Wall clock time and date at job start Mon Mar 30 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46770 * 2 1 4 4 C 1.52991 * 109.47078 * 240.00133 * 2 1 3 5 5 C 1.53006 * 109.47269 * 174.99981 * 4 2 1 6 6 C 1.50695 * 109.47469 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00015 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99929 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00121 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47053 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47182 * 119.99910 * 10 8 6 13 13 H 1.48503 * 109.47462 * 240.00035 * 10 8 6 14 14 N 1.46897 * 109.47016 * 119.99946 * 2 1 3 15 15 C 1.46901 * 111.00124 * 274.99981 * 14 2 1 16 16 C 1.50697 * 109.47327 * 180.02562 * 15 14 2 17 17 C 1.34669 * 125.98868 * 94.71920 * 16 15 14 18 18 N 1.36890 * 106.81617 * 180.26398 * 17 16 15 19 19 C 1.46501 * 126.39537 * 179.97438 * 18 17 16 20 20 C 1.52996 * 109.47323 * 270.03108 * 19 18 17 21 21 C 1.52998 * 117.49842 * 243.62254 * 20 19 18 22 22 C 1.52995 * 117.49688 * 175.00103 * 20 19 18 23 23 C 1.35040 * 107.20282 * 359.97438 * 18 17 16 24 24 N 1.30493 * 108.70593 * 0.02562 * 23 18 17 25 25 H 1.09000 * 109.46770 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46879 * 299.99831 * 1 2 3 27 27 H 1.09001 * 109.46610 * 60.00274 * 1 2 3 28 28 H 1.09001 * 109.47469 * 294.99650 * 4 2 1 29 29 H 1.09001 * 109.47769 * 54.99948 * 4 2 1 30 30 H 1.09001 * 109.46605 * 300.00198 * 5 4 2 31 31 H 1.09001 * 109.46751 * 59.99344 * 5 4 2 32 32 H 0.96995 * 119.99725 * 179.97438 * 9 8 6 33 33 H 1.00892 * 111.00149 * 151.04885 * 14 2 1 34 34 H 1.09005 * 109.46932 * 60.00104 * 15 14 2 35 35 H 1.08996 * 109.47358 * 300.00482 * 15 14 2 36 36 H 1.07996 * 126.59123 * 0.22382 * 17 16 15 37 37 H 1.09002 * 109.46642 * 30.03207 * 19 18 17 38 38 H 1.08998 * 109.46585 * 150.02828 * 19 18 17 39 39 H 1.09001 * 115.54811 * 29.33134 * 20 19 18 40 40 H 1.09000 * 117.50070 * 0.02562 * 21 20 19 41 41 H 1.08997 * 117.49879 * 145.01888 * 21 20 19 42 42 H 1.09006 * 117.49675 * 214.97522 * 22 20 19 43 43 H 1.08998 * 117.50308 * 359.97438 * 22 20 19 44 44 H 1.08006 * 125.64812 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3230 -2.5444 7 1 3.3688 -1.8035 -3.2136 8 6 5.4186 -1.3600 -2.8157 9 7 6.2691 -0.7753 -2.0006 10 14 6.0413 -2.2404 -4.3409 11 1 4.8913 -2.8120 -5.0868 12 1 6.7646 -1.2763 -5.2084 13 1 6.9631 -3.3335 -3.9399 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5885 -0.5215 3.5557 17 6 3.8675 -0.5747 3.9741 18 7 3.8845 -1.3572 5.0972 19 6 5.0609 -1.6995 5.9004 20 6 5.6891 -2.9866 5.3621 21 6 5.7044 -4.2055 6.2867 22 6 7.0025 -3.4501 5.9953 23 6 2.6144 -1.7547 5.3263 24 7 1.8449 -1.2513 4.4004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.7518 -1.7715 -1.2056 29 1 1.6055 -0.2617 -2.1370 30 1 3.8532 0.4371 -1.3573 31 1 3.9995 -1.0727 -0.4259 32 1 7.2198 -0.8016 -2.1913 33 1 2.9173 -1.1204 1.0288 34 1 1.0871 0.6163 2.5525 35 1 2.7588 1.0462 2.1183 36 1 4.7165 -0.0931 3.5121 37 1 5.7878 -0.8892 5.8437 38 1 4.7618 -1.8475 6.9380 39 1 5.5540 -3.1652 4.2954 40 1 5.2665 -4.0907 7.2782 41 1 5.5791 -5.1865 5.8283 42 1 7.7314 -3.9341 5.3451 43 1 7.4193 -2.8379 6.7950 44 1 2.2895 -2.3855 6.1405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:04 Heat of formation + Delta-G solvation = 52.052138 kcal Electronic energy + Delta-G solvation = -21039.399242 eV Core-core repulsion = 17992.163896 eV Total energy + Delta-G solvation = -3047.235346 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.97113 -38.74238 -38.38938 -35.44301 -34.56251 -33.13730 -31.16868 -29.91058 -28.26065 -27.08975 -25.55408 -23.29481 -23.18629 -22.52859 -21.48624 -21.19264 -20.91159 -18.58177 -18.20169 -16.79586 -16.56001 -16.42802 -16.25457 -15.96937 -15.51200 -14.90210 -14.73787 -14.64500 -14.40272 -14.13606 -13.86478 -13.72318 -13.28493 -13.07883 -13.00498 -12.86125 -12.69855 -12.43240 -12.39950 -12.32573 -11.86230 -11.59887 -11.47976 -11.30113 -11.12432 -10.94740 -10.75102 -10.55089 -10.43980 -9.42260 -9.19201 -8.20631 -6.30605 1.10460 1.38322 1.38774 1.52201 1.90583 2.14607 2.40330 2.80856 3.12444 3.49182 3.63688 3.68334 3.82946 3.90895 4.06628 4.09952 4.13543 4.26209 4.35283 4.40427 4.49607 4.53701 4.56739 4.68170 4.76084 4.79718 4.94895 4.98176 5.02091 5.06709 5.10241 5.15423 5.21498 5.24259 5.35606 5.46189 5.54273 5.70595 5.76592 5.84488 6.25505 6.29417 6.35867 6.48320 6.85515 7.21617 7.38163 8.91066 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.004362 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.651715 B = 6417.767019 C = 8376.845654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.087 3.913 3 H 0.033 0.967 4 C -0.101 4.101 5 C 0.029 3.971 6 C -0.542 4.542 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.277 1.277 13 H -0.278 1.278 14 N -0.683 5.683 15 C 0.148 3.852 16 C -0.014 4.014 17 C -0.053 4.053 18 N -0.452 5.452 19 C 0.139 3.861 20 C -0.194 4.194 21 C -0.167 4.167 22 C -0.162 4.162 23 C 0.186 3.814 24 N -0.519 5.519 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.060 0.940 30 H -0.013 1.013 31 H -0.003 1.003 32 H 0.263 0.737 33 H 0.335 0.665 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.176 0.824 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -1.910 20.051 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.023 4.023 3 H 0.051 0.949 4 C -0.138 4.138 5 C -0.009 4.009 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.202 1.202 13 H -0.204 1.204 14 N -0.317 5.317 15 C 0.018 3.982 16 C -0.142 4.142 17 C -0.188 4.188 18 N -0.134 5.134 19 C 0.018 3.982 20 C -0.214 4.214 21 C -0.204 4.204 22 C -0.200 4.200 23 C -0.097 4.097 24 N -0.238 5.238 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.006 0.994 31 H 0.015 0.985 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.193 0.807 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.797 -2.261 20.262 20.579 hybrid contribution 2.334 0.218 -1.241 2.653 sum -0.462 -2.043 19.022 19.137 Atomic orbital electron populations 1.21699 0.93372 1.01883 1.01481 1.21559 0.96344 0.95156 0.89198 0.94859 1.21635 0.96329 0.99591 0.96286 1.18989 0.91962 0.94602 0.95303 1.21720 0.92590 1.34473 1.09217 0.92521 1.25918 0.97287 0.96312 0.99995 1.70091 1.02668 1.45433 1.38919 0.85449 0.78393 0.78314 0.79206 1.18788 1.20243 1.20411 1.60645 1.33596 1.33079 1.04339 1.20044 1.00188 0.91762 0.86201 1.20557 0.90724 1.03942 0.99005 1.22661 0.99778 1.03406 0.92966 1.45588 1.09426 1.36824 1.21522 1.21678 0.85000 0.96455 0.95066 1.22555 1.03847 0.96454 0.98495 1.23176 1.01105 0.95361 1.00716 1.23056 0.90368 1.03324 1.03233 1.25600 0.79583 1.02881 1.01652 1.70094 1.34742 1.13487 1.05441 0.92857 0.92494 0.91536 0.93150 0.92175 0.99431 0.98526 0.92858 0.84555 0.90282 0.94364 0.80651 0.87768 0.85615 0.90463 0.86192 0.89270 0.89027 0.86305 0.74666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.42 71.99 0.68 -3.25 16 2 C 0.09 3.24 2.65 44.92 0.12 3.36 16 3 H 0.03 1.26 7.80 -2.39 -0.02 1.24 16 4 C -0.10 -4.38 4.74 30.59 0.15 -4.23 16 5 C 0.03 1.54 4.80 29.85 0.14 1.68 16 6 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 0.15 5.46 84.66 0.46 0.61 16 9 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 10 Si 0.96 44.94 29.54 68.60 2.03 46.96 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 N -0.68 -26.15 6.30 -495.58 -3.12 -29.27 16 15 C 0.15 5.02 6.02 85.56 0.52 5.53 16 16 C -0.01 -0.45 6.60 41.39 0.27 -0.18 16 17 C -0.05 -1.53 11.49 83.08 0.95 -0.58 16 18 N -0.45 -10.08 2.75 -529.07 -1.46 -11.54 16 19 C 0.14 1.94 6.43 86.38 0.56 2.49 16 20 C -0.19 -3.22 6.01 -10.80 -0.06 -3.29 16 21 C -0.17 -2.07 10.18 30.59 0.31 -1.75 16 22 C -0.16 -2.05 10.25 30.59 0.31 -1.73 16 23 C 0.19 4.44 12.56 180.27 2.26 6.71 16 24 N -0.52 -16.91 11.25 -188.32 -2.12 -19.03 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.63 7.45 -2.39 -0.02 1.62 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 31 H 0.00 -0.20 6.43 -2.39 -0.02 -0.21 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.34 14.41 6.46 -89.70 -0.58 13.83 16 34 H 0.08 2.60 7.44 -2.38 -0.02 2.58 16 35 H 0.04 1.27 8.05 -2.39 -0.02 1.25 16 36 H 0.18 4.72 8.06 -2.91 -0.02 4.69 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 0.94 7.88 -2.39 -0.02 0.92 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.12 0.93 8.03 -2.39 -0.02 0.91 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.24 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -71.45 363.29 2.90 -68.55 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.38 Total: 26.76 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 6.90 Total: -25.98 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -6.41 Total: -116.30 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.45 2.90 -68.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.604 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds