Wall clock time and date at job start Mon Mar 30 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46893 * 2 1 4 4 C 1.53002 * 109.46749 * 120.00017 * 2 1 3 5 5 C 1.52999 * 109.46651 * 185.00054 * 4 2 1 6 6 C 1.50705 * 109.46801 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00141 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99708 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00217 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99937 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47192 * 89.99575 * 10 8 6 12 12 H 1.48493 * 109.46884 * 209.99854 * 10 8 6 13 13 H 1.48503 * 109.46811 * 329.99789 * 10 8 6 14 14 N 1.46895 * 109.46911 * 239.99945 * 2 1 3 15 15 C 1.46906 * 110.99976 * 84.99959 * 14 2 1 16 16 C 1.50704 * 109.46928 * 179.97438 * 15 14 2 17 17 C 1.34664 * 126.58651 * 95.04500 * 16 15 14 18 18 N 1.34134 * 108.01786 * 179.74146 * 17 16 15 19 19 C 1.30496 * 109.25675 * 0.37372 * 18 17 16 20 20 N 1.35047 * 108.70161 * 359.62603 * 19 18 17 21 21 C 1.46498 * 126.40163 * 180.25111 * 20 19 18 22 22 C 1.53780 * 113.61229 * 37.46967 * 21 20 19 23 23 C 1.53782 * 87.07982 * 220.02126 * 22 21 20 24 24 C 1.53770 * 87.08137 * 25.43521 * 23 22 21 25 25 H 1.09009 * 109.46716 * 59.99865 * 1 2 3 26 26 H 1.08997 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47052 * 300.00382 * 1 2 3 28 28 H 1.08998 * 109.47222 * 305.00094 * 4 2 1 29 29 H 1.09003 * 109.47129 * 65.00235 * 4 2 1 30 30 H 1.09003 * 109.46886 * 299.99966 * 5 4 2 31 31 H 1.08988 * 109.47516 * 59.99874 * 5 4 2 32 32 H 0.97001 * 120.00255 * 180.02562 * 9 8 6 33 33 H 1.00902 * 111.00401 * 321.05055 * 14 2 1 34 34 H 1.09008 * 109.46716 * 60.00122 * 15 14 2 35 35 H 1.08993 * 109.47426 * 299.99749 * 15 14 2 36 36 H 1.07998 * 125.99171 * 359.92955 * 17 16 15 37 37 H 1.08002 * 125.65353 * 179.89694 * 19 18 17 38 38 H 1.08997 * 112.84760 * 168.78426 * 21 20 19 39 39 H 1.08995 * 113.62029 * 334.57441 * 22 21 20 40 40 H 1.09002 * 113.61125 * 105.47221 * 22 21 20 41 41 H 1.09003 * 113.61263 * 270.88639 * 23 22 21 42 42 H 1.08999 * 113.60967 * 139.98673 * 23 22 21 43 43 H 1.09002 * 113.61584 * 220.01647 * 24 23 22 44 44 H 1.09003 * 113.61781 * 89.11677 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3243 2.5439 7 1 3.3687 -1.8046 3.2130 8 6 5.4184 -1.3605 2.8157 9 7 6.2689 -0.7751 2.0011 10 14 6.0411 -2.2412 4.3409 11 1 6.3215 -3.6619 4.0123 12 1 7.2871 -1.5876 4.8157 13 1 5.0095 -2.1740 5.4070 14 7 2.0197 -0.6925 -1.1994 15 6 2.0824 0.2226 -2.3469 16 6 2.5885 -0.5216 -3.5558 17 6 1.8395 -1.0990 -4.5144 18 7 2.6688 -1.6504 -5.4130 19 6 3.9031 -1.4435 -5.0433 20 7 3.8977 -0.7398 -3.8907 21 6 5.0733 -0.2929 -3.1393 22 6 6.2421 0.1540 -4.0331 23 6 7.1736 -0.5496 -3.0319 24 6 5.9771 -1.4443 -2.6678 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6053 -0.2618 2.1370 29 1 1.7516 -1.7716 1.2056 30 1 3.9994 -1.0728 0.4260 31 1 3.8532 0.4368 1.3573 32 1 7.2196 -0.8009 2.1921 33 1 1.4495 -1.4979 -1.4101 34 1 2.7589 1.0462 -2.1182 35 1 1.0871 0.6163 -2.5526 36 1 0.7604 -1.1128 -4.5546 37 1 4.7832 -1.7758 -5.5737 38 1 4.8267 0.4192 -2.3519 39 1 6.2366 -0.3053 -5.0215 40 1 6.3760 1.2352 -4.0685 41 1 7.5025 0.0934 -2.2155 42 1 7.9945 -1.0890 -3.5043 43 1 5.8970 -1.6535 -1.6011 44 1 5.8991 -2.3407 -3.2830 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:56 Heat of formation + Delta-G solvation = 64.384764 kcal Electronic energy + Delta-G solvation = -22121.508270 eV Core-core repulsion = 19074.807707 eV Total energy + Delta-G solvation = -3046.700563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.02331 -38.37455 -37.23933 -33.51051 -32.44550 -31.77460 -29.59314 -28.33074 -25.64883 -25.27078 -25.16767 -24.32049 -21.62982 -21.34735 -20.22492 -19.79088 -18.85921 -17.23115 -16.15157 -15.57872 -15.49105 -14.89781 -14.62327 -14.46342 -14.25492 -13.75437 -13.46282 -13.16321 -12.80235 -12.56688 -12.51259 -12.32567 -12.28260 -12.15440 -11.72601 -11.38289 -11.17763 -11.08355 -10.88241 -10.62278 -10.48340 -10.42625 -10.27238 -9.76330 -9.67722 -9.25986 -9.24543 -8.95628 -8.30060 -8.22800 -7.89821 -5.94306 -3.94130 2.18230 2.99245 3.31720 3.33510 3.39818 3.43246 4.41734 4.50083 4.53822 4.63651 4.77072 4.84481 4.89873 4.98244 5.26131 5.32249 5.42024 5.43159 5.54069 5.57373 5.60873 5.65709 5.66320 5.73532 5.85433 5.92621 6.02388 6.08673 6.26069 6.30710 6.37158 6.41860 6.62812 6.67240 6.85944 6.92743 7.26065 7.39001 7.45820 7.75243 7.79693 8.02378 8.16520 8.25019 8.53283 9.13813 9.68510 11.16644 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.005717 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.575617 B = 4896.280938 C = 6479.775446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.071 0.929 4 C -0.099 4.099 5 C 0.032 3.968 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.667 5.667 15 C 0.133 3.867 16 C -0.008 4.008 17 C -0.035 4.035 18 N -0.499 5.499 19 C 0.176 3.824 20 N -0.427 5.427 21 C 0.113 3.887 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.141 4.141 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.005 0.995 32 H 0.257 0.743 33 H 0.339 0.661 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.162 0.838 37 H 0.197 0.803 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 3.075 -12.170 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.137 4.137 5 C -0.005 4.005 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.713 3.287 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 N -0.298 5.298 15 C 0.003 3.997 16 C -0.125 4.125 17 C -0.184 4.184 18 N -0.217 5.217 19 C -0.106 4.106 20 N -0.108 5.108 21 C 0.010 3.990 22 C -0.185 4.185 23 C -0.173 4.173 24 C -0.179 4.179 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.179 0.821 37 H 0.213 0.787 38 H 0.145 0.855 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.058 2.829 -12.647 13.315 hybrid contribution -0.251 -0.004 1.400 1.423 sum -3.308 2.825 -11.246 12.058 Atomic orbital electron populations 1.22541 0.98462 1.01674 1.01318 1.21747 0.91087 0.98231 0.91437 0.91086 1.21633 1.00596 0.98450 0.93008 1.18970 0.88319 0.96277 0.96930 1.21351 0.91851 1.33848 1.08464 0.93180 1.24953 0.97103 0.95715 0.96453 1.69955 1.02057 1.44447 1.37022 0.86712 0.78282 0.79865 0.83817 1.20817 1.21371 1.20052 1.60574 1.58060 1.08860 1.02338 1.20257 0.98878 0.94086 0.86471 1.21187 0.83850 1.07323 1.00093 1.21973 0.99158 1.03560 0.93698 1.70243 0.99902 1.22896 1.28650 1.24611 0.97511 0.99951 0.88563 1.45436 1.06219 1.39805 1.19310 1.23190 0.81587 0.99263 0.94944 1.23424 0.95007 1.01560 0.98502 1.22691 0.96562 0.99035 0.99058 1.23335 0.93893 0.96381 1.04334 0.93632 0.92689 0.92233 0.93481 0.93464 0.95075 0.97644 0.93353 0.84247 0.90634 0.93465 0.82067 0.78654 0.85543 0.89618 0.90608 0.88962 0.90796 0.88495 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.16 37.16 0.34 -2.00 16 2 C 0.08 1.34 2.59 -67.71 -0.18 1.17 16 3 H 0.07 1.16 7.80 -51.93 -0.40 0.76 16 4 C -0.10 -1.98 4.83 -26.73 -0.13 -2.11 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 10 Si 0.88 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.67 -10.36 5.69 -107.98 -0.61 -10.97 16 15 C 0.13 1.81 5.65 -4.97 -0.03 1.79 16 16 C -0.01 -0.12 6.47 -81.60 -0.53 -0.64 16 17 C -0.03 -0.51 11.79 -17.81 -0.21 -0.72 16 18 N -0.50 -7.82 11.25 -14.66 -0.16 -7.99 16 19 C 0.18 2.42 11.37 -90.37 -1.03 1.39 16 20 N -0.43 -5.99 2.94 -106.06 -0.31 -6.30 16 21 C 0.11 1.52 4.53 -67.12 -0.30 1.21 16 22 C -0.15 -1.56 7.63 -25.92 -0.20 -1.76 16 23 C -0.14 -1.58 8.08 -25.92 -0.21 -1.79 16 24 C -0.14 -1.98 7.76 -25.92 -0.20 -2.18 16 25 H 0.04 0.52 7.45 -51.92 -0.39 0.13 16 26 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.83 7.75 -51.93 -0.40 0.43 16 31 H 0.01 0.14 8.14 -51.94 -0.42 -0.28 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.34 5.10 8.46 -39.29 -0.33 4.76 16 34 H 0.08 1.06 7.33 -51.92 -0.38 0.68 16 35 H 0.05 0.57 7.44 -51.93 -0.39 0.18 16 36 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 37 H 0.20 2.07 7.43 -52.49 -0.39 1.68 16 38 H 0.13 1.89 7.20 -51.93 -0.37 1.52 16 39 H 0.09 0.80 6.92 -51.93 -0.36 0.44 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -30.56 356.40 -10.82 -41.38 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.60 Total: 5.45 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -3.22 Total: -18.24 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.36 Total: -50.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.56 -10.82 -41.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.764 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds