Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47283 * 2 1 4 4 C 1.53002 * 109.46986 * 239.99810 * 2 1 3 5 5 C 1.53003 * 109.46889 * 174.99739 * 4 2 1 6 6 C 1.50701 * 109.47112 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99929 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00323 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99783 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00225 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47316 * 89.99538 * 10 8 6 12 12 H 1.48501 * 109.47148 * 209.99555 * 10 8 6 13 13 H 1.48505 * 109.47013 * 329.99524 * 10 8 6 14 14 N 1.46901 * 109.47417 * 120.00263 * 2 1 3 15 15 C 1.46896 * 110.99809 * 275.00231 * 14 2 1 16 16 C 1.50705 * 109.47214 * 179.97438 * 15 14 2 17 17 C 1.34666 * 126.59579 * 94.97199 * 16 15 14 18 18 N 1.34121 * 108.02399 * 180.02562 * 17 16 15 19 19 C 1.30504 * 109.25569 * 359.97438 * 18 17 16 20 20 N 1.35039 * 108.70033 * 0.02562 * 19 18 17 21 21 C 1.46494 * 126.39794 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47247 * 265.02399 * 21 20 19 23 23 C 1.52998 * 117.50125 * 243.74578 * 22 21 20 24 24 C 1.53000 * 117.50271 * 175.08613 * 22 21 20 25 25 H 1.08996 * 109.47166 * 59.99721 * 1 2 3 26 26 H 1.09004 * 109.47283 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47134 * 299.99856 * 1 2 3 28 28 H 1.08992 * 109.47502 * 294.99966 * 4 2 1 29 29 H 1.09004 * 109.46742 * 55.00675 * 4 2 1 30 30 H 1.08998 * 109.47657 * 300.00299 * 5 4 2 31 31 H 1.09005 * 109.47183 * 60.00805 * 5 4 2 32 32 H 0.97003 * 120.00009 * 179.97438 * 9 8 6 33 33 H 1.00908 * 110.99671 * 38.95075 * 14 2 1 34 34 H 1.09001 * 109.47597 * 59.99834 * 15 14 2 35 35 H 1.09001 * 109.47080 * 299.99667 * 15 14 2 36 36 H 1.08001 * 125.98583 * 0.05687 * 17 16 15 37 37 H 1.08002 * 125.64666 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47118 * 25.02465 * 21 20 19 39 39 H 1.09006 * 109.47356 * 145.02553 * 21 20 19 40 40 H 1.09010 * 115.54889 * 29.41660 * 22 21 20 41 41 H 1.08997 * 117.49819 * 0.02562 * 23 22 21 42 42 H 1.08999 * 117.50142 * 145.01808 * 23 22 21 43 43 H 1.08998 * 117.50345 * 214.98521 * 24 22 21 44 44 H 1.09008 * 117.49604 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3232 -2.5445 7 1 3.3685 -1.8030 -3.2140 8 6 5.4183 -1.3601 -2.8159 9 7 6.2689 -0.7754 -2.0009 10 14 6.0409 -2.2395 -4.3419 11 1 6.0914 -1.2843 -5.4777 12 1 7.4020 -2.7745 -4.0842 13 1 5.1242 -3.3588 -4.6767 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3468 16 6 2.5874 -0.5219 3.5560 17 6 3.8613 -0.5804 3.9886 18 7 3.8904 -1.3424 5.0919 19 6 2.6826 -1.7581 5.3598 20 7 1.8392 -1.2689 4.4255 21 6 0.3936 -1.4955 4.3555 22 6 0.1062 -2.6694 3.4173 23 6 -0.6900 -2.3776 2.1438 24 6 -1.3447 -3.1400 3.2984 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 3.8532 0.4369 -1.3574 31 1 3.9995 -1.0729 -0.4260 32 1 7.2196 -0.8017 -2.1916 33 1 1.4495 -1.4980 1.4100 34 1 1.0871 0.6162 2.5526 35 1 2.7588 1.0461 2.1182 36 1 4.7107 -0.0977 3.5282 37 1 2.4039 -2.3888 6.1911 38 1 0.0130 -1.7243 5.3509 39 1 -0.0968 -0.5989 3.9762 40 1 0.8875 -3.4274 3.3597 41 1 -1.0088 -1.3491 1.9742 42 1 -0.4329 -2.9437 1.2486 43 1 -1.5181 -4.2075 3.1623 44 1 -2.0946 -2.6135 3.8889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172493416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = 53.054459 kcal Electronic energy + Delta-G solvation = -22010.934368 eV Core-core repulsion = 18963.742486 eV Total energy + Delta-G solvation = -3047.191882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.04318 -38.87503 -38.23826 -35.39522 -34.46737 -33.53678 -31.29578 -29.59781 -28.05986 -27.05016 -25.63957 -23.65164 -22.94297 -22.42346 -22.07213 -21.36276 -20.58036 -18.39946 -18.18929 -16.84637 -16.53414 -16.39683 -16.18131 -15.99833 -15.44928 -14.89473 -14.73154 -14.49317 -14.30799 -14.08667 -13.99382 -13.71979 -13.40457 -13.24151 -13.00333 -12.85080 -12.75211 -12.52383 -12.39036 -12.26602 -11.84346 -11.54939 -11.39565 -11.21031 -11.06131 -10.95538 -10.85625 -10.48491 -10.46596 -9.38435 -9.07187 -8.12434 -6.23071 1.05243 1.39030 1.41134 1.51705 1.85748 2.21455 2.43925 2.80185 3.19802 3.37095 3.64549 3.76910 3.83585 3.91600 3.98294 4.03290 4.10526 4.18120 4.29460 4.34069 4.44348 4.48982 4.58888 4.69515 4.77273 4.79211 4.92510 4.98885 5.00434 5.03480 5.11785 5.17482 5.23817 5.30363 5.42037 5.47932 5.59974 5.78004 5.90180 6.04760 6.23493 6.35633 6.37851 6.62230 6.97519 7.15367 7.45061 8.98738 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.004543 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.940275 B = 6161.532990 C = 6983.093092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.064 0.936 4 C -0.087 4.087 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.055 0.945 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.264 1.264 14 N -0.689 5.689 15 C 0.145 3.855 16 C -0.013 4.013 17 C -0.044 4.044 18 N -0.537 5.537 19 C 0.186 3.814 20 N -0.448 5.448 21 C 0.133 3.867 22 C -0.185 4.185 23 C -0.193 4.193 24 C -0.142 4.142 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.052 0.948 30 H -0.022 1.022 31 H 0.000 1.000 32 H 0.260 0.740 33 H 0.344 0.656 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.152 0.848 37 H 0.242 0.758 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.175 -1.170 14.618 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.002 3.998 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.188 1.188 14 N -0.323 5.323 15 C 0.015 3.985 16 C -0.128 4.128 17 C -0.191 4.191 18 N -0.256 5.256 19 C -0.096 4.096 20 N -0.131 5.131 21 C 0.012 3.988 22 C -0.204 4.204 23 C -0.230 4.230 24 C -0.180 4.180 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.071 0.929 30 H -0.003 1.003 31 H 0.018 0.982 32 H 0.069 0.931 33 H 0.164 0.836 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.169 0.831 37 H 0.258 0.742 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.792 -1.251 14.923 24.030 hybrid contribution -0.309 -0.130 -1.201 1.247 sum -19.102 -1.381 13.722 23.560 Atomic orbital electron populations 1.22513 0.95095 1.02741 1.02721 1.21549 0.93606 0.97099 0.89696 0.91720 1.21447 0.96459 0.98844 0.95755 1.18815 0.92310 0.93887 0.94828 1.21818 0.92467 1.34412 1.09367 0.92660 1.25954 0.97453 0.96543 0.99947 1.70130 1.02514 1.45721 1.38936 0.85534 0.77524 0.79011 0.79479 1.19650 1.21008 1.18845 1.60423 1.59006 1.09800 1.03039 1.20191 0.99664 0.93513 0.85108 1.21120 0.92273 1.02957 0.96445 1.22100 0.96321 1.04158 0.96550 1.70210 1.23236 1.15274 1.16857 1.25614 0.84420 1.02336 0.97278 1.45502 1.09408 1.37109 1.21048 1.21719 0.76003 0.98234 1.02805 1.22565 0.96797 1.00523 1.00513 1.23314 1.04441 1.02458 0.92778 1.23048 0.92987 1.01383 1.00555 0.91491 0.91574 0.91459 0.93898 0.92898 1.00338 0.98180 0.93116 0.83563 0.92694 0.90158 0.83088 0.74249 0.85134 0.88351 0.89175 0.87629 0.89611 0.88000 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 8.26 71.98 0.59 -3.22 16 2 C 0.09 2.87 2.59 44.91 0.12 2.99 16 3 H 0.06 2.18 7.80 -2.38 -0.02 2.16 16 4 C -0.09 -3.60 4.83 30.60 0.15 -3.45 16 5 C 0.04 2.14 4.86 29.85 0.15 2.28 16 6 C -0.54 -32.32 9.11 25.60 0.23 -32.09 16 7 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 8 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 9 N -0.93 -59.75 13.29 21.45 0.28 -59.46 16 10 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 14 N -0.69 -22.18 5.69 -495.57 -2.82 -25.00 16 15 C 0.14 4.00 5.73 85.56 0.49 4.49 16 16 C -0.01 -0.37 6.47 40.95 0.26 -0.10 16 17 C -0.04 -1.52 11.79 83.52 0.98 -0.53 16 18 N -0.54 -17.79 11.25 -200.32 -2.25 -20.04 16 19 C 0.19 4.38 12.56 180.26 2.26 6.64 16 20 N -0.45 -9.75 2.75 -514.55 -1.42 -11.16 16 21 C 0.13 1.71 6.22 86.38 0.54 2.25 16 22 C -0.18 -2.70 5.51 -10.79 -0.06 -2.76 16 23 C -0.19 -2.82 7.23 30.62 0.22 -2.60 16 24 C -0.14 -1.42 10.25 30.62 0.31 -1.10 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.37 6.43 -2.38 -0.02 1.35 16 27 H 0.07 1.18 7.17 -2.38 -0.02 1.17 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 30 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 31 H 0.00 -0.01 7.75 -2.38 -0.02 -0.03 16 32 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.34 10.00 5.91 -89.69 -0.53 9.47 16 34 H 0.06 1.18 6.77 -2.39 -0.02 1.16 16 35 H 0.08 2.43 8.06 -2.39 -0.02 2.41 16 36 H 0.15 5.56 8.06 -2.91 -0.02 5.54 16 37 H 0.24 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.13 0.84 8.13 -2.39 -0.02 0.82 16 39 H 0.10 1.10 7.19 -2.38 -0.02 1.08 16 40 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.11 1.39 6.44 -2.39 -0.02 1.38 16 42 H 0.09 1.55 8.00 -2.39 -0.02 1.53 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -76.56 353.52 2.98 -73.58 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.44 Total: 20.66 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 6.72 Total: -26.84 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -6.20 Total: -115.66 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -76.56 2.98 -73.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.635 kcal (2) G-P(sol) polarization free energy of solvation -76.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds