Wall clock time and date at job start Mon Mar 30 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47808 * 2 1 4 4 C 1.53004 * 109.47116 * 120.00016 * 2 1 3 5 5 C 1.53001 * 109.47082 * 184.22040 * 4 2 1 6 6 C 1.50701 * 109.47031 * 177.81816 * 5 4 2 7 7 H 1.08008 * 119.99694 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99951 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00109 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99869 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47357 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47572 * 120.00226 * 10 8 6 13 13 H 1.48505 * 109.46833 * 239.99872 * 10 8 6 14 14 N 1.46905 * 109.47140 * 239.99520 * 2 1 3 15 15 C 1.46845 * 110.99575 * 72.97398 * 14 2 1 16 16 C 1.53041 * 109.52539 * 174.16002 * 15 14 2 17 17 C 1.53119 * 109.27610 * 59.18086 * 16 15 14 18 18 N 1.46497 * 109.52666 * 182.44323 * 17 16 15 19 19 C 1.34949 * 126.03242 * 34.68168 * 18 17 16 20 20 C 1.35317 * 107.74274 * 179.97438 * 19 18 17 21 21 C 1.39868 * 107.92063 * 0.02562 * 20 19 18 22 22 N 1.30836 * 108.20313 * 359.73824 * 21 20 19 23 23 C 1.53119 * 109.15978 * 302.34825 * 17 16 15 24 24 C 1.46845 * 111.00058 * 308.77066 * 14 2 1 25 25 H 1.08996 * 109.47808 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47522 * 300.00464 * 1 2 3 27 27 H 1.09007 * 109.47190 * 59.99911 * 1 2 3 28 28 H 1.09000 * 109.46951 * 64.22382 * 4 2 1 29 29 H 1.08997 * 109.46822 * 304.22325 * 4 2 1 30 30 H 1.09005 * 109.47059 * 297.81923 * 5 4 2 31 31 H 1.08995 * 109.47402 * 57.82078 * 5 4 2 32 32 H 0.97002 * 119.99748 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46727 * 294.17967 * 15 14 2 34 34 H 1.09000 * 109.46277 * 54.14748 * 15 14 2 35 35 H 1.09002 * 109.50030 * 299.24272 * 16 15 14 36 36 H 1.08998 * 109.53897 * 179.14299 * 16 15 14 37 37 H 1.09002 * 109.57357 * 62.28217 * 17 16 15 38 38 H 1.07991 * 126.13266 * 359.95812 * 19 18 17 39 39 H 1.08001 * 126.04051 * 179.97438 * 20 19 18 40 40 H 1.08005 * 125.89804 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.50512 * 297.70941 * 23 17 16 42 42 H 1.09000 * 109.53973 * 177.61274 * 23 17 16 43 43 H 1.09000 * 109.45784 * 305.84828 * 24 14 2 44 44 H 1.08995 * 109.46747 * 65.82740 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5662 -0.6300 1.3035 6 6 4.0648 -1.2938 2.5612 7 1 3.3632 -1.7369 3.2525 8 6 5.4167 -1.3364 2.8288 9 7 6.2710 -0.7973 1.9868 10 14 6.0347 -2.1599 4.3874 11 1 4.8807 -2.6839 5.1615 12 1 6.9410 -3.2804 4.0294 13 1 6.7736 -1.1694 5.2110 14 7 2.0196 -0.6926 -1.1994 15 6 1.8165 0.1276 -2.4004 16 6 2.4666 -0.5583 -3.6042 17 6 1.8401 -1.9422 -3.7966 18 7 2.4987 -2.6271 -4.9116 19 6 3.8027 -2.5288 -5.2447 20 6 4.0119 -3.3126 -6.3277 21 6 2.7939 -3.9098 -6.6685 22 7 1.8872 -3.5037 -5.8171 23 6 2.0229 -2.7592 -2.5145 24 6 1.3856 -2.0094 -1.3424 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.7397 -1.7685 1.2122 29 1 1.6161 -0.2530 2.1376 30 1 3.9914 -1.1323 0.4344 31 1 3.8679 0.4174 1.3014 32 1 7.2221 -0.8277 2.1749 33 1 0.7485 0.2462 -2.5830 34 1 2.2704 1.1075 -2.2520 35 1 3.5370 -0.6647 -3.4281 36 1 2.3028 0.0428 -4.4986 37 1 0.7769 -1.8350 -4.0118 38 1 4.5462 -1.9316 -4.7379 39 1 4.9529 -3.4518 -6.8392 40 1 2.6308 -4.5916 -7.4901 41 1 3.0863 -2.9003 -2.3214 42 1 1.5420 -3.7306 -2.6296 43 1 1.5266 -2.5817 -0.4255 44 1 0.3197 -1.8810 -1.5301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:29 Heat of formation + Delta-G solvation = 68.864904 kcal Electronic energy + Delta-G solvation = -22025.265862 eV Core-core repulsion = 18978.759572 eV Total energy + Delta-G solvation = -3046.506290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23785 -39.27940 -35.77569 -33.25035 -31.83120 -30.99697 -30.00669 -29.66745 -28.44401 -25.28227 -24.27260 -23.27492 -21.82018 -21.09823 -20.76713 -19.61998 -18.88851 -17.40837 -16.16969 -15.87019 -15.14781 -14.80399 -14.69924 -14.41957 -14.29495 -13.81097 -13.55176 -13.44578 -12.90312 -12.70155 -12.65864 -12.39233 -12.05817 -11.92976 -11.73465 -11.41637 -11.16438 -11.05469 -10.89627 -10.80150 -10.71949 -10.45478 -10.44520 -10.12256 -9.66094 -9.36214 -9.23799 -8.91481 -8.56226 -8.27136 -7.88057 -5.91898 -3.93160 1.94072 2.49022 2.86723 3.33985 3.41708 3.45370 4.08253 4.37051 4.51413 4.68883 4.86587 4.88940 4.95684 5.12341 5.25323 5.31567 5.35192 5.43964 5.44528 5.52673 5.60548 5.61028 5.66914 5.75884 5.77826 5.88683 5.98914 6.03354 6.04262 6.17826 6.21788 6.26363 6.35679 6.61621 6.67085 6.81407 7.06037 7.23918 7.41599 7.46791 7.74009 7.81782 8.03090 8.17870 8.53700 9.15924 9.69975 11.19049 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.004302 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.714613 B = 6507.619390 C = 7538.056596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.079 0.921 4 C -0.102 4.102 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.519 5.519 15 C 0.061 3.939 16 C -0.124 4.124 17 C 0.163 3.837 18 N -0.361 5.361 19 C 0.062 3.938 20 C -0.283 4.283 21 C 0.039 3.961 22 N -0.304 5.304 23 C -0.125 4.125 24 C 0.058 3.942 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.009 0.991 32 H 0.257 0.743 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.173 0.827 39 H 0.144 0.856 40 H 0.179 0.821 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -0.542 -14.481 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.097 0.903 4 C -0.139 4.139 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.242 5.242 15 C -0.068 4.068 16 C -0.163 4.163 17 C 0.061 3.939 18 N -0.143 5.143 19 C -0.085 4.085 20 C -0.312 4.312 21 C -0.147 4.147 22 N -0.125 5.125 23 C -0.164 4.164 24 C -0.070 4.070 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.191 0.809 39 H 0.162 0.838 40 H 0.196 0.804 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.735 -0.592 -13.994 17.057 hybrid contribution 0.546 -0.306 0.497 0.799 sum -9.188 -0.897 -13.497 16.353 Atomic orbital electron populations 1.22514 0.98717 1.01762 1.01395 1.21877 0.91154 0.98538 0.90976 0.90331 1.21714 1.00850 0.98239 0.93132 1.18985 0.87997 0.96780 0.96862 1.21381 0.91753 1.36225 1.06415 0.93090 1.24983 0.97134 0.95731 0.96474 1.69983 1.01956 1.45409 1.36010 0.86648 0.78837 0.79304 0.83854 1.19883 1.21124 1.21143 1.62077 1.57904 1.02454 1.01814 1.21992 0.98020 0.97249 0.89569 1.21987 1.02268 0.93583 0.98500 1.21426 0.97511 0.91660 0.83310 1.48946 1.06641 1.35009 1.23676 1.22593 0.87444 1.00744 0.97699 1.21486 0.99919 1.07200 1.02629 1.23821 0.91538 1.00434 0.98921 1.77312 1.22512 1.09263 1.03451 1.22037 1.03622 0.98277 0.92487 1.22070 0.95214 0.91105 0.98644 0.92508 0.92174 0.93540 0.93439 0.93215 0.95121 0.97264 0.93285 0.94989 0.89883 0.89642 0.90951 0.88722 0.80948 0.83785 0.80413 0.89931 0.91063 0.89105 0.94843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 8.40 37.15 0.31 -2.08 16 2 C 0.08 1.30 2.30 -67.71 -0.16 1.15 16 3 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.10 -2.00 4.58 -26.73 -0.12 -2.13 16 5 C 0.03 0.78 4.83 -27.88 -0.13 0.65 16 6 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 7 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 N -0.52 -7.79 4.04 -226.69 -0.92 -8.70 16 15 C 0.06 0.74 5.18 -3.83 -0.02 0.72 16 16 C -0.12 -1.41 5.07 -26.65 -0.13 -1.55 16 17 C 0.16 1.98 3.27 -67.81 -0.22 1.76 16 18 N -0.36 -4.77 3.53 -54.75 -0.19 -4.97 16 19 C 0.06 0.75 10.59 -17.22 -0.18 0.57 16 20 C -0.28 -3.21 10.80 -40.01 -0.43 -3.65 16 21 C 0.04 0.45 12.03 -17.37 -0.21 0.25 16 22 N -0.30 -4.31 12.58 30.63 0.39 -3.92 16 23 C -0.13 -1.67 5.70 -26.65 -0.15 -1.82 16 24 C 0.06 0.81 4.47 -3.83 -0.02 0.79 16 25 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.54 6.93 -51.92 -0.36 0.18 16 28 H 0.05 0.93 6.37 -51.93 -0.33 0.60 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.83 7.79 -51.93 -0.40 0.43 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.03 0.36 6.98 -51.93 -0.36 0.00 16 34 H 0.08 1.01 7.98 -51.93 -0.41 0.59 16 35 H 0.08 1.04 7.04 -51.93 -0.37 0.68 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.17 1.77 7.20 -52.49 -0.38 1.40 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.41 6.27 -51.93 -0.33 1.08 16 44 H 0.03 0.42 6.57 -51.93 -0.34 0.08 16 LS Contribution 342.74 15.07 5.17 5.17 Total: -1.00 -31.52 342.74 -9.10 -40.62 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.38 Total: 0.00 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.88 Total: -18.77 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.01 Total: -43.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.52 -9.10 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.488 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds