Wall clock time and date at job start Mon Mar 30 2020 02:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47808 * 2 1 4 4 C 1.53004 * 109.47116 * 120.00016 * 2 1 3 5 5 C 1.53001 * 109.47082 * 184.22040 * 4 2 1 6 6 C 1.50701 * 109.47031 * 177.81816 * 5 4 2 7 7 H 1.08008 * 119.99694 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99951 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00109 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99869 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47357 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47572 * 120.00226 * 10 8 6 13 13 H 1.48505 * 109.46833 * 239.99872 * 10 8 6 14 14 N 1.46905 * 109.47140 * 239.99520 * 2 1 3 15 15 C 1.46845 * 110.99575 * 72.97398 * 14 2 1 16 16 C 1.53041 * 109.52539 * 174.16002 * 15 14 2 17 17 C 1.53119 * 109.27610 * 59.18086 * 16 15 14 18 18 N 1.46497 * 109.52666 * 182.44323 * 17 16 15 19 19 C 1.34949 * 126.03242 * 34.68168 * 18 17 16 20 20 C 1.35317 * 107.74274 * 179.97438 * 19 18 17 21 21 C 1.39868 * 107.92063 * 0.02562 * 20 19 18 22 22 N 1.30836 * 108.20313 * 359.73824 * 21 20 19 23 23 C 1.53119 * 109.15978 * 302.34825 * 17 16 15 24 24 C 1.46845 * 111.00058 * 308.77066 * 14 2 1 25 25 H 1.08996 * 109.47808 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47522 * 300.00464 * 1 2 3 27 27 H 1.09007 * 109.47190 * 59.99911 * 1 2 3 28 28 H 1.09000 * 109.46951 * 64.22382 * 4 2 1 29 29 H 1.08997 * 109.46822 * 304.22325 * 4 2 1 30 30 H 1.09005 * 109.47059 * 297.81923 * 5 4 2 31 31 H 1.08995 * 109.47402 * 57.82078 * 5 4 2 32 32 H 0.97002 * 119.99748 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.46727 * 294.17967 * 15 14 2 34 34 H 1.09000 * 109.46277 * 54.14748 * 15 14 2 35 35 H 1.09002 * 109.50030 * 299.24272 * 16 15 14 36 36 H 1.08998 * 109.53897 * 179.14299 * 16 15 14 37 37 H 1.09002 * 109.57357 * 62.28217 * 17 16 15 38 38 H 1.07991 * 126.13266 * 359.95812 * 19 18 17 39 39 H 1.08001 * 126.04051 * 179.97438 * 20 19 18 40 40 H 1.08005 * 125.89804 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.50512 * 297.70941 * 23 17 16 42 42 H 1.09000 * 109.53973 * 177.61274 * 23 17 16 43 43 H 1.09000 * 109.45784 * 305.84828 * 24 14 2 44 44 H 1.08995 * 109.46747 * 65.82740 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5662 -0.6300 1.3035 6 6 4.0648 -1.2938 2.5612 7 1 3.3632 -1.7369 3.2525 8 6 5.4167 -1.3364 2.8288 9 7 6.2710 -0.7973 1.9868 10 14 6.0347 -2.1599 4.3874 11 1 4.8807 -2.6839 5.1615 12 1 6.9410 -3.2804 4.0294 13 1 6.7736 -1.1694 5.2110 14 7 2.0196 -0.6926 -1.1994 15 6 1.8165 0.1276 -2.4004 16 6 2.4666 -0.5583 -3.6042 17 6 1.8401 -1.9422 -3.7966 18 7 2.4987 -2.6271 -4.9116 19 6 3.8027 -2.5288 -5.2447 20 6 4.0119 -3.3126 -6.3277 21 6 2.7939 -3.9098 -6.6685 22 7 1.8872 -3.5037 -5.8171 23 6 2.0229 -2.7592 -2.5145 24 6 1.3856 -2.0094 -1.3424 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.7397 -1.7685 1.2122 29 1 1.6161 -0.2530 2.1376 30 1 3.9914 -1.1323 0.4344 31 1 3.8679 0.4174 1.3014 32 1 7.2221 -0.8277 2.1749 33 1 0.7485 0.2462 -2.5830 34 1 2.2704 1.1075 -2.2520 35 1 3.5370 -0.6647 -3.4281 36 1 2.3028 0.0428 -4.4986 37 1 0.7769 -1.8350 -4.0118 38 1 4.5462 -1.9316 -4.7379 39 1 4.9529 -3.4518 -6.8392 40 1 2.6308 -4.5916 -7.4901 41 1 3.0863 -2.9003 -2.3214 42 1 1.5420 -3.7306 -2.6296 43 1 1.5266 -2.5817 -0.4255 44 1 0.3197 -1.8810 -1.5301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:28 Heat of formation + Delta-G solvation = 50.293905 kcal Electronic energy + Delta-G solvation = -22026.071161 eV Core-core repulsion = 18978.759572 eV Total energy + Delta-G solvation = -3047.311589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17296 -40.39843 -37.00918 -35.16683 -33.25923 -32.03874 -31.28005 -30.88424 -29.57414 -27.06394 -25.42311 -24.34655 -23.29247 -22.36747 -21.79278 -20.82902 -20.01679 -18.39572 -18.32555 -17.07248 -16.52834 -16.13301 -15.85744 -15.61962 -15.38527 -14.94570 -14.70329 -14.56285 -14.34533 -14.00300 -13.88414 -13.57710 -13.33555 -13.17168 -13.11038 -12.89828 -12.84257 -12.38862 -12.34566 -12.17807 -11.82045 -11.78884 -11.68022 -11.47681 -11.35337 -11.16134 -10.89987 -10.47963 -10.33649 -9.48994 -9.01538 -8.13213 -6.22896 0.99824 1.39561 1.40187 1.52622 1.56918 1.98310 2.43722 2.96791 3.19569 3.42581 3.67102 3.90561 3.94571 4.00973 4.11270 4.18937 4.24978 4.29271 4.36018 4.49675 4.55859 4.58318 4.70953 4.75186 4.79814 4.85092 4.90343 4.92271 5.03160 5.04286 5.08559 5.13120 5.18713 5.21901 5.33597 5.48473 5.60859 5.80943 5.91661 6.04063 6.13987 6.28376 6.32064 6.37077 6.81234 6.97346 7.45257 8.97988 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.004302 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.714613 B = 6507.619390 C = 7538.056596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 H 0.071 0.929 4 C -0.091 4.091 5 C 0.042 3.958 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.002 3.998 9 N -0.930 5.930 10 Si 0.956 3.044 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.279 1.279 14 N -0.544 5.544 15 C 0.063 3.937 16 C -0.115 4.115 17 C 0.169 3.831 18 N -0.372 5.372 19 C 0.048 3.952 20 C -0.285 4.285 21 C 0.038 3.962 22 N -0.338 5.338 23 C -0.117 4.117 24 C 0.064 3.936 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.003 0.997 31 H -0.020 1.020 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.184 0.816 39 H 0.166 0.834 40 H 0.209 0.791 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 -0.773 -14.995 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.020 4.020 3 H 0.090 0.910 4 C -0.129 4.129 5 C 0.005 3.995 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.781 3.219 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.204 1.204 14 N -0.269 5.269 15 C -0.066 4.066 16 C -0.154 4.154 17 C 0.067 3.933 18 N -0.153 5.153 19 C -0.098 4.098 20 C -0.314 4.314 21 C -0.147 4.147 22 N -0.160 5.160 23 C -0.156 4.156 24 C -0.064 4.064 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.022 0.978 31 H -0.001 1.001 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.201 0.799 39 H 0.184 0.816 40 H 0.225 0.775 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.785 -0.822 -14.511 18.099 hybrid contribution 0.929 -0.253 0.611 1.141 sum -9.855 -1.075 -13.900 17.073 Atomic orbital electron populations 1.22380 0.95792 1.02409 1.02705 1.21657 0.93342 0.97363 0.89589 0.91045 1.21523 0.96765 0.98974 0.95613 1.18788 0.91871 0.94100 0.94764 1.21844 0.92298 1.36383 1.07448 0.92874 1.25879 0.97435 0.96323 0.99925 1.70115 1.02337 1.46625 1.38035 0.85541 0.78405 0.78278 0.79669 1.18802 1.20610 1.20443 1.61970 1.58980 1.03260 1.02661 1.22025 0.99318 0.96747 0.88463 1.21907 1.01262 0.93386 0.98852 1.21350 0.97930 0.91546 0.82472 1.49009 1.07007 1.35412 1.23921 1.22956 0.87442 1.01205 0.98201 1.21841 1.00774 1.06510 1.02317 1.24400 0.91225 1.00142 0.98967 1.77265 1.23827 1.10368 1.04517 1.21910 1.01786 0.98586 0.93286 1.21976 0.96315 0.90378 0.97750 0.92139 0.91615 0.91493 0.93434 0.93134 0.97829 1.00150 0.93079 0.92971 0.89884 0.90991 0.89158 0.88018 0.79939 0.81618 0.77485 0.92538 0.91104 0.91305 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.40 71.98 0.60 -3.49 16 2 C 0.09 2.76 2.30 44.91 0.10 2.86 16 3 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 4 C -0.09 -3.63 4.58 30.60 0.14 -3.49 16 5 C 0.04 2.20 4.83 29.85 0.14 2.35 16 6 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 7 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 8 C 0.00 0.11 5.46 84.65 0.46 0.57 16 9 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 10 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 11 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 N -0.54 -16.22 4.04 -871.12 -3.52 -19.74 16 15 C 0.06 1.45 5.18 86.33 0.45 1.89 16 16 C -0.12 -2.50 5.07 30.65 0.16 -2.35 16 17 C 0.17 3.97 3.27 45.07 0.15 4.11 16 18 N -0.37 -9.56 3.53 -327.12 -1.16 -10.71 16 19 C 0.05 1.14 10.59 83.54 0.88 2.02 16 20 C -0.29 -6.05 10.80 21.99 0.24 -5.82 16 21 C 0.04 0.83 12.03 85.24 1.02 1.86 16 22 N -0.34 -9.23 12.58 -57.02 -0.72 -9.94 16 23 C -0.12 -3.13 5.70 30.65 0.17 -2.95 16 24 C 0.06 1.75 4.47 86.33 0.39 2.14 16 25 H 0.06 1.39 6.44 -2.39 -0.02 1.37 16 26 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.07 1.33 6.93 -2.38 -0.02 1.31 16 28 H 0.05 1.88 6.37 -2.39 -0.02 1.87 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.00 0.19 7.79 -2.38 -0.02 0.17 16 31 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.05 1.01 6.98 -2.39 -0.02 1.00 16 34 H 0.08 1.92 7.98 -2.39 -0.02 1.90 16 35 H 0.07 1.76 7.04 -2.39 -0.02 1.75 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.18 3.72 7.20 -2.91 -0.02 3.70 16 39 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.21 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.17 6.27 -2.39 -0.01 2.15 16 44 H 0.05 1.26 6.57 -2.39 -0.02 1.24 16 Total: -1.00 -68.73 342.74 3.02 -65.71 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.96 Total: 15.96 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 5.14 Total: -31.26 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -5.11 Total: -97.38 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.73 3.02 -65.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.001 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds