Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47188 * 2 1 4 4 C 1.52999 * 109.47107 * 120.00015 * 2 1 3 5 5 C 1.52999 * 109.47165 * 185.16350 * 4 2 1 6 6 C 1.50699 * 109.47154 * 184.20812 * 5 4 2 7 7 H 1.07998 * 120.00123 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00047 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00308 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99963 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47068 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47172 * 119.99866 * 10 8 6 13 13 H 1.48508 * 109.46715 * 240.00091 * 10 8 6 14 14 N 1.46896 * 109.47484 * 240.00088 * 2 1 3 15 15 C 1.46898 * 111.00224 * 86.62155 * 14 2 1 16 16 C 1.50701 * 109.47492 * 181.25322 * 15 14 2 17 17 C 1.34673 * 126.59123 * 264.86426 * 16 15 14 18 18 N 1.34126 * 108.02198 * 179.97438 * 17 16 15 19 19 C 1.30502 * 109.25313 * 359.97438 * 18 17 16 20 20 N 1.35042 * 108.70260 * 359.97438 * 19 18 17 21 21 C 1.46499 * 126.39567 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.46991 * 265.79299 * 21 20 19 23 23 C 1.53003 * 117.49894 * 243.72698 * 22 21 20 24 24 C 1.53003 * 117.49766 * 175.06919 * 22 21 20 25 25 H 1.08991 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46993 * 300.00471 * 1 2 3 27 27 H 1.09003 * 109.46564 * 59.99989 * 1 2 3 28 28 H 1.09000 * 109.47317 * 305.15883 * 4 2 1 29 29 H 1.09000 * 109.47245 * 65.15920 * 4 2 1 30 30 H 1.09001 * 109.46850 * 304.20150 * 5 4 2 31 31 H 1.08995 * 109.47398 * 64.20511 * 5 4 2 32 32 H 0.96998 * 120.00651 * 179.97438 * 9 8 6 33 33 H 1.00901 * 110.99970 * 322.67225 * 14 2 1 34 34 H 1.08995 * 109.47409 * 61.25214 * 15 14 2 35 35 H 1.09011 * 109.47225 * 301.25290 * 15 14 2 36 36 H 1.08001 * 125.98612 * 0.02562 * 17 16 15 37 37 H 1.08002 * 125.64655 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.47521 * 25.79120 * 21 20 19 39 39 H 1.09005 * 109.47256 * 145.79599 * 21 20 19 40 40 H 1.08999 * 115.55436 * 29.40449 * 22 21 20 41 41 H 1.08999 * 117.49787 * 0.02562 * 23 22 21 42 42 H 1.08999 * 117.49373 * 145.02420 * 23 22 21 43 43 H 1.08996 * 117.50176 * 214.98164 * 24 22 21 44 44 H 1.09001 * 117.49765 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5645 -0.6098 1.3158 6 6 4.0756 -1.4066 2.4884 7 1 3.3825 -1.9388 3.1229 8 6 5.4282 -1.4560 2.7512 9 7 6.2724 -0.8083 1.9783 10 14 6.0618 -2.4431 4.2051 11 1 4.9178 -3.0732 4.9118 12 1 6.9874 -3.4986 3.7212 13 1 6.7837 -1.5414 5.1386 14 7 2.0197 -0.6924 -1.1994 15 6 2.1191 0.2315 -2.3371 16 6 2.5942 -0.5194 -3.5542 17 6 3.8646 -0.6213 -3.9894 18 7 3.8637 -1.3731 -5.1002 19 6 2.6410 -1.7415 -5.3695 20 7 1.8178 -1.2308 -4.4287 21 6 0.3649 -1.4049 -4.3578 22 6 -0.3243 -0.2243 -5.0451 23 6 -1.1995 0.6843 -4.1794 24 6 -1.8475 -0.2763 -5.1796 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.6032 -0.2636 2.1368 29 1 1.7541 -1.7721 1.2042 30 1 3.9978 -1.0000 0.3949 31 1 3.8475 0.4359 1.4361 32 1 7.2240 -0.8428 2.1633 33 1 1.4341 -1.4824 -1.4253 34 1 2.8279 1.0249 -2.1001 35 1 1.1402 0.6670 -2.5381 36 1 4.7321 -0.1763 -3.5249 37 1 2.3379 -2.3540 -6.2058 38 1 0.0849 -2.3312 -4.8595 39 1 0.0547 -1.4490 -3.3138 40 1 0.2368 0.2408 -5.8555 41 1 -1.2839 0.4413 -3.1202 42 1 -1.2143 1.7472 -4.4206 43 1 -2.2884 0.1550 -6.0783 44 1 -2.3586 -1.1517 -4.7789 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = 71.934547 kcal Electronic energy + Delta-G solvation = -21641.004948 eV Core-core repulsion = 18594.631768 eV Total energy + Delta-G solvation = -3046.373180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.00981 -37.97797 -37.24011 -33.65565 -33.25664 -31.99715 -29.62157 -28.40219 -27.30276 -25.23615 -24.31381 -22.87039 -21.68080 -21.27963 -21.15711 -20.12461 -19.49517 -17.31136 -16.08764 -15.95041 -15.58710 -15.15727 -14.83000 -14.54443 -14.28971 -14.05989 -13.63318 -13.37530 -13.02356 -12.83485 -12.55645 -12.33695 -12.19498 -12.10591 -11.97079 -11.74180 -11.36998 -11.16838 -10.94964 -10.83733 -10.52373 -10.40266 -10.24915 -9.78548 -9.62595 -9.49813 -9.19128 -8.86424 -8.27427 -8.17844 -7.87661 -5.84343 -3.85335 2.10155 2.69421 3.30503 3.36116 3.39211 3.46456 3.50101 4.19372 4.33034 4.45142 4.53936 4.57574 4.70342 4.80625 4.85339 4.88738 5.08796 5.16952 5.20192 5.29388 5.42031 5.46978 5.51169 5.57607 5.59450 5.65035 5.71529 5.85607 5.98494 6.04701 6.18968 6.35763 6.49564 6.64712 6.87728 6.93565 7.27093 7.31582 7.44814 7.71487 7.88371 8.11392 8.23149 8.27995 8.61416 9.23691 9.77095 11.26735 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020344 B = 0.004003 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.016174 B = 6993.694021 C = 7983.237092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.074 0.926 4 C -0.097 4.097 5 C 0.027 3.973 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.663 5.663 15 C 0.137 3.863 16 C -0.012 4.012 17 C -0.005 4.005 18 N -0.494 5.494 19 C 0.174 3.826 20 N -0.455 5.455 21 C 0.137 3.863 22 C -0.174 4.174 23 C -0.174 4.174 24 C -0.170 4.170 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.006 0.994 32 H 0.257 0.743 33 H 0.330 0.670 34 H 0.095 0.905 35 H 0.031 0.969 36 H 0.171 0.829 37 H 0.199 0.801 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.508 2.090 -15.541 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.092 0.908 4 C -0.135 4.135 5 C -0.010 4.010 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.293 5.293 15 C 0.007 3.993 16 C -0.125 4.125 17 C -0.153 4.153 18 N -0.212 5.212 19 C -0.108 4.108 20 N -0.139 5.139 21 C 0.014 3.986 22 C -0.193 4.193 23 C -0.211 4.211 24 C -0.207 4.207 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.148 0.852 34 H 0.113 0.887 35 H 0.049 0.951 36 H 0.188 0.812 37 H 0.216 0.784 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.092 1.968 -15.825 22.655 hybrid contribution -1.257 -0.274 1.004 1.632 sum -17.349 1.694 -14.821 22.880 Atomic orbital electron populations 1.22552 0.98693 1.01400 1.01278 1.21763 0.90786 0.98476 0.91526 0.90797 1.21623 1.00755 0.98339 0.92807 1.19019 0.88186 0.96330 0.97423 1.21360 0.91849 1.30102 1.12298 0.93158 1.24993 0.97184 0.95830 0.96414 1.69979 1.02279 1.42807 1.38213 0.86645 0.78850 0.80103 0.83012 1.19943 1.21121 1.21198 1.60567 1.56631 1.09379 1.02742 1.20325 0.99299 0.93968 0.85738 1.21172 0.91957 1.03363 0.96041 1.22148 0.95833 1.02288 0.95057 1.70292 1.20023 1.14734 1.16144 1.24832 0.85643 1.03676 0.96641 1.45324 1.07281 1.39429 1.21908 1.21357 0.77148 0.98015 1.02068 1.22654 0.93403 1.00131 1.03106 1.23102 1.03411 0.97378 0.97211 1.22981 0.93686 1.02248 1.01812 0.92900 0.92038 0.93910 0.93588 0.93511 0.94624 0.97525 0.93295 0.85244 0.88723 0.95131 0.81162 0.78388 0.88480 0.89418 0.87108 0.88479 0.88479 0.88361 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.16 37.16 0.34 -1.88 16 2 C 0.08 1.34 2.59 -67.72 -0.18 1.16 16 3 H 0.07 1.22 7.79 -51.93 -0.40 0.82 16 4 C -0.10 -1.98 4.83 -26.73 -0.13 -2.11 16 5 C 0.03 0.72 4.91 -27.88 -0.14 0.59 16 6 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 10 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 N -0.66 -10.41 5.64 -107.99 -0.61 -11.02 16 15 C 0.14 1.87 5.62 -4.98 -0.03 1.84 16 16 C -0.01 -0.17 6.45 -81.60 -0.53 -0.69 16 17 C -0.01 -0.08 11.79 -17.81 -0.21 -0.29 16 18 N -0.49 -7.98 11.25 -14.66 -0.16 -8.14 16 19 C 0.17 2.16 12.56 -90.37 -1.13 1.02 16 20 N -0.45 -5.26 2.75 -113.99 -0.31 -5.57 16 21 C 0.14 1.10 6.17 -4.04 -0.02 1.08 16 22 C -0.17 -1.26 6.01 -90.62 -0.54 -1.81 16 23 C -0.17 -1.21 10.00 -26.69 -0.27 -1.48 16 24 C -0.17 -0.97 10.25 -26.69 -0.27 -1.25 16 25 H 0.05 0.63 8.13 -51.93 -0.42 0.20 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.45 7.54 -51.93 -0.39 0.06 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.04 1.02 7.65 -51.93 -0.40 0.62 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.33 4.81 8.19 -39.29 -0.32 4.49 16 34 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 35 H 0.03 0.36 7.28 -51.92 -0.38 -0.02 16 36 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 37 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.10 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.09 0.72 7.50 -51.93 -0.39 0.33 16 40 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 0.70 8.03 -51.93 -0.42 0.28 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -33.50 364.33 -11.14 -44.64 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.73 Total: 1.92 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -3.52 Total: -17.66 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.35 Total: -51.71 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.50 -11.14 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.576 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds