297 -1.2957 41 1 1.9864 -7.7298 -1.9556 42 1 1.3817 -8.2470 -0.3470 43 1 4.0395 -8.2450 -0.8002 44 1 3.4255 -7.5985 0.7525 45 1 4.5043 -6.1196 -1.6440 46 1 4.5701 -5.6731 0.0839 47 1 1.8307 -2.7766 2.1228 48 1 0.3653 -2.0290 1.4162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170758972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = 27.914510 kcal Electronic energy + Delta-G solvation = -24043.568210 eV Core-core repulsion = 21098.826521 eV Total energy + Delta-G solvation = -2944.741689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74215 -39.09232 -36.09387 -34.60201 -32.25311 -30.36874 -29.37141 -29.11012 -28.44125 -28.07124 -26.46504 -24.04610 -21.79729 -20.98482 -20.31411 -19.76298 -19.26046 -18.28165 -17.30060 -16.74810 -16.45963 -16.28615 -15.57910 -14.96308 -14.75747 -14.51642 -14.17163 -14.10885 -13.72898 -13.44650 -13.27051 -13.07747 -12.82384 -12.75846 -12.71388 -12.41760 -12.40476 -12.16197 -12.15381 -11.85840 -11.79073 -11.72330 -11.66496 -11.53625 -11.48326 -11.28056 -11.01654 -10.91426 -10.49151 -9.95231 -9.87315 -8.65847 -8.02925 -5.93517 1.34875 1.39450 1.48401 2.44658 2.89375 3.33290 3.40522 3.74959 3.82069 3.87438 3.98998 4.10579 4.19703 4.36465 4.47275 4.54961 4.60023 4.64308 4.66890 4.75484 4.82172 4.83954 4.87622 4.89827 4.96232 4.96672 5.02044 5.08181 5.13759 5.15154 5.16941 5.19114 5.22846 5.30044 5.33442 5.35923 5.43051 5.45915 5.53919 5.56802 5.64592 5.71789 5.74161 5.87606 6.00277 6.32344 6.68213 6.88879 7.07395 7.57632 9.06756 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.008220 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.182997 B = 3405.497128 C = 4741.880778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.152 4.152 5 H 0.062 0.938 6 C -0.111 4.111 7 C 0.086 3.914 8 H 0.096 0.904 9 N -0.524 5.524 10 C 0.180 3.820 11 C -0.453 4.453 12 H 0.060 0.940 13 C 0.003 3.997 14 N -0.935 5.935 15 Si 0.928 3.072 16 H -0.263 1.263 17 H -0.290 1.290 18 H -0.285 1.285 19 C 0.078 3.922 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.072 4.072 25 C -0.128 4.128 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.089 0.911 35 H -0.014 1.014 36 H 0.022 0.978 37 H 0.253 0.747 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.247 -4.724 -1.362 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.164 4.164 4 C -0.170 4.170 5 H 0.080 0.920 6 C -0.150 4.150 7 C -0.023 4.023 8 H 0.114 0.886 9 N -0.247 5.247 10 C 0.054 3.946 11 C -0.492 4.492 12 H 0.079 0.921 13 C -0.193 4.193 14 N -0.578 5.578 15 Si 0.756 3.244 16 H -0.187 1.187 17 H -0.217 1.217 18 H -0.212 1.212 19 C -0.031 4.031 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.109 4.109 25 C -0.146 4.146 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.004 0.996 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.026 -4.855 -0.930 13.933 hybrid contribution 1.672 1.160 -0.302 2.057 sum -11.355 -3.695 -1.232 12.004 Atomic orbital electron populations 1.21333 0.90895 1.02351 1.01918 1.22378 0.95456 0.90424 1.04345 1.21197 0.99028 0.94778 1.01387 1.23357 0.98810 0.97708 0.97100 0.91982 1.22476 0.99676 0.94724 0.98134 1.22836 0.92290 0.93836 0.93330 0.88568 1.62380 1.02964 1.10500 1.48904 1.20047 0.87378 0.90864 0.96303 1.21322 1.08678 1.23100 0.96114 0.92145 1.25459 0.97249 0.98765 0.97806 1.70064 1.19489 1.40076 1.28218 0.85939 0.78061 0.78490 0.81954 1.18652 1.21659 1.21159 1.22271 0.96216 0.91960 0.92603 1.22427 0.95796 0.94514 1.01956 1.22435 0.95319 0.96124 1.01183 1.22267 0.97068 0.94984 1.00741 1.22150 0.97177 0.96258 0.99983 1.21871 0.98441 0.93181 0.97456 1.23665 0.99835 0.96460 0.94656 0.88122 0.91731 0.91793 0.91515 0.95373 0.90629 0.92515 0.94095 0.89312 0.99640 0.96109 0.93792 0.96769 0.90927 0.90970 0.90971 0.89761 0.90946 0.92001 0.93503 0.93709 0.92747 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 8.46 71.98 0.61 -2.20 16 2 C -0.13 -4.34 2.74 -51.33 -0.14 -4.48 16 3 C -0.11 -3.59 9.86 71.98 0.71 -2.88 16 4 C -0.15 -6.16 4.64 -9.22 -0.04 -6.21 16 5 H 0.06 3.12 7.02 -2.39 -0.02 3.10 16 6 C -0.11 -3.88 5.19 31.67 0.16 -3.71 16 7 C 0.09 3.00 3.01 46.21 0.14 3.14 16 8 H 0.10 2.84 6.31 -2.39 -0.02 2.82 16 9 N -0.52 -21.43 4.20 -838.68 -3.52 -24.95 16 10 C 0.18 9.08 3.84 85.56 0.33 9.41 16 11 C -0.45 -24.24 5.09 25.60 0.13 -24.11 16 12 H 0.06 3.25 5.69 -2.91 -0.02 3.24 16 13 C 0.00 0.16 4.97 84.66 0.42 0.59 16 14 N -0.94 -55.96 13.29 21.45 0.28 -55.68 16 15 Si 0.93 44.73 29.01 68.60 1.99 46.72 16 16 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 C 0.08 2.77 2.46 45.64 0.11 2.88 16 20 C -0.11 -2.90 4.94 31.67 0.16 -2.75 16 21 C -0.11 -2.53 6.91 31.89 0.22 -2.31 16 22 C -0.11 -3.04 6.83 31.67 0.22 -2.82 16 23 C -0.12 -4.21 5.59 31.32 0.18 -4.04 16 24 C -0.07 -2.57 5.29 31.67 0.17 -2.41 16 25 C -0.13 -5.23 4.25 -10.07 -0.04 -5.27 16 26 H 0.10 4.92 4.67 -2.39 -0.01 4.91 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.45 8.05 -2.38 -0.02 1.43 16 29 H 0.07 1.64 5.01 -2.39 -0.01 1.63 16 30 H 0.03 1.08 7.99 -2.39 -0.02 1.06 16 31 H 0.07 2.08 8.02 -2.38 -0.02 2.06 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.53 6.88 -2.39 -0.02 1.51 16 34 H 0.09 2.56 6.08 -2.39 -0.01 2.55 16 35 H -0.01 -0.84 6.38 -2.39 -0.02 -0.85 16 36 H 0.02 1.14 3.17 -2.39 -0.01 1.13 16 37 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.01 0.54 7.19 -2.39 -0.02 0.53 16 39 H 0.07 2.00 7.55 -2.39 -0.02 1.98 16 40 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 46 H 0.04 1.94 7.01 -2.39 -0.02 1.92 16 47 H 0.05 2.16 6.84 -2.39 -0.02 2.14 16 48 H 0.08 2.40 6.74 -2.39 -0.02 2.39 16 Total: -1.00 -61.37 335.92 3.01 -58.37 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.93 Total: 22.71 kcal Atomic # 6 Polarization: -50.48 SS G_CDS: 3.32 Total: -47.16 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -3.24 Total: -80.63 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.99 Total: 46.72 kcal Total: -61.37 3.01 -58.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170758972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.280 kcal (2) G-P(sol) polarization free energy of solvation -61.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds