Wall clock time and date at job start Mon Mar 30 2020 02:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46850 * 239.99678 * 2 1 3 5 5 C 1.53006 * 109.46726 * 175.00307 * 4 2 1 6 6 C 1.50703 * 109.46644 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00525 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99602 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00036 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00017 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47157 * 90.00226 * 10 8 6 12 12 H 1.48508 * 109.47051 * 210.00094 * 10 8 6 13 13 H 1.48499 * 109.47294 * 329.99827 * 10 8 6 14 14 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 15 15 C 1.46901 * 110.99870 * 274.99984 * 14 2 1 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 2 17 17 C 1.34668 * 125.99426 * 94.99625 * 16 15 14 18 18 N 1.36875 * 106.81878 * 179.97438 * 17 16 15 19 19 C 1.46503 * 126.39775 * 179.97438 * 18 17 16 20 20 C 1.53785 * 113.61576 * 219.14145 * 19 18 17 21 21 C 1.53948 * 87.01929 * 220.04412 * 20 19 18 22 22 C 1.53777 * 113.61401 * 121.53671 * 19 18 17 23 23 C 1.35043 * 107.20760 * 0.02562 * 18 17 16 24 24 N 1.30504 * 108.69777 * 359.75989 * 23 18 17 25 25 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.08994 * 109.47174 * 295.00027 * 4 2 1 29 29 H 1.08993 * 109.47332 * 55.00709 * 4 2 1 30 30 H 1.09003 * 109.47097 * 299.99468 * 5 4 2 31 31 H 1.08997 * 109.47291 * 60.00410 * 5 4 2 32 32 H 0.96998 * 120.00467 * 180.02562 * 9 8 6 33 33 H 1.00901 * 110.99869 * 151.04696 * 14 2 1 34 34 H 1.09004 * 109.47031 * 299.99620 * 15 14 2 35 35 H 1.08995 * 109.47111 * 59.99900 * 15 14 2 36 36 H 1.08004 * 126.58692 * 359.97438 * 17 16 15 37 37 H 1.09000 * 112.84659 * 350.33745 * 19 18 17 38 38 H 1.09001 * 113.61372 * 334.57010 * 20 19 18 39 39 H 1.09003 * 113.61095 * 105.46954 * 20 19 18 40 40 H 1.08998 * 113.54291 * 270.81011 * 21 20 19 41 41 H 1.09007 * 113.66402 * 139.93160 * 21 20 19 42 42 H 1.09008 * 113.61081 * 254.52686 * 22 19 18 43 43 H 1.08991 * 113.61972 * 25.42875 * 22 19 18 44 44 H 1.08000 * 125.64884 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0670 -1.3234 -2.5444 7 1 3.3686 -1.8038 -3.2135 8 6 5.4183 -1.3595 -2.8163 9 7 5.8567 -1.9795 -3.8900 10 14 6.6263 -0.5278 -1.6593 11 1 7.0621 -1.4948 -0.6200 12 1 7.8080 -0.0621 -2.4288 13 1 5.9692 0.6346 -1.0096 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2227 2.3469 16 6 2.5885 -0.5214 3.5557 17 6 3.8666 -0.5704 3.9772 18 7 3.8829 -1.3493 5.1026 19 6 5.0583 -1.6864 5.9095 20 6 5.0596 -3.1371 6.4200 21 6 5.6112 -2.5848 7.7469 22 6 4.9422 -1.2497 7.3794 23 6 2.6134 -1.7499 5.3296 24 7 1.8440 -1.2470 4.4032 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -1.7715 -1.2055 29 1 1.6054 -0.2618 -2.1369 30 1 3.8532 0.4369 -1.3574 31 1 3.9994 -1.0730 -0.4259 32 1 6.8073 -2.0052 -4.0811 33 1 2.9173 -1.1205 1.0288 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6164 2.5525 36 1 4.7155 -0.0879 3.5158 37 1 5.9948 -1.3885 5.4381 38 1 4.0631 -3.5700 6.5078 39 1 5.7588 -3.7852 5.8916 40 1 6.6996 -2.5337 7.7784 41 1 5.1831 -3.0592 8.6300 42 1 5.5467 -0.3764 7.6245 43 1 3.9136 -1.1656 7.7301 44 1 2.2882 -2.3791 6.1449 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:58 Heat of formation + Delta-G solvation = 49.477450 kcal Electronic energy + Delta-G solvation = -21235.777803 eV Core-core repulsion = 18188.430810 eV Total energy + Delta-G solvation = -3047.346993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.09746 -39.53404 -38.57598 -35.34150 -34.00997 -32.95174 -31.50036 -29.83101 -27.32505 -26.70422 -26.52926 -25.30901 -22.86470 -22.46649 -21.41843 -21.08035 -19.87304 -18.93515 -18.48530 -16.80128 -16.53028 -16.47529 -16.21040 -15.87751 -15.48345 -15.03286 -14.93722 -14.51802 -14.40929 -14.09462 -13.78622 -13.55201 -13.41078 -13.35431 -13.17052 -13.02677 -12.85507 -12.54565 -12.10327 -11.98888 -11.81346 -11.63778 -11.54668 -11.51264 -11.37727 -11.10943 -10.83770 -10.76567 -10.37463 -9.42459 -9.19110 -8.29698 -6.33722 1.08542 1.32262 1.35531 1.47205 1.90624 2.12311 2.34972 3.05050 3.38623 3.48050 3.52536 3.64131 3.76784 3.83297 3.98752 4.05647 4.18914 4.34100 4.37762 4.45935 4.54513 4.67441 4.68849 4.69726 4.74225 4.88026 4.92662 4.94732 4.96531 5.03138 5.04383 5.05409 5.14966 5.27901 5.43156 5.46274 5.52469 5.55954 5.66502 5.78427 6.27590 6.29104 6.33983 6.50065 6.74290 7.20750 7.30340 8.87500 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.004352 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.083130 B = 6431.932001 C = 7956.809188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.088 3.912 3 H 0.045 0.955 4 C -0.098 4.098 5 C -0.007 4.007 6 C -0.532 4.532 7 H 0.029 0.971 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.953 3.047 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.246 1.246 14 N -0.687 5.687 15 C 0.147 3.853 16 C -0.016 4.016 17 C -0.055 4.055 18 N -0.444 5.444 19 C 0.092 3.908 20 C -0.147 4.147 21 C -0.125 4.125 22 C -0.140 4.140 23 C 0.181 3.819 24 N -0.517 5.517 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.266 0.734 33 H 0.337 0.663 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.184 0.816 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 3.323 27.556 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.021 4.021 3 H 0.063 0.937 4 C -0.136 4.136 5 C -0.044 4.044 6 C -0.570 4.570 7 H 0.047 0.953 8 C -0.195 4.195 9 N -0.594 5.594 10 Si 0.776 3.224 11 H -0.190 1.190 12 H -0.210 1.210 13 H -0.169 1.169 14 N -0.321 5.321 15 C 0.018 3.982 16 C -0.145 4.145 17 C -0.190 4.190 18 N -0.125 5.125 19 C -0.010 4.010 20 C -0.185 4.185 21 C -0.163 4.163 22 C -0.178 4.178 23 C -0.101 4.101 24 N -0.236 5.236 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.201 0.799 37 H 0.146 0.854 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.848 2.897 27.645 27.857 hybrid contribution 2.238 0.551 -0.600 2.381 sum 0.389 3.448 27.044 27.266 Atomic orbital electron populations 1.21710 0.93718 1.01777 1.01501 1.21557 0.96271 0.95515 0.88769 0.93732 1.21520 0.95729 0.99774 0.96535 1.19510 0.94324 0.95788 0.94800 1.21508 0.92714 1.34216 1.08573 0.95295 1.26070 1.00696 0.95710 0.96990 1.70080 1.15260 1.45371 1.28647 0.85610 0.77850 0.79981 0.78918 1.19041 1.20993 1.16897 1.60586 1.33756 1.33396 1.04342 1.20071 1.00421 0.91772 0.85940 1.20628 0.90715 1.04029 0.99107 1.22779 1.00025 1.03445 0.92747 1.45708 1.09222 1.36633 1.20940 1.23580 0.87276 0.98862 0.91298 1.23462 1.03203 0.94198 0.97626 1.22720 1.01447 0.95021 0.97101 1.23394 1.02641 0.99571 0.92211 1.25285 0.79793 1.03396 1.01646 1.70123 1.34607 1.13516 1.05355 0.93157 0.92326 0.91685 0.93430 0.92332 0.96437 0.96451 0.92529 0.84319 0.93533 0.90439 0.79906 0.85435 0.88961 0.90248 0.88465 0.89152 0.89763 0.89314 0.75577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.41 71.98 0.68 -3.10 16 2 C 0.09 2.97 2.65 44.91 0.12 3.09 16 3 H 0.04 1.45 7.80 -2.38 -0.02 1.43 16 4 C -0.10 -4.01 4.74 30.60 0.15 -3.86 16 5 C -0.01 -0.32 3.87 29.85 0.12 -0.20 16 6 C -0.53 -31.54 9.66 25.60 0.25 -31.29 16 7 H 0.03 1.89 7.99 -2.92 -0.02 1.87 16 8 C 0.00 0.10 5.47 84.66 0.46 0.56 16 9 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 10 Si 0.95 44.42 27.47 68.60 1.88 46.30 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 14 N -0.69 -23.47 6.30 -495.56 -3.12 -26.59 16 15 C 0.15 4.40 6.02 85.56 0.52 4.92 16 16 C -0.02 -0.47 6.60 41.39 0.27 -0.20 16 17 C -0.06 -1.39 11.49 83.09 0.95 -0.43 16 18 N -0.44 -9.08 2.94 -503.80 -1.48 -10.56 16 19 C 0.09 1.20 4.63 45.52 0.21 1.41 16 20 C -0.15 -1.50 7.66 31.18 0.24 -1.26 16 21 C -0.13 -0.79 8.09 31.18 0.25 -0.54 16 22 C -0.14 -1.25 7.76 31.12 0.24 -1.01 16 23 C 0.18 4.10 11.32 180.26 2.04 6.14 16 24 N -0.52 -15.85 11.25 -188.32 -2.12 -17.97 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.57 7.45 -2.38 -0.02 1.55 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 31 H 0.02 0.80 5.86 -2.39 -0.01 0.79 16 32 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.34 12.47 6.46 -89.69 -0.58 11.89 16 34 H 0.05 1.27 8.06 -2.39 -0.02 1.26 16 35 H 0.08 2.30 7.44 -2.39 -0.02 2.28 16 36 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 0.95 7.00 -2.39 -0.02 0.94 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 42 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.09 0.86 7.86 -2.39 -0.02 0.84 16 44 H 0.23 3.34 7.51 -2.91 -0.02 3.31 16 Total: -1.00 -73.39 352.31 2.29 -71.11 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.33 Total: 24.06 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 6.49 Total: -25.78 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -6.42 Total: -115.69 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -73.39 2.29 -71.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.587 kcal (2) G-P(sol) polarization free energy of solvation -73.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds