Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46770 * 2 1 4 4 C 1.52991 * 109.47078 * 240.00133 * 2 1 3 5 5 C 1.53006 * 109.47269 * 174.99981 * 4 2 1 6 6 C 1.50695 * 109.47469 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00015 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99929 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00121 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47053 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47182 * 119.99910 * 10 8 6 13 13 H 1.48503 * 109.47462 * 240.00035 * 10 8 6 14 14 N 1.46897 * 109.47016 * 119.99946 * 2 1 3 15 15 C 1.46901 * 111.00124 * 274.99981 * 14 2 1 16 16 C 1.50697 * 109.47327 * 180.02562 * 15 14 2 17 17 C 1.34669 * 125.98868 * 94.71920 * 16 15 14 18 18 N 1.36890 * 106.81617 * 180.26398 * 17 16 15 19 19 C 1.46501 * 126.39537 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47323 * 270.03108 * 19 18 17 21 21 C 1.52998 * 117.49842 * 243.62254 * 20 19 18 22 22 C 1.52995 * 117.49688 * 175.00103 * 20 19 18 23 23 C 1.35040 * 107.20282 * 359.97438 * 18 17 16 24 24 N 1.30493 * 108.70593 * 0.02562 * 23 18 17 25 25 H 1.09000 * 109.46770 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46879 * 299.99831 * 1 2 3 27 27 H 1.09001 * 109.46610 * 60.00274 * 1 2 3 28 28 H 1.09001 * 109.47469 * 294.99650 * 4 2 1 29 29 H 1.09001 * 109.47769 * 54.99948 * 4 2 1 30 30 H 1.09001 * 109.46605 * 300.00198 * 5 4 2 31 31 H 1.09001 * 109.46751 * 59.99344 * 5 4 2 32 32 H 0.96995 * 119.99725 * 179.97438 * 9 8 6 33 33 H 1.00892 * 111.00149 * 151.04885 * 14 2 1 34 34 H 1.09005 * 109.46932 * 60.00104 * 15 14 2 35 35 H 1.08996 * 109.47358 * 300.00482 * 15 14 2 36 36 H 1.07996 * 126.59123 * 0.22382 * 17 16 15 37 37 H 1.09002 * 109.46642 * 30.03207 * 19 18 17 38 38 H 1.08998 * 109.46585 * 150.02828 * 19 18 17 39 39 H 1.09001 * 115.54811 * 29.33134 * 20 19 18 40 40 H 1.09000 * 117.50070 * 0.02562 * 21 20 19 41 41 H 1.08997 * 117.49879 * 145.01888 * 21 20 19 42 42 H 1.09006 * 117.49675 * 214.97522 * 22 20 19 43 43 H 1.08998 * 117.50308 * 359.97438 * 22 20 19 44 44 H 1.08006 * 125.64812 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3230 -2.5444 7 1 3.3688 -1.8035 -3.2136 8 6 5.4186 -1.3600 -2.8157 9 7 6.2691 -0.7753 -2.0006 10 14 6.0413 -2.2404 -4.3409 11 1 4.8913 -2.8120 -5.0868 12 1 6.7646 -1.2763 -5.2084 13 1 6.9631 -3.3335 -3.9399 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5885 -0.5215 3.5557 17 6 3.8675 -0.5747 3.9741 18 7 3.8845 -1.3572 5.0972 19 6 5.0609 -1.6995 5.9004 20 6 5.6891 -2.9866 5.3621 21 6 5.7044 -4.2055 6.2867 22 6 7.0025 -3.4501 5.9953 23 6 2.6144 -1.7547 5.3263 24 7 1.8449 -1.2513 4.4004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.7518 -1.7715 -1.2056 29 1 1.6055 -0.2617 -2.1370 30 1 3.8532 0.4371 -1.3573 31 1 3.9995 -1.0727 -0.4259 32 1 7.2198 -0.8016 -2.1913 33 1 2.9173 -1.1204 1.0288 34 1 1.0871 0.6163 2.5525 35 1 2.7588 1.0462 2.1183 36 1 4.7165 -0.0931 3.5121 37 1 5.7878 -0.8892 5.8437 38 1 4.7618 -1.8475 6.9380 39 1 5.5540 -3.1652 4.2954 40 1 5.2665 -4.0907 7.2782 41 1 5.5791 -5.1865 5.8283 42 1 7.7314 -3.9341 5.3451 43 1 7.4193 -2.8379 6.7950 44 1 2.2895 -2.3855 6.1405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = 69.833210 kcal Electronic energy + Delta-G solvation = -21038.628197 eV Core-core repulsion = 17992.163896 eV Total energy + Delta-G solvation = -3046.464301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94615 -37.91795 -37.02057 -33.87759 -33.05210 -31.60930 -29.48712 -28.67147 -27.36944 -25.27013 -24.13966 -22.72814 -21.66330 -21.30637 -20.68385 -19.97799 -19.36940 -17.37815 -16.32756 -15.75720 -15.36004 -15.08747 -14.76913 -14.56852 -14.45174 -13.96405 -13.63285 -13.28715 -13.12834 -12.48898 -12.45993 -12.28187 -12.02001 -11.88024 -11.83405 -11.44845 -11.29369 -11.00635 -10.89815 -10.80136 -10.46656 -10.44287 -10.18832 -9.74929 -9.64907 -9.44411 -9.21806 -8.97715 -8.33876 -8.26501 -7.76534 -5.99227 -4.00333 2.14247 2.75954 3.27982 3.31585 3.39044 3.41110 3.44086 4.27478 4.41852 4.47509 4.57289 4.69180 4.72191 4.93200 4.97900 4.99878 5.17422 5.28573 5.36955 5.45180 5.54367 5.57941 5.68327 5.75432 5.84607 5.88122 5.99503 6.06107 6.15200 6.31663 6.37368 6.49897 6.63433 6.65911 6.87745 7.01858 7.16117 7.29506 7.66185 7.67364 7.87472 7.99697 8.08587 8.29280 8.45979 9.06767 9.63584 11.12161 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.004362 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.651715 B = 6417.767019 C = 8376.845654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 H 0.037 0.963 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.890 3.110 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 N -0.679 5.679 15 C 0.144 3.856 16 C 0.014 3.986 17 C -0.048 4.048 18 N -0.458 5.458 19 C 0.140 3.860 20 C -0.177 4.177 21 C -0.175 4.175 22 C -0.170 4.170 23 C 0.176 3.824 24 N -0.476 5.476 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.350 0.650 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.173 0.827 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.633 -1.258 18.908 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.026 4.026 3 H 0.055 0.945 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.314 5.314 15 C 0.013 3.987 16 C -0.115 4.115 17 C -0.181 4.181 18 N -0.142 5.142 19 C 0.017 3.983 20 C -0.196 4.196 21 C -0.212 4.212 22 C -0.207 4.207 23 C -0.106 4.106 24 N -0.194 5.194 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.172 0.828 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.190 0.810 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.807 -1.612 19.107 19.379 hybrid contribution 2.286 0.042 -0.946 2.474 sum -0.521 -1.570 18.161 18.236 Atomic orbital electron populations 1.21783 0.95770 1.01734 1.00055 1.21596 0.94585 0.95971 0.90489 0.94534 1.21818 0.99527 0.99488 0.94355 1.19133 0.88936 0.96800 0.96828 1.21306 0.91939 1.33922 1.08236 0.92623 1.25013 0.97089 0.95660 0.96682 1.69971 1.02218 1.44429 1.37074 0.86563 0.78860 0.79464 0.83295 1.19696 1.21070 1.21093 1.60552 1.34646 1.32392 1.03768 1.20091 1.00037 0.92006 0.86520 1.20563 0.89746 1.02610 0.98568 1.22573 1.00314 1.03089 0.92106 1.45417 1.08485 1.38047 1.22232 1.21378 0.86089 0.96659 0.94194 1.22709 1.01737 0.95029 1.00134 1.23075 1.01341 0.96505 1.00290 1.22968 0.90902 1.03596 1.03264 1.24896 0.79668 1.04039 1.01985 1.70165 1.33194 1.11996 1.04041 0.92417 0.93682 0.93192 0.92529 0.92776 0.96946 0.96671 0.93204 0.82847 0.90476 0.94423 0.81022 0.88751 0.88991 0.86693 0.88575 0.88455 0.88212 0.88480 0.78437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.42 37.16 0.35 -1.83 16 2 C 0.08 1.53 2.65 -67.71 -0.18 1.35 16 3 H 0.04 0.68 7.80 -51.93 -0.40 0.28 16 4 C -0.11 -2.44 4.74 -26.73 -0.13 -2.57 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 7 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 N -0.68 -12.61 6.30 -107.99 -0.68 -13.29 16 15 C 0.14 2.37 6.02 -4.98 -0.03 2.34 16 16 C 0.01 0.23 6.60 -82.85 -0.55 -0.32 16 17 C -0.05 -0.67 11.49 -16.56 -0.19 -0.86 16 18 N -0.46 -5.36 2.75 -118.58 -0.33 -5.68 16 19 C 0.14 1.12 6.43 -4.04 -0.03 1.09 16 20 C -0.18 -1.55 6.01 -90.63 -0.54 -2.10 16 21 C -0.18 -1.26 10.18 -26.73 -0.27 -1.53 16 22 C -0.17 -1.21 10.25 -26.73 -0.27 -1.49 16 23 C 0.18 2.24 12.56 -90.38 -1.14 1.10 16 24 N -0.48 -7.80 11.25 -10.87 -0.12 -7.92 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.67 7.45 -51.93 -0.39 0.29 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.41 6.43 -51.93 -0.33 0.07 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.35 7.15 6.46 -39.30 -0.25 6.89 16 34 H 0.08 1.25 7.44 -51.93 -0.39 0.87 16 35 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 36 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.53 7.88 -51.93 -0.41 0.12 16 39 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.10 0.55 8.03 -51.93 -0.42 0.13 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.20 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -32.53 363.29 -11.08 -43.61 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.62 Total: 5.08 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.52 Total: -17.97 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.39 Total: -53.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.53 -11.08 -43.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.445 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds