Wall clock time and date at job start Mon Mar 30 2020 02:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47124 * 2 1 4 4 C 1.52996 * 109.47385 * 119.99730 * 2 1 3 5 5 C 1.52995 * 109.47461 * 184.99788 * 4 2 1 6 6 C 1.50703 * 109.47541 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99565 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00219 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00032 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00026 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47021 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46958 * 119.99693 * 10 8 6 13 13 H 1.48491 * 109.47320 * 239.99906 * 10 8 6 14 14 N 1.46894 * 109.47210 * 240.00498 * 2 1 3 15 15 C 1.46895 * 111.00247 * 84.99706 * 14 2 1 16 16 C 1.53006 * 109.47170 * 180.02562 * 15 14 2 17 17 C 1.53000 * 109.47041 * 59.99977 * 16 15 14 18 18 C 1.53002 * 109.47071 * 299.99579 * 16 15 14 19 19 C 1.50706 * 109.47086 * 180.02562 * 16 15 14 20 20 C 1.38386 * 120.00005 * 164.99897 * 19 16 15 21 21 N 1.32124 * 119.99712 * 180.02562 * 20 19 16 22 22 C 1.32158 * 120.00097 * 359.97438 * 21 20 19 23 23 C 1.38336 * 120.00075 * 0.26620 * 22 21 20 24 24 N 1.32127 * 120.00100 * 345.02075 * 19 16 15 25 25 H 1.08995 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46920 * 299.99726 * 1 2 3 27 27 H 1.09000 * 109.46814 * 59.99729 * 1 2 3 28 28 H 1.08996 * 109.47477 * 305.00799 * 4 2 1 29 29 H 1.09005 * 109.46793 * 65.00261 * 4 2 1 30 30 H 1.08996 * 109.47601 * 300.00935 * 5 4 2 31 31 H 1.09005 * 109.46732 * 60.00435 * 5 4 2 32 32 H 0.97000 * 120.00244 * 179.97438 * 9 8 6 33 33 H 1.00900 * 110.99862 * 208.95416 * 14 2 1 34 34 H 1.09000 * 109.47344 * 59.99841 * 15 14 2 35 35 H 1.09006 * 109.47343 * 299.99948 * 15 14 2 36 36 H 1.09001 * 109.46921 * 180.02562 * 17 16 15 37 37 H 1.08991 * 109.46868 * 299.99718 * 17 16 15 38 38 H 1.08999 * 109.46851 * 60.00313 * 17 16 15 39 39 H 1.08997 * 109.47346 * 300.00589 * 18 16 15 40 40 H 1.09001 * 109.46443 * 60.00069 * 18 16 15 41 41 H 1.08992 * 109.46989 * 180.02562 * 18 16 15 42 42 H 1.08005 * 120.00186 * 0.03930 * 20 19 16 43 43 H 1.08002 * 119.99718 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.00403 * 179.72028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3241 2.5438 7 1 3.3689 -1.8052 3.2125 8 6 5.4186 -1.3604 2.8155 9 7 6.2690 -0.7742 2.0014 10 14 6.0413 -2.2410 4.3407 11 1 4.8914 -2.8134 5.0860 12 1 6.9637 -3.3334 3.9396 13 1 6.7637 -1.2768 5.2087 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2227 -2.3468 16 6 2.5951 -0.5330 -3.5745 17 6 1.6452 -1.6887 -3.8953 18 6 3.9922 -1.0860 -3.2863 19 6 2.6600 0.4060 -4.7515 20 6 3.3750 0.0504 -5.8817 21 7 3.4323 0.8739 -6.9133 22 6 2.8065 2.0369 -6.8661 23 6 2.0959 2.3945 -5.7343 24 7 2.0347 1.5690 -4.7041 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0726 0.4259 31 1 3.8532 0.4371 1.3573 32 1 7.2196 -0.7993 2.1927 33 1 2.9173 -1.1204 -1.0287 34 1 2.7588 1.0464 -2.1182 35 1 1.0870 0.6165 -2.5525 36 1 2.0106 -2.2274 -4.7696 37 1 1.5987 -2.3677 -3.0439 38 1 0.6499 -1.2947 -4.1006 39 1 4.6689 -0.2626 -3.0577 40 1 3.9456 -1.7650 -2.4349 41 1 4.3576 -1.6239 -4.1610 42 1 3.8859 -0.9004 -5.9206 43 1 2.8538 2.7102 -7.7092 44 1 1.5883 3.3469 -5.6938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:18 Heat of formation + Delta-G solvation = 23.554056 kcal Electronic energy + Delta-G solvation = -21727.796218 eV Core-core repulsion = 18679.325103 eV Total energy + Delta-G solvation = -3048.471115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36393 -38.09601 -35.89746 -34.17786 -33.05053 -31.30192 -30.04200 -28.91363 -27.25426 -25.87299 -24.97963 -24.58428 -23.57807 -21.37270 -19.51367 -19.45190 -17.57362 -17.22164 -16.41380 -15.93901 -15.33033 -15.01336 -14.69084 -14.54740 -14.30550 -13.85045 -13.36349 -13.11989 -12.82672 -12.50957 -12.27392 -12.08335 -11.92062 -11.68233 -11.51433 -11.41695 -11.33972 -11.21520 -11.14549 -10.93660 -10.92085 -10.61301 -10.44292 -10.15607 -9.74031 -9.33960 -9.25707 -9.12513 -8.99597 -8.36040 -7.89797 -6.00898 -4.02722 0.63471 1.01236 3.30612 3.38367 3.42686 3.55573 3.85139 4.11382 4.26151 4.45840 4.53365 4.76473 4.91665 5.01533 5.09706 5.21924 5.28294 5.35119 5.41256 5.58218 5.71425 5.76766 5.88469 5.90467 5.98744 6.02375 6.11674 6.14619 6.24343 6.31944 6.36344 6.42855 6.44124 6.56578 6.60567 6.95378 7.10879 7.15294 7.56619 7.63426 7.65833 7.81776 7.95326 8.01106 8.42846 9.04311 9.61583 11.10260 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.003785 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.559966 B = 7395.408040 C = 8036.925651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.084 3.916 3 H 0.036 0.964 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.687 5.687 15 C 0.083 3.917 16 C -0.011 4.011 17 C -0.126 4.126 18 C -0.148 4.148 19 C 0.104 3.896 20 C 0.053 3.947 21 N -0.438 5.438 22 C 0.032 3.968 23 C 0.052 3.948 24 N -0.433 5.433 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.350 0.650 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 3.313 -16.488 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.026 4.026 3 H 0.054 0.946 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.322 5.322 15 C -0.047 4.047 16 C -0.013 4.013 17 C -0.184 4.184 18 C -0.206 4.206 19 C -0.037 4.037 20 C -0.107 4.107 21 N -0.152 5.152 22 C -0.127 4.127 23 C -0.107 4.107 24 N -0.147 5.147 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.173 0.827 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.186 0.814 43 H 0.184 0.816 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.176 3.112 -16.683 19.292 hybrid contribution 1.311 0.341 0.942 1.650 sum -7.865 3.452 -15.741 17.932 Atomic orbital electron populations 1.21775 0.95829 1.01567 1.00111 1.21562 0.94456 0.96086 0.90489 0.94573 1.21823 0.99575 0.99416 0.94387 1.19128 0.88870 0.96812 0.96859 1.21283 0.91930 1.34031 1.08328 0.92636 1.25019 0.97104 0.95632 0.96675 1.69969 1.02296 1.44195 1.37061 0.86560 0.78858 0.79474 0.83267 1.19731 1.21025 1.21098 1.60661 1.34574 1.32592 1.04403 1.21755 1.00750 0.92979 0.89182 1.19545 0.97398 0.93418 0.90942 1.21753 0.97797 0.96800 1.02033 1.22005 0.94166 1.01728 1.02672 1.22355 0.92568 0.92615 0.96161 1.23585 0.97479 1.00066 0.89616 1.68450 1.15920 1.03137 1.27686 1.23713 0.95144 0.94596 0.99219 1.23800 0.97166 0.99773 0.90007 1.68337 1.16312 1.02582 1.27513 0.92460 0.93208 0.93779 0.92832 0.92488 0.96694 0.97033 0.93130 0.82731 0.95399 0.90565 0.93330 0.89742 0.92927 0.92274 0.90162 0.92228 0.81424 0.81632 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.42 37.16 0.35 -1.66 16 2 C 0.08 1.46 2.65 -67.72 -0.18 1.28 16 3 H 0.04 0.68 7.80 -51.92 -0.40 0.27 16 4 C -0.11 -2.34 4.74 -26.74 -0.13 -2.47 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 N -0.69 -11.19 5.52 -106.72 -0.59 -11.78 16 15 C 0.08 1.24 3.79 -3.82 -0.01 1.22 16 16 C -0.01 -0.14 0.70 -155.65 -0.11 -0.25 16 17 C -0.13 -1.45 8.25 37.16 0.31 -1.14 16 18 C -0.15 -1.88 7.76 37.16 0.29 -1.59 16 19 C 0.10 1.30 5.55 -82.41 -0.46 0.85 16 20 C 0.05 0.61 10.25 -17.37 -0.18 0.43 16 21 N -0.44 -5.12 10.50 -13.06 -0.14 -5.26 16 22 C 0.03 0.31 11.22 -17.38 -0.20 0.11 16 23 C 0.05 0.52 11.22 -17.38 -0.20 0.32 16 24 N -0.43 -5.53 9.21 -9.29 -0.09 -5.62 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.01 0.39 6.43 -51.93 -0.33 0.05 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.35 6.26 4.51 -39.29 -0.18 6.08 16 34 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 35 H 0.08 1.15 7.16 -51.93 -0.37 0.78 16 36 H 0.05 0.48 8.10 -51.93 -0.42 0.05 16 37 H 0.08 1.04 7.60 -51.93 -0.39 0.64 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.11 6.57 -51.93 -0.34 0.77 16 41 H 0.06 0.61 6.72 -51.93 -0.35 0.26 16 42 H 0.17 1.59 6.74 -52.48 -0.35 1.24 16 43 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -30.96 350.61 -8.17 -39.13 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.30 Total: 3.37 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.05 Total: -15.83 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.08 Total: -48.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.96 -8.17 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.680 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds