Wall clock time and date at job start Mon Mar 30 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46954 * 2 1 4 4 C 1.53004 * 109.47302 * 239.99769 * 2 1 3 5 5 C 1.53002 * 109.46711 * 64.99783 * 4 2 1 6 6 C 1.50701 * 109.46901 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99979 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00078 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99960 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00140 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46768 * 60.00138 * 10 8 6 12 12 H 1.48494 * 109.47002 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46954 * 300.00411 * 10 8 6 14 14 N 1.46498 * 109.47029 * 119.99688 * 2 1 3 15 15 C 1.35044 * 126.39523 * 60.00530 * 14 2 1 16 16 N 1.30501 * 108.69892 * 179.97438 * 15 14 2 17 17 C 1.34134 * 109.25535 * 359.97438 * 16 15 14 18 18 C 1.34668 * 108.01972 * 0.02562 * 17 16 15 19 19 C 1.50694 * 126.58896 * 180.02562 * 18 17 16 20 20 C 1.53120 * 109.52137 * 84.84923 * 19 18 17 21 21 C 1.53051 * 109.27531 * 182.50348 * 20 19 18 22 22 N 1.46847 * 109.57529 * 59.08376 * 21 20 19 23 23 C 1.46839 * 111.19637 * 298.28797 * 22 21 20 24 24 C 1.53046 * 109.52385 * 61.74452 * 23 22 21 25 25 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47063 * 299.99926 * 1 2 3 27 27 H 1.08996 * 109.47019 * 60.00373 * 1 2 3 28 28 H 1.08996 * 109.46901 * 184.99914 * 4 2 1 29 29 H 1.08994 * 109.47106 * 304.99887 * 4 2 1 30 30 H 1.08996 * 109.47545 * 299.99737 * 5 4 2 31 31 H 1.09003 * 109.47090 * 60.00173 * 5 4 2 32 32 H 0.97005 * 120.00080 * 180.02562 * 9 8 6 33 33 H 1.07996 * 125.65229 * 359.97438 * 15 14 2 34 34 H 1.08001 * 125.98356 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.52335 * 204.97440 * 19 18 17 36 36 H 1.09001 * 109.50665 * 302.38070 * 20 19 18 37 37 H 1.09003 * 109.50426 * 62.49977 * 20 19 18 38 38 H 1.09001 * 109.40706 * 299.06338 * 21 20 19 39 39 H 1.08999 * 109.46136 * 179.13009 * 21 20 19 40 40 H 1.00896 * 110.99900 * 174.19431 * 22 21 20 41 41 H 1.08995 * 109.46979 * 301.72622 * 23 22 21 42 42 H 1.09001 * 109.46273 * 181.75187 * 23 22 21 43 43 H 1.08995 * 109.50651 * 180.87429 * 24 23 22 44 44 H 1.09003 * 109.49973 * 60.75977 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6352 0.0689 -2.4953 6 6 2.1381 -0.6412 -3.7257 7 1 2.6908 -1.5640 -3.6287 8 6 1.8927 -0.1128 -4.9754 9 7 1.2201 1.0111 -5.0935 10 14 2.5167 -0.9926 -6.5005 11 1 1.9251 -2.3533 -6.5638 12 1 2.1247 -0.2252 -7.7098 13 1 3.9967 -1.0986 -6.4401 14 7 2.0183 -0.6905 1.1962 15 6 1.7731 -1.9741 1.5367 16 7 2.3749 -2.2297 2.6661 17 6 3.0198 -1.1298 3.0825 18 6 2.8091 -0.1555 2.1770 19 6 3.3424 1.2529 2.2324 20 6 4.7552 1.2886 1.6433 21 6 5.3153 2.7082 1.7593 22 7 5.3424 3.1126 3.1707 23 6 3.9905 3.1318 3.7435 24 6 3.3915 1.7246 3.6883 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 0.5490 0.1470 -2.5390 31 1 2.0698 1.0675 -2.4494 32 1 1.0471 1.3827 -5.9727 33 1 1.1775 -2.6733 0.9685 34 1 3.6047 -1.0410 3.9860 35 1 2.6914 1.9118 1.6578 36 1 5.3963 0.5994 2.1930 37 1 4.7196 0.9950 0.5941 38 1 4.6821 3.3944 1.1969 39 1 6.3271 2.7336 1.3547 40 1 5.7949 4.0075 3.2818 41 1 3.3635 3.8161 3.1720 42 1 4.0401 3.4649 4.7803 43 1 2.3822 1.7422 4.0993 44 1 4.0105 1.0425 4.2712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:48 Heat of formation + Delta-G solvation = 31.956422 kcal Electronic energy + Delta-G solvation = -22058.781339 eV Core-core repulsion = 19010.674577 eV Total energy + Delta-G solvation = -3048.106762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.96634 -38.55460 -36.26390 -33.32049 -33.08796 -31.07267 -30.87118 -28.84518 -28.15895 -25.48351 -24.01806 -23.20489 -22.97861 -21.52032 -20.45454 -19.37038 -18.95280 -17.13671 -16.64116 -16.00504 -15.03643 -14.95163 -14.73142 -14.53750 -14.24202 -14.10931 -13.53605 -13.36490 -13.31905 -13.10034 -12.87649 -12.33882 -12.26057 -12.23057 -11.54228 -11.49308 -11.28416 -11.10489 -10.92111 -10.70673 -10.68997 -10.65837 -10.56904 -9.95704 -9.74229 -9.61733 -9.36384 -9.00064 -8.65072 -8.45718 -8.03700 -6.11774 -4.14687 2.33877 3.09163 3.26974 3.31669 3.34534 3.44612 4.03945 4.36944 4.54626 4.69126 4.83342 4.92801 5.01703 5.09278 5.16454 5.24414 5.26484 5.29151 5.39311 5.46028 5.51794 5.54906 5.69121 5.70837 5.83183 5.84832 5.92833 5.99233 6.01275 6.14677 6.25765 6.28411 6.36395 6.48095 6.75243 6.83499 6.83937 7.03989 7.17368 7.48601 7.54166 7.60001 7.85634 8.27328 8.37889 8.90963 9.50332 10.99305 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.004437 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.168373 B = 6308.922984 C = 7181.544705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.093 0.907 4 C -0.116 4.116 5 C 0.026 3.974 6 C -0.524 4.524 7 H 0.055 0.945 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 N -0.439 5.439 15 C 0.183 3.817 16 N -0.503 5.503 17 C -0.032 4.032 18 C -0.019 4.019 19 C -0.010 4.010 20 C -0.108 4.108 21 C 0.057 3.943 22 N -0.690 5.690 23 C 0.058 3.942 24 C -0.103 4.103 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.023 0.977 31 H 0.016 0.984 32 H 0.262 0.738 33 H 0.198 0.802 34 H 0.161 0.839 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.341 0.659 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 4.414 15.781 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.111 0.889 4 C -0.154 4.154 5 C -0.011 4.011 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.202 1.202 14 N -0.120 5.120 15 C -0.099 4.099 16 N -0.221 5.221 17 C -0.180 4.180 18 C -0.135 4.135 19 C -0.030 4.030 20 C -0.146 4.146 21 C -0.072 4.072 22 N -0.322 5.322 23 C -0.072 4.072 24 C -0.142 4.142 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.215 0.785 34 H 0.178 0.822 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.159 0.841 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.242 3.218 16.138 16.772 hybrid contribution -0.093 1.110 -1.898 2.201 sum 3.149 4.327 14.240 15.213 Atomic orbital electron populations 1.22170 0.93458 1.03028 1.02938 1.21812 0.95413 0.97277 0.83208 0.88896 1.22049 1.00357 0.99676 0.93317 1.19108 0.97077 0.94993 0.89919 1.21136 1.35489 1.08591 0.90976 0.92695 1.24990 0.95087 0.94950 0.99160 1.69937 1.40151 1.19360 1.23925 0.86645 0.79365 0.79740 0.82228 1.20140 1.21203 1.20192 1.45810 1.36756 1.11201 1.18236 1.24704 1.04049 0.85528 0.95640 1.70260 1.12866 1.28029 1.10963 1.21893 1.05563 0.89346 1.01239 1.21087 1.02188 0.97413 0.92830 1.19555 0.96234 0.89825 0.97349 1.21646 0.95011 0.96599 1.01359 1.21943 1.00871 0.96214 0.88144 1.60289 1.19235 1.35251 1.17392 1.21931 0.89047 0.96697 0.99500 1.21580 1.00897 0.96252 0.95447 0.91962 0.92971 0.89322 0.92591 0.92348 0.95862 0.96546 0.92823 0.78536 0.82156 0.91095 0.90673 0.91194 0.95019 0.90510 0.84137 0.95219 0.90650 0.91374 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.00 37.16 0.33 -1.96 16 2 C 0.12 1.97 3.02 -67.93 -0.21 1.77 16 3 H 0.09 1.47 6.72 -51.93 -0.35 1.12 16 4 C -0.12 -2.21 4.62 -26.73 -0.12 -2.33 16 5 C 0.03 0.63 4.73 -27.88 -0.13 0.50 16 6 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 10 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 N -0.44 -6.78 2.62 -106.92 -0.28 -7.06 16 15 C 0.18 2.89 11.65 -90.37 -1.05 1.84 16 16 N -0.50 -8.52 11.25 -14.66 -0.16 -8.69 16 17 C -0.03 -0.48 11.06 -17.81 -0.20 -0.68 16 18 C -0.02 -0.28 5.88 -81.61 -0.48 -0.76 16 19 C -0.01 -0.12 2.38 -91.65 -0.22 -0.34 16 20 C -0.11 -1.31 5.36 -26.64 -0.14 -1.46 16 21 C 0.06 0.60 6.55 -3.83 -0.03 0.57 16 22 N -0.69 -6.48 6.85 -113.81 -0.78 -7.26 16 23 C 0.06 0.52 6.55 -3.83 -0.03 0.49 16 24 C -0.10 -1.06 5.02 -26.65 -0.13 -1.19 16 25 H 0.06 0.86 7.95 -51.93 -0.41 0.45 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.38 6.56 -51.93 -0.34 1.04 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.02 0.57 6.56 -51.93 -0.34 0.23 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 33 H 0.20 2.67 8.06 -52.49 -0.42 2.25 16 34 H 0.16 2.10 7.34 -52.49 -0.39 1.72 16 35 H 0.07 0.91 7.01 -51.93 -0.36 0.54 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.34 2.56 8.90 -39.29 -0.35 2.21 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.81 7.20 -51.93 -0.37 0.43 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -29.92 347.09 -10.62 -40.54 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.53 Total: 2.68 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -2.81 Total: -16.47 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.49 Total: -48.04 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.92 -10.62 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.493 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds