Wall clock time and date at job start Mon Mar 30 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47421 * 2 1 4 4 C 1.52999 * 109.47033 * 240.00113 * 2 1 3 5 5 C 1.53007 * 109.47173 * 174.99983 * 4 2 1 6 6 C 1.50703 * 109.47131 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00234 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99829 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00061 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99844 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47242 * 89.99857 * 10 8 6 12 12 H 1.48493 * 109.47149 * 209.99974 * 10 8 6 13 13 H 1.48502 * 109.47342 * 329.99902 * 10 8 6 14 14 N 1.46899 * 109.47368 * 120.00334 * 2 1 3 15 15 C 1.46898 * 111.00077 * 275.00111 * 14 2 1 16 16 C 1.50696 * 109.47438 * 179.97438 * 15 14 2 17 17 C 1.34669 * 126.59505 * 94.95309 * 16 15 14 18 18 N 1.34128 * 108.02336 * 180.02562 * 17 16 15 19 19 C 1.30498 * 109.25660 * 0.02562 * 18 17 16 20 20 N 1.35044 * 108.69841 * 0.02562 * 19 18 17 21 21 C 1.46503 * 126.39660 * 179.74090 * 20 19 18 22 22 C 1.53783 * 113.61841 * 37.51845 * 21 20 19 23 23 C 1.53775 * 87.08441 * 220.02200 * 22 21 20 24 24 C 1.53782 * 87.08398 * 25.42949 * 23 22 21 25 25 H 1.09000 * 109.46594 * 299.99906 * 1 2 3 26 26 H 1.09000 * 109.47076 * 59.99996 * 1 2 3 27 27 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47184 * 294.99743 * 4 2 1 29 29 H 1.09003 * 109.47411 * 55.00130 * 4 2 1 30 30 H 1.08995 * 109.47426 * 300.00026 * 5 4 2 31 31 H 1.09003 * 109.46915 * 60.00342 * 5 4 2 32 32 H 0.97000 * 119.99542 * 180.02562 * 9 8 6 33 33 H 1.00900 * 111.00224 * 38.95069 * 14 2 1 34 34 H 1.08997 * 109.47126 * 59.99517 * 15 14 2 35 35 H 1.09006 * 109.46938 * 299.99650 * 15 14 2 36 36 H 1.07998 * 125.98937 * 0.07309 * 17 16 15 37 37 H 1.08002 * 125.65412 * 179.97438 * 19 18 17 38 38 H 1.09000 * 112.85087 * 168.82387 * 21 20 19 39 39 H 1.09008 * 113.61299 * 334.57239 * 22 21 20 40 40 H 1.08997 * 113.61224 * 105.46694 * 22 21 20 41 41 H 1.09000 * 113.61553 * 270.88321 * 23 22 21 42 42 H 1.09003 * 113.61468 * 139.98066 * 23 22 21 43 43 H 1.08995 * 113.62118 * 220.02373 * 24 23 22 44 44 H 1.09003 * 113.61432 * 89.11342 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3242 -2.5439 7 1 3.3687 -1.8046 -3.2131 8 6 5.4185 -1.3613 -2.8151 9 7 6.2691 -0.7768 -2.0000 10 14 6.0412 -2.2420 -4.3403 11 1 6.0918 -1.2876 -5.4770 12 1 7.4021 -2.7769 -4.0821 13 1 5.1245 -3.3615 -4.6745 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2224 2.3469 16 6 2.5874 -0.5220 3.5559 17 6 3.8614 -0.5807 3.9884 18 7 3.8904 -1.3427 5.0918 19 6 2.6828 -1.7589 5.3593 20 7 1.8395 -1.2701 4.4246 21 6 0.3947 -1.5013 4.3514 22 6 -0.2941 -1.5366 5.7259 23 6 -1.1414 -2.6998 5.1840 24 6 0.0145 -2.9847 4.2105 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 3.8532 0.4369 -1.3574 31 1 3.9994 -1.0729 -0.4260 32 1 7.2197 -0.8027 -2.1911 33 1 1.4496 -1.4980 1.4100 34 1 1.0871 0.6162 2.5525 35 1 2.7589 1.0461 2.1182 36 1 4.7108 -0.0982 3.5279 37 1 2.4041 -2.3903 6.1900 38 1 -0.1017 -0.8528 3.6294 39 1 0.3712 -1.8234 6.5404 40 1 -0.8735 -0.6402 5.9470 41 1 -2.0588 -2.3789 4.6904 42 1 -1.3065 -3.4953 5.9106 43 1 -0.3158 -3.2575 3.2082 44 1 0.7641 -3.6674 4.6106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:53 Heat of formation + Delta-G solvation = 47.936207 kcal Electronic energy + Delta-G solvation = -21698.750715 eV Core-core repulsion = 18651.336889 eV Total energy + Delta-G solvation = -3047.413826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.15387 -39.43930 -38.60149 -35.41323 -33.90427 -33.07634 -31.26837 -29.56567 -27.02935 -26.69751 -26.25549 -25.62354 -23.14776 -22.71100 -21.59552 -21.07361 -19.92111 -18.43974 -18.26922 -16.89137 -16.54096 -16.49692 -16.07538 -15.85971 -15.50241 -15.00914 -14.61045 -14.46142 -14.20901 -14.11856 -13.74061 -13.58791 -13.45276 -13.26507 -13.20412 -13.02244 -12.83757 -12.58033 -12.31301 -12.13019 -11.84288 -11.63892 -11.52439 -11.49321 -11.21163 -11.01036 -10.88580 -10.47807 -10.38034 -9.39891 -9.10609 -8.12495 -6.23148 1.03537 1.39304 1.41444 1.52071 1.86316 2.19449 2.44084 3.19727 3.33432 3.40057 3.54812 3.70869 3.78572 3.84916 3.86240 4.00421 4.10414 4.27416 4.36162 4.46179 4.54659 4.66265 4.69245 4.70267 4.78556 4.86755 4.96682 4.97502 5.01257 5.05061 5.06967 5.11092 5.28157 5.32829 5.47277 5.48263 5.59881 5.79784 5.89691 6.04536 6.20646 6.35488 6.36990 6.54294 6.97504 7.14413 7.44996 8.98659 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.003931 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.965425 B = 7121.172394 C = 7741.315812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.065 0.935 4 C -0.087 4.087 5 C 0.038 3.962 6 C -0.543 4.543 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.264 1.264 14 N -0.685 5.685 15 C 0.147 3.853 16 C -0.015 4.015 17 C -0.043 4.043 18 N -0.535 5.535 19 C 0.185 3.815 20 N -0.437 5.437 21 C 0.092 3.908 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.148 4.148 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.052 0.948 30 H -0.022 1.022 31 H 0.000 1.000 32 H 0.260 0.740 33 H 0.339 0.661 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.152 0.848 37 H 0.233 0.767 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 -1.225 16.146 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.001 3.999 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.188 1.188 14 N -0.317 5.317 15 C 0.017 3.983 16 C -0.131 4.131 17 C -0.191 4.191 18 N -0.254 5.254 19 C -0.097 4.097 20 N -0.120 5.120 21 C -0.010 4.010 22 C -0.175 4.175 23 C -0.161 4.161 24 C -0.187 4.187 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.071 0.929 30 H -0.004 1.004 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.157 0.843 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.170 0.830 37 H 0.249 0.751 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.592 -1.303 16.446 24.856 hybrid contribution -0.345 0.012 -1.149 1.200 sum -18.937 -1.292 15.297 24.378 Atomic orbital electron populations 1.22382 0.94987 1.02499 1.02756 1.21549 0.93577 0.97106 0.89630 0.91659 1.21449 0.96413 0.98958 0.95690 1.18823 0.92345 0.93864 0.94878 1.21824 0.92473 1.34383 1.09433 0.92629 1.25965 0.97464 0.96559 0.99977 1.70130 1.02519 1.45738 1.38911 0.85524 0.77530 0.79010 0.79430 1.19675 1.21001 1.18806 1.60385 1.58679 1.09526 1.03101 1.20184 0.99712 0.93462 0.84924 1.21168 0.92326 1.02980 0.96605 1.22114 0.96347 1.04132 0.96516 1.70224 1.23035 1.15279 1.16837 1.25275 0.84389 1.02725 0.97338 1.45576 1.09019 1.36592 1.20789 1.23537 0.75908 0.99595 1.01971 1.23390 0.98717 1.00765 0.94644 1.22685 0.96681 0.98259 0.98490 1.23446 0.99362 0.93980 1.01878 0.91549 0.91461 0.91995 0.93711 0.92927 1.00381 0.98107 0.93112 0.84294 0.92654 0.90075 0.83014 0.75062 0.85936 0.88629 0.89421 0.88363 0.89117 0.90394 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 9.16 71.98 0.66 -3.05 16 2 C 0.09 2.87 2.59 44.91 0.12 2.99 16 3 H 0.07 2.18 7.80 -2.39 -0.02 2.16 16 4 C -0.09 -3.58 4.83 30.60 0.15 -3.44 16 5 C 0.04 2.09 4.86 29.85 0.15 2.24 16 6 C -0.54 -32.32 9.11 25.60 0.23 -32.08 16 7 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 8 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 9 N -0.93 -59.71 13.29 21.45 0.28 -59.42 16 10 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 14 N -0.69 -21.74 5.69 -495.60 -2.82 -24.57 16 15 C 0.15 4.02 5.64 85.56 0.48 4.50 16 16 C -0.02 -0.45 6.46 40.95 0.26 -0.18 16 17 C -0.04 -1.51 11.79 83.52 0.98 -0.53 16 18 N -0.54 -17.97 11.25 -200.31 -2.25 -20.23 16 19 C 0.19 4.53 11.37 180.26 2.05 6.58 16 20 N -0.44 -9.88 2.94 -489.43 -1.44 -11.32 16 21 C 0.09 1.32 4.53 45.52 0.21 1.53 16 22 C -0.14 -1.24 7.63 31.12 0.24 -1.00 16 23 C -0.12 -0.87 8.08 31.12 0.25 -0.62 16 24 C -0.15 -1.81 7.76 31.12 0.24 -1.57 16 25 H 0.07 1.18 7.45 -2.39 -0.02 1.16 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 28 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 31 H 0.00 0.03 7.75 -2.39 -0.02 0.01 16 32 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.34 9.74 8.46 -89.69 -0.76 8.98 16 34 H 0.06 1.19 6.72 -2.39 -0.02 1.17 16 35 H 0.08 2.44 8.06 -2.38 -0.02 2.42 16 36 H 0.15 5.60 8.06 -2.91 -0.02 5.57 16 37 H 0.23 3.59 7.43 -2.91 -0.02 3.57 16 38 H 0.12 1.63 7.21 -2.39 -0.02 1.61 16 39 H 0.10 0.82 6.92 -2.38 -0.02 0.80 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 1.18 7.90 -2.39 -0.02 1.16 16 Total: -1.00 -75.55 356.40 2.49 -73.06 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.21 Total: 18.57 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 6.48 Total: -24.32 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -6.23 Total: -115.54 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -75.55 2.49 -73.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.998 kcal (2) G-P(sol) polarization free energy of solvation -75.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds