Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47283 * 2 1 4 4 C 1.53002 * 109.46986 * 239.99810 * 2 1 3 5 5 C 1.53003 * 109.46889 * 174.99739 * 4 2 1 6 6 C 1.50701 * 109.47112 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99929 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00323 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99783 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00225 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47316 * 89.99538 * 10 8 6 12 12 H 1.48501 * 109.47148 * 209.99555 * 10 8 6 13 13 H 1.48505 * 109.47013 * 329.99524 * 10 8 6 14 14 N 1.46901 * 109.47417 * 120.00263 * 2 1 3 15 15 C 1.46896 * 110.99809 * 275.00231 * 14 2 1 16 16 C 1.50705 * 109.47214 * 179.97438 * 15 14 2 17 17 C 1.34666 * 126.59579 * 94.97199 * 16 15 14 18 18 N 1.34121 * 108.02399 * 180.02562 * 17 16 15 19 19 C 1.30504 * 109.25569 * 359.97438 * 18 17 16 20 20 N 1.35039 * 108.70033 * 0.02562 * 19 18 17 21 21 C 1.46494 * 126.39794 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47247 * 265.02399 * 21 20 19 23 23 C 1.52998 * 117.50125 * 243.74578 * 22 21 20 24 24 C 1.53000 * 117.50271 * 175.08613 * 22 21 20 25 25 H 1.08996 * 109.47166 * 59.99721 * 1 2 3 26 26 H 1.09004 * 109.47283 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47134 * 299.99856 * 1 2 3 28 28 H 1.08992 * 109.47502 * 294.99966 * 4 2 1 29 29 H 1.09004 * 109.46742 * 55.00675 * 4 2 1 30 30 H 1.08998 * 109.47657 * 300.00299 * 5 4 2 31 31 H 1.09005 * 109.47183 * 60.00805 * 5 4 2 32 32 H 0.97003 * 120.00009 * 179.97438 * 9 8 6 33 33 H 1.00908 * 110.99671 * 38.95075 * 14 2 1 34 34 H 1.09001 * 109.47597 * 59.99834 * 15 14 2 35 35 H 1.09001 * 109.47080 * 299.99667 * 15 14 2 36 36 H 1.08001 * 125.98583 * 0.05687 * 17 16 15 37 37 H 1.08002 * 125.64666 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47118 * 25.02465 * 21 20 19 39 39 H 1.09006 * 109.47356 * 145.02553 * 21 20 19 40 40 H 1.09010 * 115.54889 * 29.41660 * 22 21 20 41 41 H 1.08997 * 117.49819 * 0.02562 * 23 22 21 42 42 H 1.08999 * 117.50142 * 145.01808 * 23 22 21 43 43 H 1.08998 * 117.50345 * 214.98521 * 24 22 21 44 44 H 1.09008 * 117.49604 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3232 -2.5445 7 1 3.3685 -1.8030 -3.2140 8 6 5.4183 -1.3601 -2.8159 9 7 6.2689 -0.7754 -2.0009 10 14 6.0409 -2.2395 -4.3419 11 1 6.0914 -1.2843 -5.4777 12 1 7.4020 -2.7745 -4.0842 13 1 5.1242 -3.3588 -4.6767 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3468 16 6 2.5874 -0.5219 3.5560 17 6 3.8613 -0.5804 3.9886 18 7 3.8904 -1.3424 5.0919 19 6 2.6826 -1.7581 5.3598 20 7 1.8392 -1.2689 4.4255 21 6 0.3936 -1.4955 4.3555 22 6 0.1062 -2.6694 3.4173 23 6 -0.6900 -2.3776 2.1438 24 6 -1.3447 -3.1400 3.2984 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 3.8532 0.4369 -1.3574 31 1 3.9995 -1.0729 -0.4260 32 1 7.2196 -0.8017 -2.1916 33 1 1.4495 -1.4980 1.4100 34 1 1.0871 0.6162 2.5526 35 1 2.7588 1.0461 2.1182 36 1 4.7107 -0.0977 3.5282 37 1 2.4039 -2.3888 6.1911 38 1 0.0130 -1.7243 5.3509 39 1 -0.0968 -0.5989 3.9762 40 1 0.8875 -3.4274 3.3597 41 1 -1.0088 -1.3491 1.9742 42 1 -0.4329 -2.9437 1.2486 43 1 -1.5181 -4.2075 3.1623 44 1 -2.0946 -2.6135 3.8889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = 72.491968 kcal Electronic energy + Delta-G solvation = -22010.091495 eV Core-core repulsion = 18963.742486 eV Total energy + Delta-G solvation = -3046.349008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.01301 -38.02329 -37.11117 -33.64340 -33.27287 -31.97797 -29.60943 -28.41382 -27.27664 -25.26774 -24.31945 -22.87613 -21.61651 -21.22806 -21.13645 -19.99728 -19.50262 -17.31483 -16.07899 -15.83786 -15.58030 -15.20321 -14.85321 -14.49972 -14.29319 -13.94599 -13.65292 -13.36043 -13.02792 -12.80514 -12.52966 -12.35983 -12.19271 -12.04135 -11.83815 -11.71878 -11.32948 -11.15984 -10.82623 -10.76982 -10.44443 -10.40665 -10.23012 -9.79135 -9.62244 -9.49130 -9.18563 -8.86867 -8.26483 -8.17841 -7.85460 -5.84160 -3.85409 2.09746 2.72294 3.34979 3.39662 3.39826 3.45971 3.48993 4.24520 4.39487 4.48647 4.57412 4.68076 4.73372 4.82174 4.87647 4.90197 5.13198 5.16843 5.29358 5.30939 5.45776 5.51208 5.56904 5.59980 5.62235 5.77123 5.81724 5.85013 5.99020 6.05534 6.21309 6.36597 6.49511 6.66204 6.88163 6.93301 7.27566 7.32299 7.47375 7.79285 7.88350 8.11792 8.23072 8.28226 8.61357 9.23555 9.77027 11.26838 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.004543 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.940275 B = 6161.532990 C = 6983.093092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.083 3.917 3 H 0.074 0.926 4 C -0.097 4.097 5 C 0.029 3.971 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.276 1.276 14 N -0.665 5.665 15 C 0.138 3.862 16 C -0.013 4.013 17 C -0.005 4.005 18 N -0.494 5.494 19 C 0.174 3.826 20 N -0.455 5.455 21 C 0.137 3.863 22 C -0.177 4.177 23 C -0.179 4.179 24 C -0.168 4.168 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.007 0.993 31 H 0.033 0.967 32 H 0.258 0.742 33 H 0.337 0.663 34 H 0.025 0.975 35 H 0.095 0.905 36 H 0.171 0.829 37 H 0.200 0.800 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.130 -0.408 14.250 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.092 0.908 4 C -0.135 4.135 5 C -0.008 4.008 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.297 5.297 15 C 0.008 3.992 16 C -0.127 4.127 17 C -0.153 4.153 18 N -0.212 5.212 19 C -0.108 4.108 20 N -0.140 5.140 21 C 0.014 3.986 22 C -0.196 4.196 23 C -0.216 4.216 24 C -0.205 4.205 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.042 0.958 35 H 0.113 0.887 36 H 0.189 0.811 37 H 0.216 0.784 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.706 -0.488 14.561 21.423 hybrid contribution -1.265 -0.331 -1.128 1.727 sum -16.971 -0.819 13.434 21.660 Atomic orbital electron populations 1.22666 0.98864 1.01644 1.01160 1.21771 0.90756 0.98550 0.91555 0.90809 1.21619 1.00799 0.98199 0.92887 1.18995 0.88141 0.96528 0.97092 1.21332 0.91834 1.34183 1.08421 0.93218 1.24986 0.97145 0.95788 0.96431 1.69975 1.02154 1.44338 1.36777 0.86705 0.78169 0.79981 0.83755 1.20868 1.21322 1.20081 1.60585 1.57998 1.08832 1.02308 1.20288 0.98504 0.94369 0.86053 1.21189 0.92582 1.02779 0.96140 1.22141 0.95564 1.02405 0.95180 1.70289 1.20711 1.13893 1.16276 1.24839 0.85377 1.03630 0.96971 1.45344 1.07957 1.38419 1.22264 1.21362 0.78470 0.97939 1.00846 1.22689 0.96154 1.00666 1.00063 1.23315 1.03392 1.01934 0.92980 1.22965 0.94099 1.01139 1.02321 0.92119 0.92438 0.93959 0.93683 0.93485 0.97445 0.94814 0.93236 0.84354 0.95756 0.88673 0.81133 0.78356 0.88534 0.89492 0.86735 0.88308 0.87916 0.88259 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.26 37.16 0.31 -1.98 16 2 C 0.08 1.34 2.59 -67.71 -0.18 1.17 16 3 H 0.07 1.23 7.80 -51.93 -0.40 0.83 16 4 C -0.10 -1.99 4.83 -26.73 -0.13 -2.12 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 7 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 N -0.67 -10.63 5.69 -107.99 -0.61 -11.25 16 15 C 0.14 1.91 5.73 -4.98 -0.03 1.89 16 16 C -0.01 -0.19 6.47 -81.60 -0.53 -0.72 16 17 C 0.00 -0.08 11.79 -17.82 -0.21 -0.29 16 18 N -0.49 -7.99 11.25 -14.67 -0.17 -8.15 16 19 C 0.17 2.17 12.56 -90.37 -1.13 1.03 16 20 N -0.46 -5.33 2.75 -113.99 -0.31 -5.64 16 21 C 0.14 1.11 6.22 -4.04 -0.03 1.09 16 22 C -0.18 -1.50 5.51 -90.62 -0.50 -2.00 16 23 C -0.18 -1.53 7.23 -26.70 -0.19 -1.72 16 24 C -0.17 -1.13 10.25 -26.70 -0.27 -1.40 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 27 H 0.04 0.45 7.17 -51.93 -0.37 0.08 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.34 4.98 5.91 -39.29 -0.23 4.75 16 34 H 0.02 0.29 6.77 -51.93 -0.35 -0.06 16 35 H 0.10 1.37 8.06 -51.93 -0.42 0.95 16 36 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 37 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.10 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.09 0.67 7.19 -51.93 -0.37 0.30 16 40 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 41 H 0.10 0.82 6.44 -51.93 -0.33 0.49 16 42 H 0.10 0.99 8.00 -51.93 -0.42 0.57 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -33.56 353.52 -10.89 -44.46 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.41 Total: 3.20 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.44 Total: -18.26 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.36 Total: -52.02 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.56 -10.89 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.947 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds