Wall clock time and date at job start Mon Mar 30 2020 02:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47092 * 2 1 4 4 C 1.52994 * 109.47639 * 239.99630 * 2 1 3 5 5 C 1.52996 * 109.47119 * 64.99683 * 4 2 1 6 6 C 1.50702 * 109.47159 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72211 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 N 1.46504 * 109.47136 * 119.99284 * 2 1 3 15 15 C 1.36879 * 126.39563 * 59.69391 * 14 2 1 16 16 C 1.34671 * 106.81756 * 179.84320 * 15 14 2 17 17 N 1.34125 * 108.02195 * 0.41721 * 16 15 14 18 18 C 1.30499 * 109.25285 * 359.73595 * 17 16 15 19 19 C 1.50703 * 125.64818 * 179.97438 * 18 17 16 20 20 H 1.08997 * 109.50409 * 180.11991 * 19 18 17 21 21 C 1.53122 * 109.50057 * 300.23438 * 19 18 17 22 22 C 1.53127 * 109.16045 * 177.59732 * 21 19 18 23 23 C 1.53034 * 109.27575 * 302.34979 * 22 21 19 24 24 N 1.46847 * 109.52784 * 59.17792 * 23 22 21 25 25 C 1.46849 * 111.19758 * 298.25636 * 24 23 22 26 26 H 1.09003 * 109.47250 * 300.00298 * 1 2 3 27 27 H 1.09005 * 109.47260 * 60.00676 * 1 2 3 28 28 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46806 * 304.99946 * 4 2 1 30 30 H 1.09000 * 109.47828 * 185.00250 * 4 2 1 31 31 H 1.09004 * 109.47066 * 60.00422 * 5 4 2 32 32 H 1.08994 * 109.47405 * 300.00252 * 5 4 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 34 34 H 1.08004 * 126.59429 * 359.97438 * 15 14 2 35 35 H 1.08001 * 125.98746 * 180.19086 * 16 15 14 36 36 H 1.09001 * 109.52554 * 297.50093 * 21 19 18 37 37 H 1.08991 * 109.52205 * 57.69252 * 21 19 18 38 38 H 1.08993 * 109.49910 * 182.40463 * 22 21 19 39 39 H 1.09000 * 109.50065 * 62.28760 * 22 21 19 40 40 H 1.09001 * 109.46218 * 299.16086 * 23 22 21 41 41 H 1.08999 * 109.45081 * 179.19408 * 23 22 21 42 42 H 1.00906 * 110.99907 * 174.16458 * 24 23 22 43 43 H 1.08998 * 109.46526 * 301.72596 * 25 24 23 44 44 H 1.09000 * 109.46332 * 181.75827 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 0.0687 -2.4952 6 6 2.1372 -0.6421 -3.7257 7 1 2.6893 -1.5652 -3.6286 8 6 1.8862 -0.1171 -4.9757 9 7 1.2136 1.0068 -5.0939 10 14 2.5017 -1.0022 -6.5012 11 1 3.2249 -2.2355 -6.0999 12 1 1.3477 -1.3638 -7.3631 13 1 3.4213 -0.1111 -7.2533 14 7 2.0183 -0.6905 1.1963 15 6 1.7648 -1.9898 1.5445 16 6 2.4053 -2.2134 2.7078 17 7 3.0252 -1.0789 3.0650 18 6 2.7978 -0.1624 2.1643 19 6 3.3183 1.2515 2.1991 20 1 2.9674 1.7902 1.3190 21 6 2.8123 1.9515 3.4634 22 6 3.3940 3.3668 3.5213 23 6 4.9220 3.2865 3.4939 24 7 5.3560 2.6094 2.2652 25 6 4.8485 1.2325 2.2101 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7199 -1.2949 30 1 3.1264 -0.7995 -1.2055 31 1 2.0699 1.0673 -2.4494 32 1 0.5490 0.1469 -2.5390 33 1 1.0373 1.3764 -5.9733 34 1 1.1678 -2.6998 0.9914 35 1 2.4149 -3.1424 3.2586 36 1 1.7239 2.0058 3.4390 37 1 3.1303 1.3908 4.3423 38 1 3.0716 3.8554 4.4407 39 1 3.0443 3.9394 2.6623 40 1 5.2718 2.7255 4.3606 41 1 5.3390 4.2932 3.5205 42 1 6.3611 2.6281 2.1777 43 1 5.1986 0.6812 3.0827 44 1 5.2122 0.7474 1.3043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172502962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:40 Heat of formation + Delta-G solvation = 33.484126 kcal Electronic energy + Delta-G solvation = -22026.816506 eV Core-core repulsion = 18978.775991 eV Total energy + Delta-G solvation = -3048.040515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95984 -38.46675 -36.24904 -33.14968 -32.71197 -31.49250 -31.03624 -28.74657 -28.10976 -25.45419 -23.90022 -23.42748 -22.93958 -21.45743 -20.35970 -19.36216 -18.86398 -17.29105 -16.43395 -16.03509 -15.09716 -14.83095 -14.59934 -14.52080 -14.17818 -13.88284 -13.57183 -13.48251 -13.23765 -13.09313 -12.80389 -12.43562 -12.29161 -12.23677 -11.52386 -11.47593 -11.21926 -10.95996 -10.86991 -10.70261 -10.65702 -10.59025 -10.49332 -9.92610 -9.88241 -9.55431 -9.31914 -8.99122 -8.54387 -8.43389 -8.09053 -6.09058 -4.11680 2.34988 3.08375 3.26192 3.34241 3.36948 3.38348 4.07706 4.39424 4.56029 4.79637 4.82103 4.91725 4.99734 5.05992 5.23250 5.27345 5.30916 5.33574 5.45034 5.55414 5.59612 5.68639 5.71015 5.75764 5.82546 5.91311 5.93047 6.03214 6.03833 6.14447 6.30240 6.32734 6.34096 6.51125 6.72633 6.86274 6.90585 7.05337 7.26365 7.51451 7.53124 7.63878 7.88736 8.30598 8.37126 8.94323 9.53151 11.02166 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.004343 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.473387 B = 6445.464850 C = 7189.497283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.098 0.902 4 C -0.114 4.114 5 C 0.025 3.975 6 C -0.522 4.522 7 H 0.055 0.945 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.892 3.108 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 N -0.436 5.436 15 C -0.046 4.046 16 C -0.043 4.043 17 N -0.495 5.495 18 C 0.203 3.797 19 C 0.004 3.996 20 H 0.091 0.909 21 C -0.106 4.106 22 C -0.118 4.118 23 C 0.057 3.943 24 N -0.690 5.690 25 C 0.072 3.928 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.345 0.655 43 H 0.043 0.957 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 1.900 16.713 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.116 0.884 4 C -0.153 4.153 5 C -0.013 4.013 6 C -0.560 4.560 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 N -0.117 5.117 15 C -0.181 4.181 16 C -0.191 4.191 17 N -0.213 5.213 18 C -0.060 4.060 19 C -0.017 4.017 20 H 0.109 0.891 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.073 4.073 24 N -0.322 5.322 25 C -0.058 4.058 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.186 0.814 35 H 0.181 0.819 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.163 0.837 43 H 0.061 0.939 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.659 2.456 16.773 17.159 hybrid contribution 0.286 -1.211 -1.105 1.664 sum 2.946 1.245 15.668 15.991 Atomic orbital electron populations 1.22155 0.93470 1.02898 1.02938 1.21877 0.95541 0.97342 0.83229 0.88367 1.22027 1.00302 0.99585 0.93347 1.19127 0.97080 0.95134 0.89912 1.21209 1.35285 1.08587 0.90957 0.92652 1.24996 0.95114 0.94979 0.99164 1.69961 1.40210 1.19436 1.23677 0.86537 0.78644 0.79805 0.83056 1.19732 1.20947 1.20909 1.45801 1.36902 1.10307 1.18643 1.22606 1.07866 0.87220 1.00401 1.22149 1.02301 0.97799 0.96871 1.70104 1.24080 1.00065 1.27096 1.22933 0.98376 0.97031 0.87629 1.19503 0.95199 0.86874 1.00103 0.89116 1.21548 1.00252 0.95419 0.97255 1.21609 0.94846 0.96899 1.02254 1.21933 0.96155 0.98630 0.90550 1.60204 1.16550 1.17103 1.38295 1.21814 0.93587 0.88780 1.01582 0.92979 0.89299 0.92116 0.92510 0.92627 0.96331 0.95876 0.92937 0.81435 0.81914 0.91894 0.91077 0.91399 0.90942 0.95175 0.90855 0.83682 0.93885 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.00 37.15 0.33 -2.00 16 2 C 0.12 1.99 3.00 -67.93 -0.20 1.78 16 3 H 0.10 1.60 6.28 -51.93 -0.33 1.27 16 4 C -0.11 -2.24 4.63 -26.74 -0.12 -2.36 16 5 C 0.02 0.60 4.73 -27.88 -0.13 0.47 16 6 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 7 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 10 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 14 N -0.44 -6.90 2.61 -106.83 -0.28 -7.18 16 15 C -0.05 -0.69 10.70 -16.56 -0.18 -0.87 16 16 C -0.04 -0.64 11.87 -17.81 -0.21 -0.85 16 17 N -0.49 -8.12 11.25 -10.81 -0.12 -8.24 16 18 C 0.20 3.19 6.42 -155.41 -1.00 2.19 16 19 C 0.00 0.05 2.70 -91.69 -0.25 -0.20 16 20 H 0.09 1.30 6.32 -51.93 -0.33 0.97 16 21 C -0.11 -1.26 5.27 -26.60 -0.14 -1.40 16 22 C -0.12 -1.18 6.09 -26.65 -0.16 -1.34 16 23 C 0.06 0.55 6.55 -3.84 -0.03 0.52 16 24 N -0.69 -7.72 6.85 -113.82 -0.78 -8.49 16 25 C 0.07 0.93 5.82 -3.83 -0.02 0.91 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.41 6.57 -51.93 -0.34 1.07 16 28 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 29 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.57 6.56 -51.93 -0.34 0.23 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 35 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.35 3.24 8.90 -39.29 -0.35 2.89 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -30.22 348.58 -10.29 -40.51 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.56 Total: 3.41 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.52 Total: -16.21 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.44 Total: -49.19 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.22 -10.29 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.990 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds