Wall clock time and date at job start Mon Mar 30 2020 02:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.47124 * 2 1 4 4 C 1.52996 * 109.47385 * 119.99730 * 2 1 3 5 5 C 1.52995 * 109.47461 * 184.99788 * 4 2 1 6 6 C 1.50703 * 109.47541 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99565 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00219 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00032 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00026 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47021 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46958 * 119.99693 * 10 8 6 13 13 H 1.48491 * 109.47320 * 239.99906 * 10 8 6 14 14 N 1.46894 * 109.47210 * 240.00498 * 2 1 3 15 15 C 1.46895 * 111.00247 * 84.99706 * 14 2 1 16 16 C 1.53006 * 109.47170 * 180.02562 * 15 14 2 17 17 C 1.53000 * 109.47041 * 59.99977 * 16 15 14 18 18 C 1.53002 * 109.47071 * 299.99579 * 16 15 14 19 19 C 1.50706 * 109.47086 * 180.02562 * 16 15 14 20 20 C 1.38386 * 120.00005 * 164.99897 * 19 16 15 21 21 N 1.32124 * 119.99712 * 180.02562 * 20 19 16 22 22 C 1.32158 * 120.00097 * 359.97438 * 21 20 19 23 23 C 1.38336 * 120.00075 * 0.26620 * 22 21 20 24 24 N 1.32127 * 120.00100 * 345.02075 * 19 16 15 25 25 H 1.08995 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46920 * 299.99726 * 1 2 3 27 27 H 1.09000 * 109.46814 * 59.99729 * 1 2 3 28 28 H 1.08996 * 109.47477 * 305.00799 * 4 2 1 29 29 H 1.09005 * 109.46793 * 65.00261 * 4 2 1 30 30 H 1.08996 * 109.47601 * 300.00935 * 5 4 2 31 31 H 1.09005 * 109.46732 * 60.00435 * 5 4 2 32 32 H 0.97000 * 120.00244 * 179.97438 * 9 8 6 33 33 H 1.00900 * 110.99862 * 208.95416 * 14 2 1 34 34 H 1.09000 * 109.47344 * 59.99841 * 15 14 2 35 35 H 1.09006 * 109.47343 * 299.99948 * 15 14 2 36 36 H 1.09001 * 109.46921 * 180.02562 * 17 16 15 37 37 H 1.08991 * 109.46868 * 299.99718 * 17 16 15 38 38 H 1.08999 * 109.46851 * 60.00313 * 17 16 15 39 39 H 1.08997 * 109.47346 * 300.00589 * 18 16 15 40 40 H 1.09001 * 109.46443 * 60.00069 * 18 16 15 41 41 H 1.08992 * 109.46989 * 180.02562 * 18 16 15 42 42 H 1.08005 * 120.00186 * 0.03930 * 20 19 16 43 43 H 1.08002 * 119.99718 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.00403 * 179.72028 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3241 2.5438 7 1 3.3689 -1.8052 3.2125 8 6 5.4186 -1.3604 2.8155 9 7 6.2690 -0.7742 2.0014 10 14 6.0413 -2.2410 4.3407 11 1 4.8914 -2.8134 5.0860 12 1 6.9637 -3.3334 3.9396 13 1 6.7637 -1.2768 5.2087 14 7 2.0197 -0.6924 -1.1994 15 6 2.0824 0.2227 -2.3468 16 6 2.5951 -0.5330 -3.5745 17 6 1.6452 -1.6887 -3.8953 18 6 3.9922 -1.0860 -3.2863 19 6 2.6600 0.4060 -4.7515 20 6 3.3750 0.0504 -5.8817 21 7 3.4323 0.8739 -6.9133 22 6 2.8065 2.0369 -6.8661 23 6 2.0959 2.3945 -5.7343 24 7 2.0347 1.5690 -4.7041 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0726 0.4259 31 1 3.8532 0.4371 1.3573 32 1 7.2196 -0.7993 2.1927 33 1 2.9173 -1.1204 -1.0287 34 1 2.7588 1.0464 -2.1182 35 1 1.0870 0.6165 -2.5525 36 1 2.0106 -2.2274 -4.7696 37 1 1.5987 -2.3677 -3.0439 38 1 0.6499 -1.2947 -4.1006 39 1 4.6689 -0.2626 -3.0577 40 1 3.9456 -1.7650 -2.4349 41 1 4.3576 -1.6239 -4.1610 42 1 3.8859 -0.9004 -5.9206 43 1 2.8538 2.7102 -7.7092 44 1 1.5883 3.3469 -5.6938 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172480555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:18 Heat of formation + Delta-G solvation = 4.210210 kcal Electronic energy + Delta-G solvation = -21728.635030 eV Core-core repulsion = 18679.325103 eV Total energy + Delta-G solvation = -3049.309928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21303 -39.32216 -37.22281 -35.15080 -34.95432 -32.65694 -31.37044 -30.30101 -28.26505 -27.25436 -26.53336 -25.45855 -24.65763 -23.18167 -21.07131 -20.48854 -18.59832 -18.37797 -18.00825 -17.01734 -16.59617 -16.47904 -16.15453 -15.81516 -15.36458 -14.93226 -14.61438 -14.36102 -14.33181 -13.99121 -13.81328 -13.21613 -13.19131 -13.09470 -12.86282 -12.70340 -12.58461 -12.52434 -12.35466 -12.29256 -12.26475 -11.98614 -11.82952 -11.64025 -11.53647 -11.26587 -10.92662 -10.54691 -10.15643 -9.96949 -9.29315 -8.19550 -6.29932 -0.16716 0.17341 1.39670 1.40366 1.53412 2.41256 2.73663 3.00487 3.13373 3.19573 3.38584 3.61769 3.79747 3.91774 3.98635 4.12506 4.20582 4.35712 4.37713 4.46949 4.50698 4.57698 4.72102 4.76194 4.80227 4.83305 4.92260 5.01154 5.03729 5.07327 5.10686 5.14543 5.23868 5.32863 5.40920 5.46127 5.49993 5.55537 5.71418 5.85067 6.23134 6.26908 6.33683 6.49801 6.84040 6.86604 7.39252 8.91897 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.003785 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.559966 B = 7395.408040 C = 8036.925651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.086 3.914 3 H 0.019 0.981 4 C -0.100 4.100 5 C 0.028 3.972 6 C -0.540 4.540 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.280 1.280 14 N -0.679 5.679 15 C 0.092 3.908 16 C -0.004 4.004 17 C -0.119 4.119 18 C -0.145 4.145 19 C 0.086 3.914 20 C 0.047 3.953 21 N -0.457 5.457 22 C 0.040 3.960 23 C 0.050 3.950 24 N -0.462 5.462 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.001 0.999 31 H -0.021 1.021 32 H 0.262 0.738 33 H 0.339 0.661 34 H 0.001 0.999 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.183 0.817 43 H 0.203 0.797 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 3.011 -17.247 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.023 4.023 3 H 0.037 0.963 4 C -0.138 4.138 5 C -0.010 4.010 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.206 1.206 14 N -0.313 5.313 15 C -0.037 4.037 16 C -0.006 4.006 17 C -0.177 4.177 18 C -0.202 4.202 19 C -0.054 4.054 20 C -0.112 4.112 21 N -0.172 5.172 22 C -0.120 4.120 23 C -0.110 4.110 24 N -0.177 5.177 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.019 0.981 31 H -0.003 1.003 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.020 0.980 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.200 0.800 43 H 0.220 0.780 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.085 2.793 -17.438 20.337 hybrid contribution 1.595 0.547 1.110 2.019 sum -8.490 3.340 -16.328 18.704 Atomic orbital electron populations 1.21677 0.93129 1.02243 1.01219 1.21515 0.96473 0.94670 0.89672 0.96272 1.21637 0.96088 0.99990 0.96114 1.19001 0.92178 0.94215 0.95570 1.21706 0.92508 1.34334 1.09249 0.92344 1.25930 0.97366 0.96339 0.99962 1.70098 1.02691 1.45386 1.38986 0.85443 0.78427 0.78278 0.79172 1.18652 1.20286 1.20630 1.60757 1.33688 1.32526 1.04370 1.21680 1.00131 0.92252 0.89666 1.19429 0.97261 0.93791 0.90148 1.21682 0.97385 0.96138 1.02447 1.21966 0.94154 1.00881 1.03229 1.22240 0.93867 0.92921 0.96349 1.23753 0.97363 1.00786 0.89297 1.68510 1.16754 1.04109 1.27805 1.24334 0.93456 0.94164 1.00038 1.24369 0.96951 1.00372 0.89342 1.68285 1.17177 1.03166 1.29097 0.91934 0.92117 0.92686 0.92619 0.92223 0.98083 1.00261 0.92902 0.83970 0.98048 0.90512 0.91326 0.90688 0.93153 0.94300 0.91692 0.89523 0.80010 0.78014 0.78401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.57 9.42 71.98 0.68 -2.89 16 2 C 0.09 3.06 2.65 44.92 0.12 3.18 16 3 H 0.02 0.74 7.80 -2.38 -0.02 0.73 16 4 C -0.10 -4.17 4.74 30.59 0.15 -4.03 16 5 C 0.03 1.45 4.80 29.85 0.14 1.59 16 6 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 7 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 8 C 0.00 0.10 5.46 84.65 0.46 0.56 16 9 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 10 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 14 N -0.68 -22.73 5.52 -491.57 -2.71 -25.44 16 15 C 0.09 2.83 3.79 86.31 0.33 3.16 16 16 C 0.00 -0.11 0.70 -52.92 -0.04 -0.15 16 17 C -0.12 -2.64 8.25 71.98 0.59 -2.04 16 18 C -0.14 -3.77 7.76 71.98 0.56 -3.21 16 19 C 0.09 2.13 5.55 42.55 0.24 2.36 16 20 C 0.05 1.03 10.25 84.68 0.87 1.90 16 21 N -0.46 -9.93 10.50 -195.22 -2.05 -11.98 16 22 C 0.04 0.66 11.22 84.67 0.95 1.61 16 23 C 0.05 0.89 11.22 84.67 0.95 1.84 16 24 N -0.46 -11.52 9.21 -183.29 -1.69 -13.21 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.46 7.45 -2.39 -0.02 1.44 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.00 0.05 6.43 -2.39 -0.02 0.04 16 31 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.34 12.73 4.51 -89.69 -0.40 12.32 16 34 H 0.00 0.04 8.05 -2.39 -0.02 0.03 16 35 H 0.08 2.34 7.16 -2.38 -0.02 2.32 16 36 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.07 1.80 7.60 -2.39 -0.02 1.78 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.88 6.57 -2.39 -0.02 1.86 16 41 H 0.09 1.73 6.72 -2.39 -0.02 1.71 16 42 H 0.18 3.21 6.74 -2.91 -0.02 3.19 16 43 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -67.62 350.61 2.65 -64.97 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.56 Total: 22.13 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 6.23 Total: -26.67 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -6.17 Total: -106.85 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.62 2.65 -64.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.181 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds