Wall clock time and date at job start Mon Mar 30 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46893 * 2 1 4 4 C 1.53002 * 109.46749 * 120.00017 * 2 1 3 5 5 C 1.52999 * 109.46651 * 185.00054 * 4 2 1 6 6 C 1.50705 * 109.46801 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00141 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99708 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00217 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99937 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47192 * 89.99575 * 10 8 6 12 12 H 1.48493 * 109.46884 * 209.99854 * 10 8 6 13 13 H 1.48503 * 109.46811 * 329.99789 * 10 8 6 14 14 N 1.46895 * 109.46911 * 239.99945 * 2 1 3 15 15 C 1.46906 * 110.99976 * 84.99959 * 14 2 1 16 16 C 1.50704 * 109.46928 * 179.97438 * 15 14 2 17 17 C 1.34664 * 126.58651 * 95.04500 * 16 15 14 18 18 N 1.34134 * 108.01786 * 179.74146 * 17 16 15 19 19 C 1.30496 * 109.25675 * 0.37372 * 18 17 16 20 20 N 1.35047 * 108.70161 * 359.62603 * 19 18 17 21 21 C 1.46498 * 126.40163 * 180.25111 * 20 19 18 22 22 C 1.53780 * 113.61229 * 37.46967 * 21 20 19 23 23 C 1.53782 * 87.07982 * 220.02126 * 22 21 20 24 24 C 1.53770 * 87.08137 * 25.43521 * 23 22 21 25 25 H 1.09009 * 109.46716 * 59.99865 * 1 2 3 26 26 H 1.08997 * 109.46893 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47052 * 300.00382 * 1 2 3 28 28 H 1.08998 * 109.47222 * 305.00094 * 4 2 1 29 29 H 1.09003 * 109.47129 * 65.00235 * 4 2 1 30 30 H 1.09003 * 109.46886 * 299.99966 * 5 4 2 31 31 H 1.08988 * 109.47516 * 59.99874 * 5 4 2 32 32 H 0.97001 * 120.00255 * 180.02562 * 9 8 6 33 33 H 1.00902 * 111.00401 * 321.05055 * 14 2 1 34 34 H 1.09008 * 109.46716 * 60.00122 * 15 14 2 35 35 H 1.08993 * 109.47426 * 299.99749 * 15 14 2 36 36 H 1.07998 * 125.99171 * 359.92955 * 17 16 15 37 37 H 1.08002 * 125.65353 * 179.89694 * 19 18 17 38 38 H 1.08997 * 112.84760 * 168.78426 * 21 20 19 39 39 H 1.08995 * 113.62029 * 334.57441 * 22 21 20 40 40 H 1.09002 * 113.61125 * 105.47221 * 22 21 20 41 41 H 1.09003 * 113.61263 * 270.88639 * 23 22 21 42 42 H 1.08999 * 113.60967 * 139.98673 * 23 22 21 43 43 H 1.09002 * 113.61584 * 220.01647 * 24 23 22 44 44 H 1.09003 * 113.61781 * 89.11677 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3243 2.5439 7 1 3.3687 -1.8046 3.2130 8 6 5.4184 -1.3605 2.8157 9 7 6.2689 -0.7751 2.0011 10 14 6.0411 -2.2412 4.3409 11 1 6.3215 -3.6619 4.0123 12 1 7.2871 -1.5876 4.8157 13 1 5.0095 -2.1740 5.4070 14 7 2.0197 -0.6925 -1.1994 15 6 2.0824 0.2226 -2.3469 16 6 2.5885 -0.5216 -3.5558 17 6 1.8395 -1.0990 -4.5144 18 7 2.6688 -1.6504 -5.4130 19 6 3.9031 -1.4435 -5.0433 20 7 3.8977 -0.7398 -3.8907 21 6 5.0733 -0.2929 -3.1393 22 6 6.2421 0.1540 -4.0331 23 6 7.1736 -0.5496 -3.0319 24 6 5.9771 -1.4443 -2.6678 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6053 -0.2618 2.1370 29 1 1.7516 -1.7716 1.2056 30 1 3.9994 -1.0728 0.4260 31 1 3.8532 0.4368 1.3573 32 1 7.2196 -0.8009 2.1921 33 1 1.4495 -1.4979 -1.4101 34 1 2.7589 1.0462 -2.1182 35 1 1.0871 0.6163 -2.5526 36 1 0.7604 -1.1128 -4.5546 37 1 4.7832 -1.7758 -5.5737 38 1 4.8267 0.4192 -2.3519 39 1 6.2366 -0.3053 -5.0215 40 1 6.3760 1.2352 -4.0685 41 1 7.5025 0.0934 -2.2155 42 1 7.9945 -1.0890 -3.5043 43 1 5.8970 -1.6535 -1.6011 44 1 5.8991 -2.3407 -3.2830 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:56 Heat of formation + Delta-G solvation = 47.762012 kcal Electronic energy + Delta-G solvation = -22122.229087 eV Core-core repulsion = 19074.807707 eV Total energy + Delta-G solvation = -3047.421380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.11295 -39.42220 -38.56761 -35.39788 -33.84630 -33.08841 -31.23336 -29.52598 -27.00989 -26.67238 -26.24809 -25.61719 -23.13535 -22.68313 -21.50367 -21.10098 -19.94000 -18.40269 -18.24041 -16.79587 -16.62162 -16.48201 -16.00143 -15.83954 -15.45826 -14.92954 -14.59447 -14.43494 -14.29947 -14.03293 -13.79580 -13.57847 -13.45397 -13.27626 -13.15142 -12.98978 -12.85747 -12.55620 -12.33322 -12.12537 -11.82974 -11.64197 -11.53646 -11.46951 -11.22021 -10.97626 -10.88452 -10.46580 -10.35812 -9.37712 -9.10134 -8.12691 -6.21446 1.08757 1.39343 1.39762 1.50252 1.92645 2.20990 2.43383 3.19543 3.37224 3.40421 3.58805 3.70070 3.83480 3.88428 3.90251 4.06735 4.16591 4.35430 4.39562 4.49212 4.54764 4.61009 4.64247 4.71020 4.79301 4.82618 4.97441 4.99560 5.01683 5.06923 5.08039 5.11166 5.30071 5.35201 5.47233 5.57937 5.60391 5.83440 5.89682 6.03574 6.22278 6.35758 6.36873 6.56167 6.96238 7.15402 7.45636 8.97709 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013923 B = 0.005717 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.575617 B = 4896.280938 C = 6479.775446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 H 0.064 0.936 4 C -0.090 4.090 5 C 0.045 3.955 6 C -0.544 4.544 7 H 0.050 0.950 8 C 0.006 3.994 9 N -0.923 5.923 10 Si 0.952 3.048 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.267 1.267 14 N -0.686 5.686 15 C 0.142 3.858 16 C -0.024 4.024 17 C -0.040 4.040 18 N -0.527 5.527 19 C 0.179 3.821 20 N -0.431 5.431 21 C 0.109 3.891 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.144 4.144 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.004 0.996 31 H -0.023 1.023 32 H 0.260 0.740 33 H 0.342 0.658 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.179 0.821 37 H 0.227 0.773 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.045 0.955 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 2.903 -12.990 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 H 0.082 0.918 4 C -0.128 4.128 5 C 0.008 3.992 6 C -0.582 4.582 7 H 0.068 0.932 8 C -0.192 4.192 9 N -0.563 5.563 10 Si 0.778 3.222 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.192 1.192 14 N -0.317 5.317 15 C 0.012 3.988 16 C -0.140 4.140 17 C -0.188 4.188 18 N -0.245 5.245 19 C -0.103 4.103 20 N -0.111 5.111 21 C 0.006 3.994 22 C -0.163 4.163 23 C -0.166 4.166 24 C -0.182 4.182 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.023 0.977 31 H -0.005 1.005 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.197 0.803 37 H 0.243 0.757 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.064 0.936 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.467 2.664 -13.463 14.155 hybrid contribution -0.097 0.027 1.661 1.664 sum -3.564 2.690 -11.802 12.619 Atomic orbital electron populations 1.22396 0.95323 1.02440 1.02651 1.21508 0.93403 0.96934 0.89768 0.91813 1.21473 0.96857 0.98877 0.95580 1.18760 0.91886 0.93713 0.94879 1.21775 0.92455 1.34458 1.09521 0.93183 1.25809 0.97367 0.96400 0.99601 1.70083 1.02384 1.45241 1.38630 0.85645 0.77854 0.78685 0.80033 1.20181 1.20693 1.19162 1.60438 1.58703 1.09610 1.02996 1.20192 0.99817 0.93233 0.85529 1.21353 0.84215 1.07977 1.00438 1.22308 1.00070 1.03058 0.93385 1.70259 1.00795 1.23963 1.29489 1.25232 0.98104 0.98844 0.88157 1.45533 1.06213 1.39918 1.19479 1.23146 0.82250 0.98523 0.95490 1.23350 0.91988 1.02355 0.98577 1.22634 0.96560 0.98370 0.99055 1.23298 0.96114 0.97578 1.01246 0.91507 0.92195 0.91674 0.93258 0.93871 0.97715 1.00454 0.93124 0.83878 0.91735 0.91072 0.80348 0.75664 0.87989 0.87253 0.89459 0.90594 0.88471 0.93589 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 9.16 71.98 0.66 -3.37 16 2 C 0.09 2.96 2.59 44.92 0.12 3.08 16 3 H 0.06 2.11 7.80 -2.39 -0.02 2.09 16 4 C -0.09 -3.67 4.83 30.59 0.15 -3.52 16 5 C 0.04 2.36 4.86 29.85 0.15 2.50 16 6 C -0.54 -31.37 9.11 25.60 0.23 -31.13 16 7 H 0.05 2.81 7.74 -2.92 -0.02 2.79 16 8 C 0.01 0.36 5.46 84.65 0.46 0.82 16 9 N -0.92 -55.28 13.29 21.45 0.28 -54.99 16 10 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 N -0.69 -21.48 5.69 -495.55 -2.82 -24.30 16 15 C 0.14 3.82 5.65 85.56 0.48 4.31 16 16 C -0.02 -0.67 6.47 40.95 0.26 -0.40 16 17 C -0.04 -1.11 11.79 83.52 0.98 -0.12 16 18 N -0.53 -15.76 11.25 -200.31 -2.25 -18.02 16 19 C 0.18 4.62 11.37 180.26 2.05 6.67 16 20 N -0.43 -11.86 2.94 -489.45 -1.44 -13.30 16 21 C 0.11 2.97 4.53 45.52 0.21 3.17 16 22 C -0.12 -2.45 7.63 31.12 0.24 -2.21 16 23 C -0.13 -2.94 8.08 31.12 0.25 -2.69 16 24 C -0.14 -4.19 7.76 31.12 0.24 -3.95 16 25 H 0.07 1.33 7.45 -2.38 -0.02 1.32 16 26 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.00 0.25 7.75 -2.39 -0.02 0.24 16 31 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 32 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.34 10.18 8.46 -89.69 -0.76 9.43 16 34 H 0.06 1.87 7.33 -2.38 -0.02 1.85 16 35 H 0.07 1.57 7.44 -2.39 -0.02 1.56 16 36 H 0.18 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.23 4.11 7.43 -2.91 -0.02 4.09 16 38 H 0.10 3.27 7.20 -2.39 -0.02 3.26 16 39 H 0.11 1.67 6.92 -2.39 -0.02 1.66 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.09 2.44 7.90 -2.39 -0.02 2.42 16 Total: -1.00 -67.72 356.40 2.49 -65.24 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.21 Total: 25.53 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 6.48 Total: -26.84 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -6.23 Total: -110.62 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.72 2.49 -65.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.000 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds